SNU-1040 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description cell line derived from large_intestine (Cancer Cell Line Encyclopedia)
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Genes

102 genes with high or low copy number in SNU-1040 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value

low copy number

Symbol Name Standardized Value
RPS4X ribosomal protein S4, X-linked -3.83684
RPS26P11 ribosomal protein S26 pseudogene 11 -3.83684
LINC00891 long intergenic non-protein coding RNA 891 -3.83684
CXORF49B chromosome X open reading frame 49B -3.83684
CITED1 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 -3.83684
P2RY4 pyrimidinergic receptor P2Y, G-protein coupled, 4 -3.7119
FAM226B family with sequence similarity 226, member B (non-protein coding) -3.7119
BCYRN1 brain cytoplasmic RNA 1 -3.7119
ERCC6L excision repair cross-complementation group 6-like -3.7119
FOXO4 forkhead box O4 -3.7119
DMRTC1 DMRT-like family C1 -3.7119
NONO non-POU domain containing, octamer-binding -3.7119
PIN4 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 -3.7119
ITGB1BP2 integrin beta 1 binding protein (melusin) 2 -3.7119
DLG3 discs, large homolog 3 (Drosophila) -3.7119
SLC7A3 solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 -3.7119
PHKA1 phosphorylase kinase, alpha 1 (muscle) -3.7119
NAP1L6 nucleosome assembly protein 1-like 6 -3.7119
SNX12 sorting nexin 12 -3.7119
INGX inhibitor of growth family, X-linked, pseudogene -3.7119
DGAT2L6 diacylglycerol O-acyltransferase 2-like 6 -3.7119
PDZD11 PDZ domain containing 11 -3.7119
GJB1 gap junction protein, beta 1, 32kDa -3.7119
LINC00684 long intergenic non-protein coding RNA 684 -3.7119
PJA1 praja ring finger 1, E3 ubiquitin protein ligase -3.7119
RAB41 RAB41, member RAS oncogene family -3.7119
OTUD6A OTU deubiquitinase 6A -3.7119
CDX4 caudal type homeobox 4 -3.7119
MIR676 microRNA 676 -3.7119
FAM155B family with sequence similarity 155, member B -3.7119
EDA ectodysplasin A -3.7119
MAP2K4P1 mitogen-activated protein kinase kinase 4 pseudogene 1 -3.7119
LINC00269 long intergenic non-protein coding RNA 269 -3.7119
NAP1L2 nucleosome assembly protein 1-like 2 -3.7119
KIF4A kinesin family member 4A -3.7119
FLJ44635 TPT1-like protein -3.7119
IGBP1 immunoglobulin (CD79A) binding protein 1 -3.7119
CHIC1 cysteine-rich hydrophobic domain 1 -3.7119
RGAG4 retrotransposon gag domain containing 4 -3.7119
ZMYM3 zinc finger, MYM-type 3 -3.7119
ACRC acidic repeat containing -3.7119
GDPD2 glycerophosphodiester phosphodiesterase domain containing 2 -3.7119
TEX11 testis expressed 11 -3.7119
OGT O-linked N-acetylglucosamine (GlcNAc) transferase -3.7119
CXCR3 chemokine (C-X-C motif) receptor 3 -3.7119
ARR3 arrestin 3, retinal (X-arrestin) -3.7119
TAF1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa -3.7119
AWAT1 acyl-CoA wax alcohol acyltransferase 1 -3.7119
AWAT2 acyl-CoA wax alcohol acyltransferase 2 -3.7119
HDAC8 histone deacetylase 8 -3.7119
NHSL2 NHS-like 2 -3.7119
PABPC1L2B poly(A) binding protein, cytoplasmic 1-like 2B -3.7119
PABPC1L2A poly(A) binding protein, cytoplasmic 1-like 2A -3.7119
MIR384 microRNA 384 -3.61078
MED12 mediator complex subunit 12 -3.61078
NLGN3 neuroligin 3 -3.61078
CXORF65 chromosome X open reading frame 65 -3.61078
TAF9B TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa -3.61078
IL2RG interleukin 2 receptor, gamma -3.61078
MAGEE1 melanoma antigen family E1 -3.61078
CYSLTR1 cysteinyl leukotriene receptor 1 -3.61078
ZCCHC5 zinc finger, CCHC domain containing 5 -3.57558
LPAR4 lysophosphatidic acid receptor 4 -3.57558
TBX22 T-box 22 -3.57558
ITM2A integral membrane protein 2A -3.57558
MIR4328 microRNA 4328 -3.57558
P2RY10 purinergic receptor P2Y, G-protein coupled, 10 -3.57558
PGK1 phosphoglycerate kinase 1 -3.57558
GPR174 G protein-coupled receptor 174 -3.56449
FGF16 fibroblast growth factor 16 -3.56449
PGAM4 phosphoglycerate mutase family member 4 -3.56449
ATP7A ATPase, Cu++ transporting, alpha polypeptide -3.56449
COX7B cytochrome c oxidase subunit VIIb -3.56449
SH3BGRL SH3 domain binding glutamate-rich protein like -3.53061
MAGT1 magnesium transporter 1 -3.53061
HMGN5 high mobility group nucleosome binding domain 5 -3.53061
ATRX alpha thalassemia/mental retardation syndrome X-linked -3.50611
EFNB1 ephrin-B1 -3.05196
OPHN1 oligophrenin 1 -3.03592
YIPF6 Yip1 domain family, member 6 -3.03082
STARD8 StAR-related lipid transfer (START) domain containing 8 -3.03082
BRWD3 bromodomain and WD repeat domain containing 3 -2.99615
FAM46D family with sequence similarity 46, member D -2.99615
CHM choroideremia (Rab escort protein 1) -2.94448
POU3F4 POU class 3 homeobox 4 -2.93929
PCDH11X protocadherin 11 X-linked -2.93929
POF1B premature ovarian failure, 1B -2.91868
DACH2 dachshund family transcription factor 2 -2.91868
TGIF2LX TGFB-induced factor homeobox 2-like, X-linked -2.91868
ZNF711 zinc finger protein 711 -2.91868
UBE2DNL ubiquitin-conjugating enzyme E2D N-terminal like (pseudogene) -2.91612
RPS6KA6 ribosomal protein S6 kinase, 90kDa, polypeptide 6 -2.91612
SATL1 spermidine/spermine N1-acetyl transferase-like 1 -2.91612
CPXCR1 CPX chromosome region, candidate 1 -2.89302
HDX highly divergent homeobox -2.89302
PABPC5 poly(A) binding protein, cytoplasmic 5 -2.89302
CYLC1 cylicin, basic protein of sperm head cytoskeleton 1 -2.89201
KLHL4 kelch-like family member 4 -2.89201
APOOL apolipoprotein O-like -2.89201
OR2T11 olfactory receptor, family 2, subfamily T, member 11 (gene/pseudogene) -2.78432
OR2T10 olfactory receptor, family 2, subfamily T, member 10 -2.78237
HCG4B HLA complex group 4B (non-protein coding) -2.75184