SNU-182 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

108 genes with high or low copy number in SNU-182 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
YDJC YdjC homolog (bacterial) 2.44392
YPEL1 yippee-like 1 (Drosophila) 2.44392
LINC00895 long intergenic non-protein coding RNA 895 2.44392
CCDC116 coiled-coil domain containing 116 2.44392
MIR301B microRNA 301b 2.41451
UBE2L3 ubiquitin-conjugating enzyme E2L 3 2.41451
SDF2L1 stromal cell-derived factor 2-like 1 2.41451
PPIL2 peptidylprolyl isomerase (cyclophilin)-like 2 2.41451
SEPT5-GP1BB SEPT5-GP1BB readthrough 2.41451
MIR130B microRNA 130b 2.41451
C22ORF29 chromosome 22 open reading frame 29 2.41451
TBX1 T-box 1 2.41451
GNB1L guanine nucleotide binding protein (G protein), beta polypeptide 1-like 2.41451
ARVCF armadillo repeat gene deleted in velocardiofacial syndrome 2.39327
RTN4R reticulon 4 receptor 2.39327
LINC00896 long intergenic non-protein coding RNA 896 2.39327
TANGO2 transport and golgi organization 2 homolog (Drosophila) 2.39327
LOC388849 uncharacterized LOC388849 2.39327
MIR4761 microRNA 4761 2.39327
MIR185 microRNA 185 2.39327
LOC284865 uncharacterized LOC284865 2.39327
COMT catechol-O-methyltransferase 2.39327
TXNRD2 thioredoxin reductase 2 2.39327
MIR1286 microRNA 1286 2.39327
DGCR6L DiGeorge syndrome critical region gene 6-like 2.36889
PI4KAP1 phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 1 2.36889
RIMBP3 RIMS binding protein 3 2.36889
USP41 ubiquitin specific peptidase 41 2.36889
MIR1306 microRNA 1306 2.36889
MIR3618 microRNA 3618 2.36889
RANBP1 RAN binding protein 1 2.36889
TMEM191C transmembrane protein 191C 2.36889
ZDHHC8 zinc finger, DHHC-type containing 8 2.36889
TMEM191B transmembrane protein 191B 2.36889
DGCR8 DGCR8 microprocessor complex subunit 2.36889
PI4KAP2 phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 2 2.36889
TRMT2A tRNA methyltransferase 2 homolog A (S. cerevisiae) 2.36889
POM121L8P POM121 transmembrane nucleoporin-like 8 pseudogene 2.35236
RIMBP3C RIMS binding protein 3C 2.35236
HIC2 hypermethylated in cancer 2 2.35236
POM121L7 POM121 transmembrane nucleoporin-like 7 2.3178
GGT2 gamma-glutamyltransferase 2 2.3178
ZNF74 zinc finger protein 74 2.3178
BCRP2 breakpoint cluster region pseudogene 2 2.30944
SCARF2 scavenger receptor class F, member 2 2.30944
KLHL22 kelch-like family member 22 2.30944
MED15 mediator complex subunit 15 2.30944
POM121L4P POM121 transmembrane nucleoporin-like 4 pseudogene 2.283
TMEM191A transmembrane protein 191A (pseudogene) 2.283
SNAP29 synaptosomal-associated protein, 29kDa 2.283
SLC7A4 solute carrier family 7, member 4 2.283
PI4KA phosphatidylinositol 4-kinase, catalytic, alpha 2.283
SERPIND1 serpin peptidase inhibitor, clade D (heparin cofactor), member 1 2.283
P2RX6P purinergic receptor P2X, ligand gated ion channel, 6 pseudogene 2.283
THAP7-AS1 THAP7 antisense RNA 1 2.26395
AIFM3 apoptosis-inducing factor, mitochondrion-associated, 3 2.26395
THAP7 THAP domain containing 7 2.26395
LZTR1 leucine-zipper-like transcription regulator 1 2.26395
TUBA3FP tubulin, alpha 3f, pseudogene 2.26395
P2RX6 purinergic receptor P2X, ligand gated ion channel, 6 2.26395
CRKL v-crk avian sarcoma virus CT10 oncogene homolog-like 2.26395
ZNF18 zinc finger protein 18 2.15802
DNAH9 dynein, axonemal, heavy chain 9 2.15802
SHISA6 shisa family member 6 2.15726
MAP2K4 mitogen-activated protein kinase kinase 4 2.15058
MIR744 microRNA 744 2.14746
SCARNA9L small Cajal body-specific RNA 9-like 2.14702
RPS6KA3 ribosomal protein S6 kinase, 90kDa, polypeptide 3 2.14702
EIF1AX eukaryotic translation initiation factor 1A, X-linked 2.14702
MAP7D2 MAP7 domain containing 2 2.14702
LINC00670 long intergenic non-protein coding RNA 670 2.1316
HS3ST3A1 heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 2.12506
ELAC2 elaC ribonuclease Z 2 2.12439
ARHGAP44 Rho GTPase activating protein 44 2.12439
MYOCD myocardin 2.12439
CDRT1 CMT1A duplicated region transcript 1 2.12439
MGC12916 uncharacterized protein MGC12916 2.12225
COX10-AS1 COX10 antisense RNA 1 2.12225
MEIS3P1 Meis homeobox 3 pseudogene 1 2.12225
HS3ST3B1 heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1 2.12225
ZNF286A zinc finger protein 286A 2.12225
CDRT15P2 CMT1A duplicated region transcript 15 pseudogene 2 2.12225
CDRT15P1 CMT1A duplicated region transcript 15 pseudogene 1 2.12225
TBC1D26 TBC1 domain family, member 26 2.12225
CDRT15 CMT1A duplicated region transcript 15 2.12225
COX10 COX10 heme A:farnesyltransferase cytochrome c oxidase assembly factor 2.12225
TRIM16 tripartite motif containing 16 2.11344
PIGL phosphatidylinositol glycan anchor biosynthesis, class L 2.11167
NCOR1 nuclear receptor corepressor 1 2.10317
TVP23C-CDRT4 TVP23C-CDRT4 readthrough 2.10038
TVP23C trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) 2.10038
CDRT7 CMT1A duplicated region transcript 7 (non-protein coding) 2.10038
CDRT4 CMT1A duplicated region transcript 4 2.10038
ZSWIM7 zinc finger, SWIM-type containing 7 2.10038
ADORA2B adenosine A2b receptor 2.10038
TTC19 tetratricopeptide repeat domain 19 2.10038
MIR4731 microRNA 4731 2.10038
TOP3B topoisomerase (DNA) III beta 2.09628
PPM1F protein phosphatase, Mg2+/Mn2+ dependent, 1F 2.09628
TEKT3 tektin 3 2.09431
PMP22 peripheral myelin protein 22 2.09431
MAPK1 mitogen-activated protein kinase 1 2.09117
BCR breakpoint cluster region 2.0722

low copy number

Symbol Name Standardized Value
DEFB4B defensin, beta 4B -2.79198
DEFB103A defensin, beta 103A -2.78913
OR2T11 olfactory receptor, family 2, subfamily T, member 11 (gene/pseudogene) -2.78432
OR2T10 olfactory receptor, family 2, subfamily T, member 10 -2.78237
BTNL3 butyrophilin-like 3 -2.72661