SNU-283 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description cell line derived from large_intestine (Cancer Cell Line Encyclopedia)
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Genes

55 genes with high or low copy number in SNU-283 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
MIR4509-1 microRNA 4509-1 2.10616

low copy number

Symbol Name Standardized Value
ACTRT1 actin-related protein T1 -3.53061
SNORA51 small nucleolar RNA, H/ACA box 51 -3.44288
MAN2A1 mannosidase, alpha, class 2A, member 1 -3.29865
LOC100289673 phosphoglycerate mutase family member 5 pseudogene -3.29865
PJA2 praja ring finger 2, E3 ubiquitin protein ligase -3.2703
SLC25A46 solute carrier family 25, member 46 -3.2703
TMEM232 transmembrane protein 232 -3.2703
FBXL17 F-box and leucine-rich repeat protein 17 -3.24687
SNORD65 small nucleolar RNA, C/D box 65 -3.18157
KRT16P3 keratin 16 pseudogene 3 -3.17697
SLC47A2 solute carrier family 47 (multidrug and toxin extrusion), member 2 -3.17697
LGALS9B lectin, galactoside-binding, soluble, 9B -3.17697
PIGL phosphatidylinositol glycan anchor biosynthesis, class L -3.15836
SNORD49B small nucleolar RNA, C/D box 49B -3.15179
MIR1288 microRNA 1288 -3.15179
CENPV centromere protein V -3.15179
ZNF287 zinc finger protein 287 -3.15179
KRT16P2 keratin 16 pseudogene 2 -3.15179
FAM106CP family with sequence similarity 106, member C, pseudogene -3.15179
UBB ubiquitin B -3.15179
CCDC144A coiled-coil domain containing 144A -3.15179
TNFRSF13B tumor necrosis factor receptor superfamily, member 13B -3.15179
TRPV2 transient receptor potential cation channel, subfamily V, member 2 -3.15179
ZNF624 zinc finger protein 624 -3.15179
SNORD49A small nucleolar RNA, C/D box 49A -3.15179
AKAP10 A kinase (PRKA) anchor protein 10 -3.08758
LOC100287072 ribosomal protein S6 kinase, 70kDa, polypeptide 1 pseudogene -3.08758
CDRT15L2 CMT1A duplicated region transcript 15-like 2 -3.08574
ALDH3A1 aldehyde dehydrogenase 3 family, member A1 -3.08574
NCOR1 nuclear receptor corepressor 1 -3.08208
USP32P1 ubiquitin specific peptidase 32 pseudogene 1 -3.07287
ULK2 unc-51 like autophagy activating kinase 2 -3.04801
CCDC144CP coiled-coil domain containing 144C, pseudogene -3.04765
CCDC144NL coiled-coil domain containing 144 family, N-terminal like -3.04729
TMEM11 transmembrane protein 11 -3.04568
LINC01563 long intergenic non-protein coding RNA 1563 -3.04568
MAP2K3 mitogen-activated protein kinase kinase 3 -3.04568
DHRS7B dehydrogenase/reductase (SDR family) member 7B -3.04568
KCNJ12 potassium channel, inwardly rectifying subfamily J, member 12 -3.04568
SPECC1 sperm antigen with calponin homology and coiled-coil domains 1 -3.01237
USP22 ubiquitin specific peptidase 22 -3.00965
FLJ36000 uncharacterized FLJ36000 -3.00965
C17ORF51 chromosome 17 open reading frame 51 -3.00965
UBBP4 ubiquitin B pseudogene 4 -2.98294
FAM27L family with sequence similarity 27-like -2.98294
MTRNR2L1 MT-RNR2-like 1 -2.98179
SHISA6 shisa family member 6 -2.91268
MIR744 microRNA 744 -2.89201
ZNF18 zinc finger protein 18 -2.87802
DNAH9 dynein, axonemal, heavy chain 9 -2.87802
MAP2K4 mitogen-activated protein kinase kinase 4 -2.85607
OR2T34 olfactory receptor, family 2, subfamily T, member 34 -2.84792
OR2T11 olfactory receptor, family 2, subfamily T, member 11 (gene/pseudogene) -2.78432
OR2T10 olfactory receptor, family 2, subfamily T, member 10 -2.78237