SNU-61 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description cell line derived from large intestine (Cancer Cell Line Encyclopedia)
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Genes

234 genes with high or low copy number in SNU-61 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
MIR550A3 microRNA 550a-3 2.64759
PRR15 proline rich 15 2.64759
CHN2 chimerin 2 2.64759
DPY19L2P3 DPY19L2 pseudogene 3 2.64759
GLI3 GLI family zinc finger 3 2.59653
MRPL32 mitochondrial ribosomal protein L32 2.59653
MYL7 myosin, light chain 7, regulatory 2.59653
MYO1G myosin IG 2.59653
SNORA5C small nucleolar RNA, H/ACA box 5C 2.59653
RASA4CP RAS p21 protein activator 4C, pseudogene 2.59653
DBNL drebrin-like 2.59653
WIPF3 WAS/WASL interacting protein family, member 3 2.59653
AQP1 aquaporin 1 (Colton blood group) 2.59653
POLD2 polymerase (DNA directed), delta 2, accessory subunit 2.59653
CAMK2B calcium/calmodulin-dependent protein kinase II beta 2.59653
SNORA5B small nucleolar RNA, H/ACA box 5B 2.59653
NUDCD3 NudC domain containing 3 2.59653
SCRN1 secernin 1 2.59653
YKT6 YKT6 v-SNARE homolog (S. cerevisiae) 2.59653
GARS glycyl-tRNA synthetase 2.59653
POLR2J4 polymerase (RNA) II (DNA directed) polypeptide J4, pseudogene 2.59653
RAMP3 receptor (G protein-coupled) activity modifying protein 3 2.59653
HECW1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 2.59653
BLVRA biliverdin reductase A 2.59653
GHRHR growth hormone releasing hormone receptor 2.59653
URGCP upregulator of cell proliferation 2.59653
PSMA2 proteasome (prosome, macropain) subunit, alpha type, 2 2.59653
URGCP-MRPS24 URGCP-MRPS24 readthrough 2.59653
LINC00957 long intergenic non-protein coding RNA 957 2.59653
DDX56 DEAD (Asp-Glu-Ala-Asp) box helicase 56 2.59653
MRPS24 mitochondrial ribosomal protein S24 2.59653
UBE2D4 ubiquitin-conjugating enzyme E2D 4 (putative) 2.59653
LOC401320 uncharacterized LOC401320 2.59653
CCM2 cerebral cavernous malformation 2 2.59653
NACAD NAC alpha domain containing 2.59653
OGDH oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 2.59653
POLM polymerase (DNA directed), mu 2.59653
NEUROD6 neuronal differentiation 6 2.59653
NPC1L1 NPC1-like 1 2.59653
TMED4 transmembrane emp24 protein transport domain containing 4 2.59653
MIR4649 microRNA 4649 2.59653
STK17A serine/threonine kinase 17a 2.59653
FKBP14 FK506 binding protein 14, 22 kDa 2.59653
C7ORF25 chromosome 7 open reading frame 25 2.59653
TBRG4 transforming growth factor beta regulator 4 2.59653
PLEKHA8 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 2.59653
FAM188B family with sequence similarity 188, member B 2.59653
SNHG15 small nucleolar RNA host gene 15 2.59653
LOC100506895 uncharacterized LOC100506895 2.59653
PGAM2 phosphoglycerate mutase 2 (muscle) 2.59653
INMT indolethylamine N-methyltransferase 2.59653
COA1 cytochrome c oxidase assembly factor 1 homolog (S. cerevisiae) 2.59653
INMT-FAM188B INMT-FAM188B readthrough (NMD candidate) 2.59653
GCK glucokinase (hexokinase 4) 2.59653
CRHR2 corticotropin releasing hormone receptor 2 2.59653
ADCYAP1R1 adenylate cyclase activating polypeptide 1 (pituitary) receptor type I 2.59653
SPDYE1 speedy/RINGO cell cycle regulator family member E1 2.59653
MIR3943 microRNA 3943 2.59653
GGCT gamma-glutamylcyclotransferase 2.59653
AEBP1 AE binding protein 1 2.59653
H2AFV H2A histone family, member V 2.49065
NPSR1-AS1 NPSR1 antisense RNA 1 2.49065
LOC401324 uncharacterized LOC401324 2.49065
DPY19L2P1 DPY19L2 pseudogene 1 2.49065
PURB purine-rich element binding protein B 2.49065
DKFZP586I1420 uncharacterized protein DKFZp586I1420 2.49065
DPY19L1 dpy-19-like 1 (C. elegans) 2.49065
POU6F2-AS1 POU6F2 antisense RNA 1 2.49065
MIR550B1 microRNA 550b-1 2.49065
IGFBP1 insulin-like growth factor binding protein 1 2.49065
NPSR1 neuropeptide S receptor 1 2.49065
PPIA peptidylprolyl isomerase A (cyclophilin A) 2.49065
TBX20 T-box 20 2.49065
ZMIZ2 zinc finger, MIZ-type containing 2 2.49065
MIR550A1 microRNA 550a-1 2.49065
ZNRF2 zinc and ring finger 2, E3 ubiquitin protein ligase 2.49065
BMPER BMP binding endothelial regulator 2.49065
NOD1 nucleotide-binding oligomerization domain containing 1 2.49065
IGFBP3 insulin-like growth factor binding protein 3 2.49065
CDK13 cyclin-dependent kinase 13 2.44392
LOC100130673 phosphoribosyl pyrophosphate synthetase 2 pseudogene 2.44392
LOC646999 akirin 1 pseudogene 2.44392
POU6F2 POU class 6 homeobox 2 2.44392
RP9P retinitis pigmentosa 9 pseudogene 2.44392
RPL19P12 ribosomal protein L19 pseudogene 12 2.44392
ADCY1 adenylate cyclase 1 (brain) 2.44392
RALA v-ral simian leukemia viral oncogene homolog A (ras related) 2.44392
PPP1R17 protein phosphatase 1, regulatory subunit 17 2.44392
YAE1D1 Yae1 domain containing 1 2.44392
MPLKIP M-phase specific PLK1 interacting protein 2.44392
CCDC129 coiled-coil domain containing 129 2.44392
SEPT7P2 septin 7 pseudogene 2 2.44392
NAPEPLD N-acyl phosphatidylethanolamine phospholipase D 2.44392
LSM5 LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) 2.44392
INHBA-AS1 INHBA antisense RNA 1 2.41451
PDE1C phosphodiesterase 1C, calmodulin-dependent 70kDa 2.41451
INHBA inhibin, beta A 2.41451
CDC14C cell division cycle 14C 2.41451
DPY19L1P2 DPY19L1 pseudogene 2 2.41451
MIR550A2 microRNA 550a-2 2.41451
ZNRF2P1 zinc and ring finger 2 pseudogene 1 2.41451
KBTBD2 kelch repeat and BTB (POZ) domain containing 2 2.41451
MIR550B2 microRNA 550b-2 2.41451
FIGNL1 fidgetin-like 1 2.39327
VWC2 von Willebrand factor C domain containing 2 2.39327
IKZF1 IKAROS family zinc finger 1 (Ikaros) 2.36889
DDC dopa decarboxylase (aromatic L-amino acid decarboxylase) 2.36889
ZPBP zona pellucida binding protein 2.36889
C7ORF72 chromosome 7 open reading frame 72 2.36889
FAM217B family with sequence similarity 217, member B 2.3178
C20ORF197 chromosome 20 open reading frame 197 2.3178
SYCP2 synaptonemal complex protein 2 2.3178
MIR4533 microRNA 4533 2.3178
GRB10 growth factor receptor-bound protein 10 2.3178
EDN3 endothelin 3 2.3178
CDH26 cadherin 26 2.3178
PPP1R3D protein phosphatase 1, regulatory subunit 3D 2.3178
GNAS GNAS complex locus 2.30944
CTSZ cathepsin Z 2.30944
TUBB1 tubulin, beta 1 class VI 2.30944
SLMO2 slowmo homolog 2 (Drosophila) 2.30944
COBL cordon-bleu WH2 repeat protein 2.30944
SLMO2-ATP5E SLMO2-ATP5E readthrough 2.30944
ZNF831 zinc finger protein 831 2.30944
ATP5E ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit 2.30944
NELFCD negative elongation factor complex member C/D 2.30944
PHACTR3 phosphatase and actin regulator 3 2.30944
LOC100506384 uncharacterized LOC100506384 2.30944
MIR298 microRNA 298 2.283
GNAS-AS1 GNAS antisense RNA 1 2.283
MIR296 microRNA 296 2.283
CDH4 cadherin 4, type 1, R-cadherin (retinal) 2.26395
POM121L12 POM121 transmembrane nucleoporin-like 12 2.24845
HPVC1 human papillomavirus (type 18) E5 central sequence-like 1 2.22793
VSTM2A V-set and transmembrane domain containing 2A 2.22633
VOPP1 vesicular, overexpressed in cancer, prosurvival protein 1 2.22123
LANCL2 LanC lantibiotic synthetase component C-like 2 (bacterial) 2.21727
SEC61G Sec61 gamma subunit 2.21727
HHLA1 HERV-H LTR-associating 1 2.21258
EFR3A EFR3 homolog A (S. cerevisiae) 2.21096
EGFR-AS1 EGFR antisense RNA 1 2.21096
OC90 otoconin 90 2.21096
EGFR epidermal growth factor receptor 2.20309
MIR5194 microRNA 5194 2.20053
ASAP1-IT1 ASAP1 intronic transcript 1 2.20053
FAM49B family with sequence similarity 49, member B 2.19863
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 2.19863
ADCY8 adenylate cyclase 8 (brain) 2.19301
FAM83A-AS1 FAM83A antisense RNA 1 2.18778
DERL1 derlin 1 2.18778
ZHX2 zinc fingers and homeoboxes 2 2.18778
SACK1A scaffolding CK1 anchoring protein A 2.18778
GSDMC gasdermin C 2.18778
MIR4663 microRNA 4663 2.18124
C8ORF76 chromosome 8 open reading frame 76 2.18124
KLHL38 kelch-like family member 38 2.17694
RNF139 ring finger protein 139 2.17694
FBXO32 F-box protein 32 2.16947
TRMT12 tRNA methyltransferase 12 homolog (S. cerevisiae) 2.16947
ATAD2 ATPase family, AAA domain containing 2 2.16947
WDYHV1 WDYHV motif containing 1 2.16947
HAS2-AS1 HAS2 antisense RNA 1 2.16947
HAS2 hyaluronan synthase 2 2.16947
ZHX1 zinc fingers and homeoboxes 1 2.16947
MTSS1 metastasis suppressor 1 2.16816
TMEM65 transmembrane protein 65 2.16816
TATDN1 TatD DNase domain containing 1 2.16816
ANXA13 annexin A13 2.16816
NDUFB9 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa 2.16816
FAM91A1 family with sequence similarity 91, member A1 2.16625
FER1L6-AS1 FER1L6 antisense RNA 1 2.16625
ZNF572 zinc finger protein 572 2.16564
SQLE squalene epoxidase 2.16459
FER1L6 fer-1-like family member 6 2.16459
KIAA0196 KIAA0196 2.16459
NSMCE2 non-SMC element 2, MMS21 homolog (S. cerevisiae) 2.16307
TRIB1 tribbles pseudokinase 1 2.16176
CCDC26 CCDC26 long non-coding RNA 2.16091
LINC00861 long intergenic non-protein coding RNA 861 2.15967
SNORA25 small nucleolar RNA, H/ACA box 25 2.15953
FAM84B family with sequence similarity 84, member B 2.15847
LOC646762 uncharacterized LOC646762 2.10992
LINC00265 long intergenic non-protein coding RNA 265 2.09073
LINC00525 long intergenic non-protein coding RNA 525 2.08712
DPY19L1P1 DPY19L1 pseudogene 1 2.08712
RP9 retinitis pigmentosa 9 (autosomal dominant) 2.08712
FKBP9 FK506 binding protein 9, 63 kDa 2.08712
C7ORF65 chromosome 7 open reading frame 65 2.08712
C7ORF69 chromosome 7 open reading frame 69 2.08712
BBS9 Bardet-Biedl syndrome 9 2.08712
NT5C3A 5'-nucleotidase, cytosolic IIIA 2.08712
PCAT1 prostate cancer associated transcript 1 (non-protein coding) 2.08634
AVL9 AVL9 homolog (S. cerevisiase) 2.08391
HUS1 HUS1 checkpoint homolog (S. pombe) 2.08334
SUN3 Sad1 and UNC84 domain containing 3 2.08334
C7ORF57 chromosome 7 open reading frame 57 2.08334
PKD1L1 polycystic kidney disease 1 like 1 2.08334
UPP1 uridine phosphorylase 1 2.08334
TNS3 tensin 3 2.08334
SNORA9 small nucleolar RNA, H/ACA box 9 2.07851
ABCA13 ATP-binding cassette, sub-family A (ABC1), member 13 2.07776
MIR1206 microRNA 1206 2.07612
LPP-AS2 LPP antisense RNA 2 2.07558
FLJ42393 uncharacterized LOC401105 2.07558
LPP LIM domain containing preferred translocation partner in lipoma 2.07346
MIR1205 microRNA 1205 2.07136
MIR1207 microRNA 1207 2.07136
MIR1208 microRNA 1208 2.07136
TMEM75 transmembrane protein 75 2.06401
CCAT1 colon cancer associated transcript 1 (non-protein coding) 2.0614
POU5F1B POU class 5 homeobox 1B 2.05836
SLA Src-like-adaptor 2.05778
HPYR1 Helicobacter pylori responsive 1 (non-protein coding) 2.05635
LRRC6 leucine rich repeat containing 6 2.0557
PHF20L1 PHD finger protein 20-like 1 2.05441
TMEM71 transmembrane protein 71 2.05422
TG thyroglobulin 2.054
KCNQ3 potassium channel, voltage gated KQT-like subfamily Q, member 3 2.054
IGHG1 immunoglobulin heavy constant gamma 1 (G1m marker) 2.04842
IGHE immunoglobulin heavy constant epsilon 2.04816
IGHD immunoglobulin heavy constant delta 2.04803
ADAM6 ADAM metallopeptidase domain 6 (pseudogene) 2.04767
KIAA0125 KIAA0125 2.04731
LINC00226 long intergenic non-protein coding RNA 226 2.04712
MIR1204 microRNA 1204 2.04661
PVT1 Pvt1 oncogene (non-protein coding) 2.04585

low copy number

Symbol Name Standardized Value
MIR2277 microRNA 2277 -3.11641
NR2F1 nuclear receptor subfamily 2, group F, member 1 -3.11641
FAM172A family with sequence similarity 172, member A -3.05196
NR2F1-AS1 NR2F1 antisense RNA 1 -3.05196
POU5F2 POU domain class 5, transcription factor 2 -3.03082
EEF1DP3 eukaryotic translation elongation factor 1 delta pseudogene 3 -2.80776
PSG4 pregnancy specific beta-1-glycoprotein 4 -2.75301
LOC284344 uncharacterized LOC284344 -2.74526