SNU1040 Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description cell line derived from large_intestine (Cancer Cell Line Encyclopedia)
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Genes

109 genes with high or low copy number in SNU1040 relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
GNG2 guanine nucleotide binding protein (G protein), gamma 2 2.59138
LINC00620 long intergenic non-protein coding RNA 620 2.31366
RAB40A RAB40A, member RAS oncogene family 1.93333
KIR2DL3 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 3 1.83119
RAF1 Raf-1 proto-oncogene, serine/threonine kinase 1.6737
NRCAM neuronal cell adhesion molecule 1.66415
FAM225A family with sequence similarity 225, member A (non-protein coding) 1.4823
FAM225B family with sequence similarity 225, member B (non-protein coding) 1.48168

low copy number

Symbol Name Standardized Value
LGALS7 lectin, galactoside-binding, soluble, 7 -3.21049
THRB thyroid hormone receptor, beta -3.21045
ABCC8 ATP-binding cassette, sub-family C (CFTR/MRP), member 8 -2.87318
ZFP2 ZFP2 zinc finger protein -2.74698
BICD1 bicaudal D homolog 1 (Drosophila) -2.59447
KCNJ11 potassium channel, inwardly rectifying subfamily J, member 11 -2.40015
DHX33 DEAH (Asp-Glu-Ala-His) box polypeptide 33 -2.16615
HS3ST4 heparan sulfate (glucosamine) 3-O-sulfotransferase 4 -2.05606
STX18-AS1 STX18 antisense RNA 1 (head to head) -1.99619
MLH1 mutL homolog 1 -1.97947
MIER2 mesoderm induction early response 1, family member 2 -1.97507
SEPT9 septin 9 -1.96514
ARID5B AT rich interactive domain 5B (MRF1-like) -1.92896
CDH23 cadherin-related 23 -1.92711
ARVCF armadillo repeat gene deleted in velocardiofacial syndrome -1.88741
LRRFIP2 leucine rich repeat (in FLII) interacting protein 2 -1.88726
ADK adenosine kinase -1.86055
LYPD6B LY6/PLAUR domain containing 6B -1.81111
CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 -1.80995
SLC5A12 solute carrier family 5 (sodium/monocarboxylate cotransporter), member 12 -1.68002
LIN7C lin-7 homolog C (C. elegans) -1.67688
BBOX1 butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1 -1.67687
CCDC34 coiled-coil domain containing 34 -1.67687
BDNF-AS BDNF antisense RNA -1.67684
FIBIN fin bud initiation factor homolog (zebrafish) -1.67597
BDNF brain-derived neurotrophic factor -1.64056
FSHB follicle stimulating hormone, beta polypeptide -1.62899
ARL14EP ADP-ribosylation factor-like 14 effector protein -1.62892
MUC15 mucin 15, cell surface associated -1.60928
MIR610 microRNA 610 -1.60657
KCNA4 potassium channel, voltage gated shaker related subfamily A, member 4 -1.59581
RNU6-16P RNA, U6 small nuclear 16, pseudogene -1.58361
KIF18A kinesin family member 18A -1.57596
LGR4 leucine-rich repeat containing G protein-coupled receptor 4 -1.5751
DCDC1 doublecortin domain containing 1 -1.57452
DCDC5 doublecortin domain containing 5 -1.56499
IMMP1L IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) -1.54232
FANCF Fanconi anemia, complementation group F -1.5138
CCDC179 coiled-coil domain containing 179 -1.51373
GAS2 growth arrest-specific 2 -1.51365
MPPED2 metallophosphoesterase domain containing 2 -1.51045
SVIP small VCP/p97-interacting protein -1.48793
UPK3B uroplakin 3B -1.47051
METTL15 methyltransferase like 15 -1.46815
SLC17A6 solute carrier family 17 (vesicular glutamate transporter), member 6 -1.46363
ANO5 anoctamin 5 -1.46363
EDA ectodysplasin A -1.44857
ANO3 anoctamin 3 -1.42657
LDHA lactate dehydrogenase A -1.424
SAA1 serum amyloid A1 -1.424
SAA3P serum amyloid A3 pseudogene -1.42399
SAA4 serum amyloid A4, constitutive -1.42399
SAAL1 serum amyloid A-like 1 -1.42399
SAA2-SAA4 SAA2-SAA4 readthrough -1.42399
LOC494141 solute carrier family 25, member 51 pseudogene -1.42399
MRGPRX3 MAS-related GPR, member X3 -1.42399
SAA2 serum amyloid A2 -1.42399
SRP9 signal recognition particle 9kDa -1.41847
PRMT3 protein arginine methyltransferase 3 -1.41652
HTATIP2 HIV-1 Tat interactive protein 2, 30kDa -1.41647
DBX1 developing brain homeobox 1 -1.40475
MRGPRX4 MAS-related GPR, member X4 -1.40342
KCNC1 potassium channel, voltage gated Shaw related subfamily C, member 1 -1.40341
MYOD1 myogenic differentiation 1 -1.4034
TPH1 tryptophan hydroxylase 1 -1.4034
LDHAL6A lactate dehydrogenase A-like 6A -1.40333
TMEM86A transmembrane protein 86A -1.40333
SPTY2D1-AS1 SPTY2D1 antisense RNA 1 -1.40333
SPTY2D1 SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae) -1.40333
IGSF22 immunoglobulin superfamily, member 22 -1.40333
UEVLD UEV and lactate/malate dehyrogenase domains -1.40333
TSG101 tumor susceptibility 101 -1.40333
USH1C Usher syndrome 1C (autosomal recessive, severe) -1.38971
MIR4694 microRNA 4694 -1.38517
LOC100126784 uncharacterized LOC100126784 -1.38517
MIR4486 microRNA 4486 -1.38517
LDHC lactate dehydrogenase C -1.38373
MRGPRX2 MAS-related GPR, member X2 -1.3834
GTF2H1 general transcription factor IIH, polypeptide 1, 62kDa -1.38323
FDPSP2 farnesyl diphosphate synthase pseudogene 2 -1.38318
C11ORF58 chromosome 11 open reading frame 58 -1.38291
NAV2-AS5 NAV2 antisense RNA 5 -1.38243
PIK3C2A phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha -1.38154
ELP4 elongator acetyltransferase complex subunit 4 -1.37351
HPS5 Hermansky-Pudlak syndrome 5 -1.36972
ZDHHC13 zinc finger, DHHC-type containing 13 -1.3647
DTX2 deltex 2, E3 ubiquitin ligase -1.36439
NUCB2 nucleobindin 2 -1.3632
NCR3LG1 natural killer cell cytotoxicity receptor 3 ligand 1 -1.36318
OR7E14P olfactory receptor, family 7, subfamily E, member 14 pseudogene -1.363
SERGEF secretion regulating guanine nucleotide exchange factor -1.34733
CSRP3 cysteine and glycine-rich protein 3 (cardiac LIM protein) -1.34682
E2F8 E2F transcription factor 8 -1.34606
RPS13 ribosomal protein S13 -1.34523
SLC25A21 solute carrier family 25 (mitochondrial oxoadipate carrier), member 21 -1.3444
SLC6A5 solute carrier family 6 (neurotransmitter transporter), member 5 -1.34105
DMBT1 deleted in malignant brain tumors 1 -1.34054
GPC5 glypican 5 -1.33612
NAV2-AS4 NAV2 antisense RNA 4 -1.32923
SOX6 SRY (sex determining region Y)-box 6 -1.32742
POTEF POTE ankyrin domain family, member F -1.32195