SNU175 Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description cell line derived from large_intestine (Cancer Cell Line Encyclopedia)
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Genes

126 genes with high or low copy number in SNU175 relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
FRRS1 ferric-chelate reductase 1 2.283
CCZ1B CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae) 1.9427
SPANXB1 SPANX family, member B1 1.83678
RPL23AP7 ribosomal protein L23a pseudogene 7 1.78304
SLIT3 slit homolog 3 (Drosophila) 1.72895
EYS eyes shut homolog (Drosophila) 1.68852
FAM86B2 family with sequence similarity 86, member B2 1.65767
DEFB4B defensin, beta 4B 1.58561
LOC100506990 uncharacterized LOC100506990 1.34875

low copy number

Symbol Name Standardized Value
PRKCE protein kinase C, epsilon -3.21049
EPAS1 endothelial PAS domain protein 1 -3.21049
KIR3DL3 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 3 -3.21049
BCO1 beta-carotene oxygenase 1 -3.21049
PNMA3 paraneoplastic Ma antigen 3 -3.21049
NUCLEOLIN nucleolin multifunctional protein -3.21049
AP3B1 adaptor-related protein complex 3, beta 1 subunit -3.21049
LOC388942 uncharacterized LOC388942 -2.65728
C2ORF91 chromosome 2 open reading frame 91 -2.6535
HCG22 HLA complex group 22 -2.59447
STAT5A signal transducer and activator of transcription 5A -2.59447
TMEM178A transmembrane protein 178A -2.5908
THUMPD2 THUMP domain containing 2 -2.58267
NPHS2 nephrosis 2, idiopathic, steroid-resistant (podocin) -2.58005
EBF4 early B-cell factor 4 -2.57157
LOC728819 -2.4661
CALM2 calmodulin 2 (phosphorylase kinase, delta) -2.46592
C2ORF61 chromosome 2 open reading frame 61 -2.46568
LHCGR luteinizing hormone/choriogonadotropin receptor -2.46555
STON1 stonin 1 -2.46528
DYNC2LI1 dynein, cytoplasmic 2, light intermediate chain 1 -2.4651
FOXN2 forkhead box N2 -2.46503
PPP1R21 protein phosphatase 1, regulatory subunit 21 -2.46485
ZFP36L2 ZFP36 ring finger protein-like 2 -2.43416
LINC01126 long intergenic non-protein coding RNA 1126 -2.43416
MTA3 metastasis associated 1 family, member 3 -2.42401
HAAO 3-hydroxyanthranilate 3,4-dioxygenase -2.42401
OXER1 oxoeicosanoid (OXE) receptor 1 -2.42391
COX7A2L cytochrome c oxidase subunit VIIa polypeptide 2 like -2.42349
PKDCC protein kinase domain containing, cytoplasmic -2.3747
MCFD2 multiple coagulation factor deficiency 2 -2.3701
LINC01118 long intergenic non-protein coding RNA 1118 -2.37
RHOQ ras homolog family member Q -2.37
PIGF phosphatidylinositol glycan anchor biosynthesis, class F -2.37
ATP6V1E2 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2 -2.37
LINC01119 long intergenic non-protein coding RNA 1119 -2.37
CRIPT cysteine-rich PDZ-binding protein -2.37
TMEM247 transmembrane protein 247 -2.36979
PLS3 plastin 3 -2.3514
ABCG5 ATP-binding cassette, sub-family G (WHITE), member 5 -2.28786
PTK2 protein tyrosine kinase 2 -2.28299
EPCAM epithelial cell adhesion molecule -2.2818
MIR559 microRNA 559 -2.2818
MSH6 mutS homolog 6 -2.27681
FBXO11 F-box protein 11 -2.27645
KCNG3 potassium channel, voltage gated modifier subfamily G, member 3 -2.25057
PPM1B protein phosphatase, Mg2+/Mn2+ dependent, 1B -2.23551
SIX3 SIX homeobox 3 -2.23551
SIX2 SIX homeobox 2 -2.23551
SLC3A1 solute carrier family 3 (amino acid transporter heavy chain), member 1 -2.23551
KRTAP19-8 keratin associated protein 19-8 -2.2305
LRPPRC leucine-rich pentatricopeptide repeat containing -2.2101
B3GALTL beta 1,3-galactosyltransferase-like -2.20992
FAM196B family with sequence similarity 196, member B -2.20551
TSPYL6 TSPY-like 6 -2.19563
LINC01121 long intergenic non-protein coding RNA 1121 -2.19491
PREPL prolyl endopeptidase-like -2.11687
SOCS5 suppressor of cytokine signaling 5 -2.0995
NFASC neurofascin -2.09288
SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A -2.09272
MICALCL MICAL C-terminal like -2.09233
LINC01192 long intergenic non-protein coding RNA 1192 -2.05981
ABCG8 ATP-binding cassette, sub-family G (WHITE), member 8 -2.05712
ABLIM2 actin binding LIM protein family, member 2 -2.0526
KCNK12 potassium channel, two pore domain subfamily K, member 12 -2.04429
EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit -2.03977
TDRD5 tudor domain containing 5 -2.01834
DOCK2 dedicator of cytokinesis 2 -2.00478
LOC728730 uncharacterized LOC728730 -2.00452
ACYP2 acylphosphatase 2, muscle type -1.99959
GIGYF2 GRB10 interacting GYF protein 2 -1.98987
KCNJ13 potassium channel, inwardly rectifying subfamily J, member 13 -1.98969
PLEKHH2 pleckstrin homology domain containing, family H (with MyTH4 domain) member 2 -1.97576
MIR548AD microRNA 548ad -1.94692
EML4 echinoderm microtubule associated protein like 4 -1.94651
SPRYD3 SPRY domain containing 3 -1.94209
TTC7A tetratricopeptide repeat domain 7A -1.92871
MSH2 mutS homolog 2 -1.88999
SRBD1 S1 RNA binding domain 1 -1.87502
SDCCAG8 serologically defined colon cancer antigen 8 -1.86697
CCDC141 coiled-coil domain containing 141 -1.8534
GAREM GRB2 associated, regulator of MAPK1 -1.82525
PTER phosphotriesterase related -1.82206
FSHR follicle stimulating hormone receptor -1.79076
ELMSAN1 ELM2 and Myb/SANT-like domain containing 1 -1.78989
ALPPL2 alkaline phosphatase, placental-like 2 -1.75602
ATXN1 ataxin 1 -1.72278
CNTNAP5 contactin associated protein-like 5 -1.72097
TPSG1 tryptase gamma 1 -1.71613
SAMD5 sterile alpha motif domain containing 5 -1.71355
STON1-GTF2A1L STON1-GTF2A1L readthrough -1.7051
GTF2A1L general transcription factor IIA, 1-like -1.70509
TMEM185A transmembrane protein 185A -1.68778
DPYD dihydropyrimidine dehydrogenase -1.66052
LYPD6B LY6/PLAUR domain containing 6B -1.6469
EYA2 EYA transcriptional coactivator and phosphatase 2 -1.64325
RAD51B RAD51 paralog B -1.63989
CACNA1H calcium channel, voltage-dependent, T type, alpha 1H subunit -1.60634
PSD2 pleckstrin and Sec7 domain containing 2 -1.58565
CAMKMT calmodulin-lysine N-methyltransferase -1.58271
SPANXA2-OT1 SPANXA2 overlapping transcript 1 -1.57548
GRAMD4 GRAM domain containing 4 -1.55948
HDAC4 histone deacetylase 4 -1.54053
THADA thyroid adenoma associated -1.51613
TMPRSS11E transmembrane protease, serine 11E -1.45583
PKD1L2 polycystic kidney disease 1-like 2 (gene/pseudogene) -1.45333
OPCML opioid binding protein/cell adhesion molecule-like -1.42405
SNX7 sorting nexin 7 -1.41603
SCARA5 scavenger receptor class A, member 5 -1.39911
GPC6 glypican 6 -1.37887
PSTPIP1 proline-serine-threonine phosphatase interacting protein 1 -1.37233
GRID1 glutamate receptor, ionotropic, delta 1 -1.36596
LINC00469 long intergenic non-protein coding RNA 469 -1.36249
DHX38 DEAH (Asp-Glu-Ala-His) box polypeptide 38 -1.35223
SMYD3 SET and MYND domain containing 3 -1.33351
NTM neurotrimin -1.33244
ERCC2 excision repair cross-complementation group 2 -1.32076