SNU81 Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description cell line derived from large_intestine (Cancer Cell Line Encyclopedia)
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Genes

81 genes with high or low copy number in SNU81 relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
LINC00693 long intergenic non-protein coding RNA 693 1.90478
NEK10 NIMA-related kinase 10 1.86241
SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 1.85427
EOMES eomesodermin 1.8539
AZI2 5-azacytidine induced 2 1.80492
CMC1 C-x(9)-C motif containing 1 1.80438
EIF1B eukaryotic translation initiation factor 1B 1.7979
LARP1B La ribonucleoprotein domain family, member 1B 1.79275
PGRMC2 progesterone receptor membrane component 2 1.79273
ENTPD3-AS1 ENTPD3 antisense RNA 1 1.77647
ZNF619 zinc finger protein 619 1.77646
ZNF621 zinc finger protein 621 1.77646
ZNF620 zinc finger protein 620 1.77646
ENTPD3 ectonucleoside triphosphate diphosphohydrolase 3 1.77646
RPL14 ribosomal protein L14 1.77642
H3F3AP4 H3 histone, family 3A, pseudogene 4 1.77555
LOC221122 uncharacterized LOC221122 1.76884
TP53I11 tumor protein p53 inducible protein 11 1.76866
NYAP2 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 1.7643
ZCWPW2 zinc finger, CW type with PWWP domain 2 1.75326
ULK4 unc-51 like kinase 4 1.7237
EIF1B-AS1 EIF1B antisense RNA 1 1.71014
MYRIP myosin VIIA and Rab interacting protein 1.69934
OR52E4 olfactory receptor, family 52, subfamily E, member 4 1.68317
MLPH melanophilin 1.66325
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 1.62608
DUSP22 dual specificity phosphatase 22 1.62589
LRP4 low density lipoprotein receptor-related protein 4 1.57485
LRP4-AS1 LRP4 antisense RNA 1 1.57406
CKAP5 cytoskeleton associated protein 5 1.49464
LOC100288069 uncharacterized LOC100288069 1.48994
TSPAN8 tetraspanin 8 1.47682
SNORD67 small nucleolar RNA, C/D box 67 1.42725
OR11H2 olfactory receptor, family 11, subfamily H, member 2 1.41317
MIR5582 microRNA 5582 1.40641
RAPGEF4 Rap guanine nucleotide exchange factor (GEF) 4 1.3923
CCDC105 coiled-coil domain containing 105 1.38695
LOC100132352 FSHD region gene 1 pseudogene 1.37789
OR4K1 olfactory receptor, family 4, subfamily K, member 1 1.36509
OR4K5 olfactory receptor, family 4, subfamily K, member 5 1.36466
OR4M1 olfactory receptor, family 4, subfamily M, member 1 1.36414
OR4Q3 olfactory receptor, family 4, subfamily Q, member 3 1.36412
OR4K2 olfactory receptor, family 4, subfamily K, member 2 1.36318
OR4N2 olfactory receptor, family 4, subfamily N, member 2 1.36265
ZAK sterile alpha motif and leucine zipper containing kinase AZK 1.35632
CASP14 caspase 14, apoptosis-related cysteine peptidase 1.35393
ZNF408 zinc finger protein 408 1.34884
F2 coagulation factor II (thrombin) 1.3396
OR1I1 olfactory receptor, family 1, subfamily I, member 1 1.33627

low copy number

Symbol Name Standardized Value
MCHR2-AS1 MCHR2 antisense RNA 1 -3.21049
C9ORF171 chromosome 9 open reading frame 171 -3.21049
UBL4A ubiquitin-like 4A -3.0646
GLRA2 glycine receptor, alpha 2 -2.59447
RMDN2 regulator of microtubule dynamics 2 -2.42587
PDE1C phosphodiesterase 1C, calmodulin-dependent 70kDa -2.3694
NHSL2 NHS-like 2 -2.3514
OR52N1 olfactory receptor, family 52, subfamily N, member 1 -2.27991
OR52N5 olfactory receptor, family 52, subfamily N, member 5 -2.27656
LILRA3 leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 3 -2.20027
ARHGAP21 Rho GTPase activating protein 21 -2.14128
ADCY2 adenylate cyclase 2 (brain) -2.12264
PLCXD3 phosphatidylinositol-specific phospholipase C, X domain containing 3 -2.11643
C9ORF153 chromosome 9 open reading frame 153 -2.07392
ELOVL2-AS1 ELOVL2 antisense RNA 1 -2.02977
CLTCL1 clathrin, heavy chain-like 1 -2.00401
MPG N-methylpurine-DNA glycosylase -1.9252
ATP13A4 ATPase type 13A4 -1.91156
SIL1 SIL1 nucleotide exchange factor -1.88075
CD36 CD36 molecule (thrombospondin receptor) -1.87077
RHBDF1 rhomboid 5 homolog 1 (Drosophila) -1.86039
TMPRSS11E transmembrane protease, serine 11E -1.85867
HBZ hemoglobin, zeta -1.83162
COL6A3 collagen, type VI, alpha 3 -1.82086
PIP4K2A phosphatidylinositol-5-phosphate 4-kinase, type II, alpha -1.79261
NPRL3 nitrogen permease regulator-like 3 (S. cerevisiae) -1.78055
BANP BTG3 associated nuclear protein -1.77142
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -1.72599
CYP4F12 cytochrome P450, family 4, subfamily F, polypeptide 12 -1.71692
CERS6 ceramide synthase 6 -1.58038
KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog -1.37341
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) -1.37079