SW1088 Gene Set

Dataset CCLE Cell Line Gene Expression Profiles
Category transcriptomics
Type cell line
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Genes

234 genes with high or low expression in SW1088 relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.

high expression

Symbol Name Standardized Value
CCDC89 coiled-coil domain containing 89 3.15475
CSF1 colony stimulating factor 1 (macrophage) 2.56735
DHX29 DEAH (Asp-Glu-Ala-His) box polypeptide 29 2.27462
ZNF471 zinc finger protein 471 2.25602
CSMD2 CUB and Sushi multiple domains 2 2.25274
PCDHGB7 protocadherin gamma subfamily B, 7 2.15361
HDAC3 histone deacetylase 3 2.09427
C7ORF25 chromosome 7 open reading frame 25 1.97738
SLC14A1 solute carrier family 14 (urea transporter), member 1 (Kidd blood group) 1.97249
CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39) 1.97153
PCDHB16 protocadherin beta 16 1.94001
MMP3 matrix metallopeptidase 3 1.93932
MROH9 maestro heat-like repeat family member 9 1.92235
SOGA1 suppressor of glucose, autophagy associated 1 1.89811
RHOBTB3 Rho-related BTB domain containing 3 1.88883
PTTG3P pituitary tumor-transforming 3, pseudogene 1.85802
IL7R interleukin 7 receptor 1.85591
SPOCD1 SPOC domain containing 1 1.84789
ABLIM3 actin binding LIM protein family, member 3 1.78688
BOD1 biorientation of chromosomes in cell division 1 1.7849
DNAJC25 DnaJ (Hsp40) homolog, subfamily C , member 25 1.75918
C1ORF94 chromosome 1 open reading frame 94 1.75839
DCTN3 dynactin 3 (p22) 1.74195
S1PR3 sphingosine-1-phosphate receptor 3 1.73406
LRRC37A5P leucine rich repeat containing 37, member A5, pseudogene 1.73275
TMCO4 transmembrane and coiled-coil domains 4 1.72639
TBC1D9B TBC1 domain family, member 9B (with GRAM domain) 1.69486
TRIM23 tripartite motif containing 23 1.68779
ROS1 ROS proto-oncogene 1 , receptor tyrosine kinase 1.68406
SLC16A2 solute carrier family 16, member 2 (thyroid hormone transporter) 1.66965
SYNC syncoilin, intermediate filament protein 1.64263
CCDC102B coiled-coil domain containing 102B 1.63342
IPP intracisternal A particle-promoted polypeptide 1.61685
CMBL carboxymethylenebutenolidase homolog (Pseudomonas) 1.59541
HIGD1B HIG1 hypoxia inducible domain family, member 1B 1.58615
USB1 U6 snRNA biogenesis 1 1.58544
CXXC5 CXXC finger protein 5 1.57302
NSAP11 nervous system abundant protein 11 1.56393
NDUFS4 NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) 1.55393
TEX261 testis expressed 261 1.54329
MOCS2 molybdenum cofactor synthesis 2 1.5333
ZSCAN31 zinc finger and SCAN domain containing 31 1.50839
SLC25A18 solute carrier family 25 (glutamate carrier), member 18 1.499
ELMOD3 ELMO/CED-12 domain containing 3 1.4982
BCL3 B-cell CLL/lymphoma 3 1.48637
FBXL16 F-box and leucine-rich repeat protein 16 1.47866
C9ORF47 chromosome 9 open reading frame 47 1.47711
ASB5 ankyrin repeat and SOCS box containing 5 1.47556
POLD2 polymerase (DNA directed), delta 2, accessory subunit 1.47223
UGT1A8 UDP glucuronosyltransferase 1 family, polypeptide A8 1.47115
GCK glucokinase (hexokinase 4) 1.47003
KIF20A kinesin family member 20A 1.46965
RPL3L ribosomal protein L3-like 1.46129
CCL26 chemokine (C-C motif) ligand 26 1.45085
RAD1 RAD1 checkpoint DNA exonuclease 1.44797
LOC257396 uncharacterized LOC257396 1.44531
SOST sclerostin 1.43534
CYP2C8 cytochrome P450, family 2, subfamily C, polypeptide 8 1.43164
ZNF677 zinc finger protein 677 1.42757
GLIS1 GLIS family zinc finger 1 1.42283
NKX2-5 NK2 homeobox 5 1.42212
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 1.42146
AKAP14 A kinase (PRKA) anchor protein 14 1.41167
HSPB3 heat shock 27kDa protein 3 1.40824
TNS3 tensin 3 1.40091
BLVRA biliverdin reductase A 1.40008
ERCC8 excision repair cross-complementation group 8 1.39877
C1QTNF2 C1q and tumor necrosis factor related protein 2 1.38698
YKT6 YKT6 v-SNARE homolog (S. cerevisiae) 1.37578
FAM46B family with sequence similarity 46, member B 1.37469
KCTD4 potassium channel tetramerization domain containing 4 1.37224
IL7 interleukin 7 1.37204
FAM20C family with sequence similarity 20, member C 1.37153
RSPO3 R-spondin 3 1.36708
B4GALT7 xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 1.36153
UBE2D4 ubiquitin-conjugating enzyme E2D 4 (putative) 1.3588
MAVS mitochondrial antiviral signaling protein 1.35819
KIAA1191 KIAA1191 1.35752
LPA lipoprotein, Lp(a) 1.35668

low expression

Symbol Name Standardized Value
DUS1L dihydrouridine synthase 1-like (S. cerevisiae) -3.9989
ATAD1 ATPase family, AAA domain containing 1 -3.3866
TRAF6 TNF receptor-associated factor 6, E3 ubiquitin protein ligase -3.18713
LIPA lipase A, lysosomal acid, cholesterol esterase -2.98772
LOC100507600 uncharacterized LOC100507600 -2.90516
SMIM8 small integral membrane protein 8 -2.73492
LOC100506016 uncharacterized LOC100506016 -2.42382
LINC00473 long intergenic non-protein coding RNA 473 -2.39922
TPTE2P6 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 6 -2.32653
KLHL9 kelch-like family member 9 -2.28658
RNF149 ring finger protein 149 -2.28443
RYR3 ryanodine receptor 3 -2.24402
HPS1 Hermansky-Pudlak syndrome 1 -2.23511
OR1F2P olfactory receptor, family 1, subfamily F, member 2, pseudogene -2.2328
OR51B6 olfactory receptor, family 51, subfamily B, member 6 -2.16376
DAW1 dynein assembly factor with WDR repeat domains 1 -2.12929
CT83 cancer/testis antigen 83 -2.12809
TPH2 tryptophan hydroxylase 2 -2.11261
CHST9 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9 -2.09736
NAT8B N-acetyltransferase 8B (GCN5-related, putative, gene/pseudogene) -2.09711
CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle) -2.09544
ARHGEF4 Rho guanine nucleotide exchange factor (GEF) 4 -2.07798
LPAL2 lipoprotein, Lp(a)-like 2, pseudogene -2.07027
CAPN11 calpain 11 -2.06755
HAND2 heart and neural crest derivatives expressed 2 -2.06566
B3GNT8 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8 -2.064
ACOXL acyl-CoA oxidase-like -2.05757
TFAP2D transcription factor AP-2 delta (activating enhancer binding protein 2 delta) -2.04429
ARHGAP19-SLIT1 ARHGAP19-SLIT1 readthrough (NMD candidate) -2.04198
DGKQ diacylglycerol kinase, theta 110kDa -2.03802
ACBD4 acyl-CoA binding domain containing 4 -2.03791
TNFRSF11A tumor necrosis factor receptor superfamily, member 11a, NFKB activator -2.03143
PIK3CG phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma -2.02826
TBATA thymus, brain and testes associated -2.02815
GPR52 G protein-coupled receptor 52 -2.01458
REN renin -1.97501
LHFPL3 lipoma HMGIC fusion partner-like 3 -1.97095
WDR64 WD repeat domain 64 -1.94287
IVNS1ABP influenza virus NS1A binding protein -1.94077
FDCSP follicular dendritic cell secreted protein -1.9342
KRT40 keratin 40, type I -1.92695
PLAA phospholipase A2-activating protein -1.92658
HSPB2 heat shock 27kDa protein 2 -1.92217
SPINK7 serine peptidase inhibitor, Kazal type 7 (putative) -1.92143
USP3 ubiquitin specific peptidase 3 -1.91101
CAAP1 caspase activity and apoptosis inhibitor 1 -1.90561
B3GAT1 beta-1,3-glucuronyltransferase 1 -1.89771
GJA10 gap junction protein, alpha 10, 62kDa -1.89512
RGS10 regulator of G-protein signaling 10 -1.88254
ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) -1.87677
PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 -1.87622
GRM8 glutamate receptor, metabotropic 8 -1.86771
SLC12A6 solute carrier family 12 (potassium/chloride transporter), member 6 -1.86655
TAS2R16 taste receptor, type 2, member 16 -1.86378
CCDC65 coiled-coil domain containing 65 -1.85762
KLHL11 kelch-like family member 11 -1.85417
TCEB3B transcription elongation factor B polypeptide 3B (elongin A2) -1.83896
RSL24D1 ribosomal L24 domain containing 1 -1.83651
ZC3H11A zinc finger CCCH-type containing 11A -1.83129
RNF139 ring finger protein 139 -1.83099
CELA3B chymotrypsin-like elastase family, member 3B -1.8124
FLJ33360 FLJ33360 protein -1.80033
UROC1 urocanate hydratase 1 -1.79959
NRCAM neuronal cell adhesion molecule -1.79461
C6ORF15 chromosome 6 open reading frame 15 -1.78363
ASIC3 acid sensing (proton gated) ion channel 3 -1.76952
OCLM oculomedin -1.76934
PDZD9 PDZ domain containing 9 -1.76914
IQCF2 IQ motif containing F2 -1.75991
LINC00116 long intergenic non-protein coding RNA 116 -1.75912
RNASE11 ribonuclease, RNase A family, 11 (non-active) -1.75165
PHYHIP phytanoyl-CoA 2-hydroxylase interacting protein -1.74693
ATOH7 atonal homolog 7 (Drosophila) -1.74614
VRK2 vaccinia related kinase 2 -1.74266
STAMBPL1 STAM binding protein-like 1 -1.73755
E2F5 E2F transcription factor 5, p130-binding -1.72232
DCST1 DC-STAMP domain containing 1 -1.71525
ULBP1 UL16 binding protein 1 -1.71341
PIH1D1 PIH1 domain containing 1 -1.70961
SNAPC5 small nuclear RNA activating complex, polypeptide 5, 19kDa -1.70939
IGSF1 immunoglobulin superfamily, member 1 -1.70898
TMEM204 transmembrane protein 204 -1.70663
RGL4 ral guanine nucleotide dissociation stimulator-like 4 -1.70487
SLC25A45 solute carrier family 25, member 45 -1.68903
MRPL9 mitochondrial ribosomal protein L9 -1.68198
IFT74 intraflagellar transport 74 -1.67499
FSCB fibrous sheath CABYR binding protein -1.67083
IDI2 isopentenyl-diphosphate delta isomerase 2 -1.67
CHAC1 ChaC glutathione-specific gamma-glutamylcyclotransferase 1 -1.66587
ECRP ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin) pseudogene -1.64868
SLC25A2 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2 -1.64292
NLRP7 NLR family, pyrin domain containing 7 -1.64282
MIA2 melanoma inhibitory activity 2 -1.63939
SDE2 SDE2 telomere maintenance homolog (S. pombe) -1.63408
TRAT1 T cell receptor associated transmembrane adaptor 1 -1.63351
LOC51145 uncharacterized LOC51145 -1.62657
LOC100286922 DnaJ (Hsp40) homolog, subfamily B, member 3 pseudogene -1.61497
PTEN phosphatase and tensin homolog -1.61444
PHKA1-AS1 PHKA1 antisense RNA 1 -1.61167
TBX5 T-box 5 -1.60896
CATSPER2 cation channel, sperm associated 2 -1.60431
GPIHBP1 glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 -1.5975
NOP10 NOP10 ribonucleoprotein -1.59676
NKG7 natural killer cell granule protein 7 -1.59588
H2AFJ H2A histone family, member J -1.58021
SSTR4 somatostatin receptor 4 -1.56967
KCNAB1 potassium channel, voltage gated subfamily A regulatory beta subunit 1 -1.56845
SPCS2 signal peptidase complex subunit 2 homolog (S. cerevisiae) -1.56751
CDH12 cadherin 12, type 2 (N-cadherin 2) -1.56589
CPB1 carboxypeptidase B1 (tissue) -1.56103
SLC9A2 solute carrier family 9, subfamily A (NHE2, cation proton antiporter 2), member 2 -1.55098
ERBB4 erb-b2 receptor tyrosine kinase 4 -1.54732
RIPK3 receptor-interacting serine-threonine kinase 3 -1.54451
DLG3 discs, large homolog 3 (Drosophila) -1.54219
SPAG6 sperm associated antigen 6 -1.54019
OR8G2 olfactory receptor, family 8, subfamily G, member 2 -1.53927
MYCL v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog -1.53872
REG3G regenerating islet-derived 3 gamma -1.5383
MYO1G myosin IG -1.53287
LOC100505918 uncharacterized LOC100505918 -1.53219
DUOX1 dual oxidase 1 -1.52868
MESDC1 mesoderm development candidate 1 -1.52562
WNT2B wingless-type MMTV integration site family, member 2B -1.51983
SIAH2 siah E3 ubiquitin protein ligase 2 -1.51919
HAL histidine ammonia-lyase -1.51703
H2AFY2 H2A histone family, member Y2 -1.51619
ACER1 alkaline ceramidase 1 -1.51319
ARMC3 armadillo repeat containing 3 -1.51272
NEUROD4 neuronal differentiation 4 -1.51089
CLDN5 claudin 5 -1.51082
UTS2 urotensin 2 -1.50956
FAM186A family with sequence similarity 186, member A -1.50697
C6ORF165 chromosome 6 open reading frame 165 -1.50478
BRD1 bromodomain containing 1 -1.5032
MESP2 mesoderm posterior basic helix-loop-helix transcription factor 2 -1.50102
CLDN18 claudin 18 -1.4999
CLK2 CDC-like kinase 2 -1.49939
NYAP1 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1 -1.49233
CD3G CD3g molecule, gamma (CD3-TCR complex) -1.49106
CHSY3 chondroitin sulfate synthase 3 -1.48922
TMEM117 transmembrane protein 117 -1.48733
ISM2 isthmin 2 -1.48625
RNPEPL1 arginyl aminopeptidase (aminopeptidase B)-like 1 -1.4843
SI sucrase-isomaltase (alpha-glucosidase) -1.47632
LCE1B late cornified envelope 1B -1.47502
TLR10 toll-like receptor 10 -1.47384
MGMT O-6-methylguanine-DNA methyltransferase -1.47383
PTP4A1 protein tyrosine phosphatase type IVA, member 1 -1.47255
OLIG2 oligodendrocyte lineage transcription factor 2 -1.46817
GAD2 glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) -1.46814
LOC389906 zinc finger protein 839 pseudogene -1.46573
NRK Nik related kinase -1.46424
ANKS1B ankyrin repeat and sterile alpha motif domain containing 1B -1.46278
HTR5A 5-hydroxytryptamine (serotonin) receptor 5A, G protein-coupled -1.45895
ZNF296 zinc finger protein 296 -1.45167