SW1116 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

130 genes with high or low copy number in SW1116 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
MTUS2 microtubule associated tumor suppressor candidate 2 2.93899
SLC7A1 solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 2.93899
SLC46A3 solute carrier family 46, member 3 2.93899
MTUS2-AS1 MTUS2 antisense RNA 1 2.93899
UBL3 ubiquitin-like 3 2.93899
TPTE2P6 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 6 2.76305
KATNAL1 katanin p60 subunit A-like 1 2.76305
GSX1 GS homeobox 1 2.76305
LNX2 ligand of numb-protein X 2 2.76305
TEX26-AS1 TEX26 antisense RNA 1 2.76305
HSPH1 heat shock 105kDa/110kDa protein 1 2.76305
POLR1D polymerase (RNA) I polypeptide D, 16kDa 2.76305
B3GALTL beta 1,3-galactosyltransferase-like 2.76305
SHISA2 shisa family member 2 2.76305
RNF6 ring finger protein (C3H2C3 type) 6 2.76305
CENPJ centromere protein J 2.76305
PAN3-AS1 PAN3 antisense RNA 1 2.76305
HMGB1 high mobility group box 1 2.76305
RXFP2 relaxin/insulin-like family peptide receptor 2 2.76305
RNF17 ring finger protein 17 2.76305
TPTE2P1 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1 2.76305
RPL21 ribosomal protein L21 2.76305
LINC00426 long intergenic non-protein coding RNA 426 2.76305
ZAR1L zygote arrest 1-like 2.76305
FRY furry homolog (Drosophila) 2.76305
PABPC3 poly(A) binding protein, cytoplasmic 3 2.76305
NUPL1 nucleoporin like 1 2.76305
C1QTNF9 C1q and tumor necrosis factor related protein 9 2.76305
LINC00544 long intergenic non-protein coding RNA 544 2.76305
CDK8 cyclin-dependent kinase 8 2.76305
MTMR6 myotubularin related protein 6 2.76305
ATP12A ATPase, H+/K+ transporting, nongastric, alpha polypeptide 2.76305
MEDAG mesenteric estrogen-dependent adipogenesis 2.76305
POMP proteasome maturation protein 2.76305
FLT3 fms-related tyrosine kinase 3 2.76305
RFC3 replication factor C (activator 1) 3, 38kDa 2.76305
PARP4 poly (ADP-ribose) polymerase family, member 4 2.76305
GTF3A general transcription factor IIIA 2.76305
SPATA13 spermatogenesis associated 13 2.76305
LINC00297 long intergenic non-protein coding RNA 297 2.76305
USP12 ubiquitin specific peptidase 12 2.76305
RASL11A RAS-like, family 11, member A 2.76305
MTIF3 mitochondrial translational initiation factor 3 2.76305
TEX26 testis expressed 26 2.76305
MIR2276 microRNA 2276 2.76305
SPATA13-AS1 SPATA13 antisense RNA 1 2.76305
LINC00398 long intergenic non-protein coding RNA 398 2.76305
GPR12 G protein-coupled receptor 12 2.76305
SNORD102 small nucleolar RNA, C/D box 102 2.76305
ALOX5AP arachidonate 5-lipoxygenase-activating protein 2.76305
AMER2 APC membrane recruitment protein 2 2.76305
SNORA27 small nucleolar RNA, H/ACA box 27 2.64759
N4BP2L2-IT2 N4BPL2 intronic transcript 2 2.64759
ATP8A2 ATPase, aminophospholipid transporter, class I, type 8A, member 2 2.64759
ATP5EP2 ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2 2.64759
CDX2 caudal type homeobox 2 2.64759
MINOS1P1 mitochondrial inner membrane organizing system 1 pseudogene 1 2.64759
PDX1 pancreatic and duodenal homeobox 1 2.64759
BRCA2 breast cancer 2, early onset 2.64759
N4BP2L1 NEDD4 binding protein 2-like 1 2.64759
N4BP2L2 NEDD4 binding protein 2-like 2 2.64759
PDS5B PDS5 cohesin associated factor B 2.59653
STARD13 StAR-related lipid transfer (START) domain containing 13 2.59653
LINC00423 long intergenic non-protein coding RNA 423 2.59653
KL klotho 2.59653
STARD13-AS STARD13 antisense RNA 2.59653
C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 2.39327
RPA3 replication protein A3, 14kDa 2.35236
MIOS missing oocyte, meiosis regulator, homolog (Drosophila) 2.35236
COL28A1 collagen, type XXVIII, alpha 1 2.3178
GLCCI1 glucocorticoid induced 1 2.3178
NDUFA4 NDUFA4, mitochondrial complex associated 2.30944
ICA1 islet cell autoantigen 1, 69kDa 2.30944
NXPH1 neurexophilin 1 2.30944
PHF14 PHD finger protein 14 2.30944
TMEM106B transmembrane protein 106B 2.25904
VWDE von Willebrand factor D and EGF domains 2.25904
THSD7A thrombospondin, type I, domain containing 7A 2.24845
PER4 period circadian clock 3 pseudogene 2.24139
GJA3 gap junction protein, alpha 3, 46kDa 2.14626
GJB6 gap junction protein, beta 6, 30kDa 2.14508
GJB2 gap junction protein, beta 2, 26kDa 2.14508
CRYL1 crystallin, lambda 1 2.14508
EEF1DP3 eukaryotic translation elongation factor 1 delta pseudogene 3 2.14135
MIR4499 microRNA 4499 2.14116
PSPC1 paraspeckle component 1 2.13646
ZMYM2 zinc finger, MYM-type 2 2.13646
MPHOSPH8 M-phase phosphoprotein 8 2.13622
ZMYM5 zinc finger, MYM-type 5 2.13622
LATS2 large tumor suppressor kinase 2 2.1339
IFT88 intraflagellar transport 88 2.1316
LINC00424 long intergenic non-protein coding RNA 424 2.12931
XPO4 exportin 4 2.12931
FGF9 fibroblast growth factor 9 2.12931
IL17D interleukin 17D 2.12931
N6AMT2 N-6 adenine-specific DNA methyltransferase 2 (putative) 2.12931
SKA3 spindle and kinetochore associated complex subunit 3 2.12703
MIPEPP3 mitochondrial intermediate peptidase pseudogene 3 2.12703
SGCG sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein) 2.12703
LINC00327 long intergenic non-protein coding RNA 327 2.12703
SACS-AS1 SACS antisense RNA 1 2.12703
ZDHHC20 zinc finger, DHHC-type containing 20 2.12703
BASP1P1 brain abundant, membrane attached signal protein 1 pseudogene 1 2.12703
SAP18 Sin3A-associated protein, 18kDa 2.12703
MICU2 mitochondrial calcium uptake 2 2.12703
TNFRSF19 tumor necrosis factor receptor superfamily, member 19 2.12703
SACS sacsin molecular chaperone 2.12703
LINC00417 long intergenic non-protein coding RNA 417 2.12548
LINC00421 long intergenic non-protein coding RNA 421 2.12527
C1QTNF9B-AS1 C1QTNF9B antisense RNA 1 2.12225
PAN3 PAN3 poly(A) specific ribonuclease subunit 2.12225
MIPEP mitochondrial intermediate peptidase 2.12225
C1QTNF9B C1q and tumor necrosis factor related protein 9B 2.12225
FLT1 fms-related tyrosine kinase 1 2.12225
WASF3 WAS protein family, member 3 2.12225
USPL1 ubiquitin specific peptidase like 1 2.12225
ANKRD20A19P ankyrin repeat domain 20 family, member A19, pseudogene 2.12225
ANKRD20A9P ankyrin repeat domain 20 family, member A9, pseudogene 2.11467
ANKRD26P3 ankyrin repeat domain 26 pseudogene 3 2.11467
TPTE2 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 2.11435
RNU6-52P RNA, U6 small nuclear 52, pseudogene 2.10548
LINC00442 long intergenic non-protein coding RNA 442 2.10548
TUBA3C tubulin, alpha 3c 2.09826

low copy number

Symbol Name Standardized Value
APOD apolipoprotein D -3.16503
SDHAP2 succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2 -3.00965
FAM86DP family with sequence similarity 86, member D, pseudogene -2.84592
AMY2A amylase, alpha 2A (pancreatic) -2.81685
AMY1A amylase, alpha 1A (salivary) -2.81685
FFAR3 free fatty acid receptor 3 -2.76158
HCG4B HLA complex group 4B (non-protein coding) -2.75184