SW1990 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

215 genes with high or low copy number in SW1990 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
PSORS1C1 psoriasis susceptibility 1 candidate 1 4.51153
SNORD84 small nucleolar RNA, C/D box 84 4.51153
NRM nurim (nuclear envelope membrane protein) 4.51153
NFKBIL1 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1 4.51153
HCG27 HLA complex group 27 (non-protein coding) 4.51153
DDR1 discoidin domain receptor tyrosine kinase 1 4.51153
ATP6V1G2-DDX39B ATP6V1G2-DDX39B readthrough (NMD candidate) 4.51153
MIR4640 microRNA 4640 4.51153
VARS2 valyl-tRNA synthetase 2, mitochondrial 4.51153
PPP1R18 protein phosphatase 1, regulatory subunit 18 4.51153
MCCD1 mitochondrial coiled-coil domain 1 4.51153
C6ORF15 chromosome 6 open reading frame 15 4.51153
C6ORF10 chromosome 6 open reading frame 10 4.51153
IER3 immediate early response 3 4.51153
HLA-DQA2 major histocompatibility complex, class II, DQ alpha 2 4.51153
HLA-DQA1 major histocompatibility complex, class II, DQ alpha 1 4.51153
RNF5 ring finger protein 5, E3 ubiquitin protein ligase 4.51153
MUC21 mucin 21, cell surface associated 4.51153
PPT2-EGFL8 PPT2-EGFL8 readthrough (NMD candidate) 4.51153
PSORS1C3 psoriasis susceptibility 1 candidate 3 (non-protein coding) 4.51153
PSORS1C2 psoriasis susceptibility 1 candidate 2 4.51153
HLA-C major histocompatibility complex, class I, C 4.51153
DDX39B DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 4.51153
AGPAT1 1-acylglycerol-3-phosphate O-acyltransferase 1 4.51153
POU5F1 POU class 5 homeobox 1 4.51153
TCF19 transcription factor 19 4.51153
FLOT1 flotillin 1 4.51153
PBX2 pre-B-cell leukemia homeobox 2 4.51153
TUBB tubulin, beta class I 4.51153
TNF tumor necrosis factor 4.51153
MUC22 mucin 22 4.51153
BTNL2 butyrophilin-like 2 4.51153
HCG22 HLA complex group 22 4.51153
HCG23 HLA complex group 23 (non-protein coding) 4.51153
PPT2 palmitoyl-protein thioesterase 2 4.51153
HLA-DOB major histocompatibility complex, class II, DO beta 4.51153
LOC100507547 uncharacterized LOC100507547 4.51153
PSMB8 proteasome (prosome, macropain) subunit, beta type, 8 4.51153
TAP1 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) 4.51153
TAP2 transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) 4.51153
SFTA2 surfactant associated 2 4.51153
PRRT1 proline-rich transmembrane protein 1 4.51153
NOTCH4 notch 4 4.51153
CDSN corneodesmosin 4.51153
LTA lymphotoxin alpha 4.51153
ATP6V1G2 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G2 4.51153
GPSM3 G-protein signaling modulator 3 4.51153
CCHCR1 coiled-coil alpha-helical rod protein 1 4.51153
GTF2H4 general transcription factor IIH, polypeptide 4, 52kDa 4.51153
DPCR1 diffuse panbronchiolitis critical region 1 4.51153
MDC1 mediator of DNA-damage checkpoint 1 4.51153
HLA-DQB2 major histocompatibility complex, class II, DQ beta 2 4.51153
AGER advanced glycosylation end product-specific receptor 4.51153
HLA-DQB1 major histocompatibility complex, class II, DQ beta 1 4.51153
SNORD117 small nucleolar RNA, C/D box 117 4.51153
FKBPL FK506 binding protein like 4.51153
HLA-DRA major histocompatibility complex, class II, DR alpha 4.51153
EGFL8 EGF-like-domain, multiple 8 4.51153
TRIM31 tripartite motif containing 31 3.12177
NELFE negative elongation factor complex member E 3.12177
SKIV2L superkiller viralicidic activity 2-like (S. cerevisiae) 3.12177
CYP21A2 cytochrome P450, family 21, subfamily A, polypeptide 2 3.12177
PRRC2A proline-rich coiled-coil 2A 3.12177
LY6G5B lymphocyte antigen 6 complex, locus G5B 3.12177
CSNK2B casein kinase 2, beta polypeptide 3.12177
DDAH2 dimethylarginine dimethylaminohydrolase 2 3.12177
HLA-E major histocompatibility complex, class I, E 3.12177
C6ORF47 chromosome 6 open reading frame 47 3.12177
LST1 leukocyte specific transcript 1 3.12177
LY6G5C lymphocyte antigen 6 complex, locus G5C 3.12177
SLC44A4 solute carrier family 44, member 4 3.12177
LY6G6F lymphocyte antigen 6 complex, locus G6F 3.12177
SNORD52 small nucleolar RNA, C/D box 52 3.12177
PPP1R10 protein phosphatase 1, regulatory subunit 10 3.12177
ZBTB12 zinc finger and BTB domain containing 12 3.12177
GNL1 guanine nucleotide binding protein-like 1 3.12177
C4B_2 complement component 4B (Chido blood group), copy 2 3.12177
ABHD16A abhydrolase domain containing 16A 3.12177
C4A complement component 4A (Rodgers blood group) 3.12177
TRIM15 tripartite motif containing 15 3.12177
ABCF1 ATP-binding cassette, sub-family F (GCN20), member 1 3.12177
C6ORF48 chromosome 6 open reading frame 48 3.12177
NEU1 sialidase 1 (lysosomal sialidase) 3.12177
LTB lymphotoxin beta (TNF superfamily, member 3) 3.12177
C2 complement component 2 3.12177
MSH5-SAPCD1 MSH5-SAPCD1 readthrough (NMD candidate) 3.12177
GPANK1 G patch domain and ankyrin repeats 1 3.12177
TRIM40 tripartite motif containing 40 3.12177
VARS valyl-tRNA synthetase 3.12177
LSM2 LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) 3.12177
PRR3 proline rich 3 3.12177
TRIM10 tripartite motif containing 10 3.12177
MIR1236 microRNA 1236 3.12177
MIR4646 microRNA 4646 3.12177
AIF1 allograft inflammatory factor 1 3.12177
LY6G6D lymphocyte antigen 6 complex, locus G6D 3.12177
SNORD48 small nucleolar RNA, C/D box 48 3.12177
NCR3 natural cytotoxicity triggering receptor 3 3.12177
ATF6B activating transcription factor 6 beta 3.12177
C6ORF136 chromosome 6 open reading frame 136 3.12177
VWA7 von Willebrand factor A domain containing 7 3.12177
SNORA38 small nucleolar RNA, H/ACA box 38 3.12177
STK19 serine/threonine kinase 19 3.12177
TNXB tenascin XB 3.12177
HSPA1L heat shock 70kDa protein 1-like 3.12177
HSPA1A heat shock 70kDa protein 1A 3.12177
HSPA1B heat shock 70kDa protein 1B 3.12177
DHX16 DEAH (Asp-Glu-Ala-His) box polypeptide 16 3.12177
MRPS18B mitochondrial ribosomal protein S18B 3.12177
EHMT2 euchromatic histone-lysine N-methyltransferase 2 3.12177
C6ORF25 chromosome 6 open reading frame 25 3.12177
MIR877 microRNA 877 3.12177
LY6G6E lymphocyte antigen 6 complex, locus G6E (pseudogene) 3.12177
LY6G6C lymphocyte antigen 6 complex, locus G6C 3.12177
TRIM26 tripartite motif containing 26 3.12177
BAG6 BCL2-associated athanogene 6 3.12177
CFB complement factor B 3.12177
CYP21A1P cytochrome P450, family 21, subfamily A, polypeptide 1 pseudogene 3.12177
CLIC1 chloride intracellular channel 1 3.12177
APOM apolipoprotein M 3.12177
ATAT1 alpha tubulin acetyltransferase 1 3.12177
HLA-L major histocompatibility complex, class I, L (pseudogene) 3.12177
TRIM39-RPP21 TRIM39-RPP21 readthrough 2.93899
HCG18 HLA complex group 18 (non-protein coding) 2.93899
RPP21 ribonuclease P/MRP 21kDa subunit 2.93899
TRIM39 tripartite motif containing 39 2.93899
HCG17 HLA complex group 17 (non-protein coding) 2.93899
ZIK1 zinc finger protein interacting with K protein 1 2.76305
ZNF416 zinc finger protein 416 2.76305
FKBP1AP1 FK506 binding protein 1A, 12kDa pseudogene 1 2.76305
ZNF773 zinc finger protein 773 2.76305
ZNF549 zinc finger protein 549 2.76305
ZNF551 zinc finger protein 551 2.76305
ZNF587 zinc finger protein 587 2.76305
ZNF814 zinc finger protein 814 2.76305
ZNF417 zinc finger protein 417 2.76305
ZNF772 zinc finger protein 772 2.76305
ZNF776 zinc finger protein 776 2.76305
VN1R1 vomeronasal 1 receptor 1 2.76305
ZNF586 zinc finger protein 586 2.76305
ZNF587B zinc finger protein 587B 2.76305
ZNF749 zinc finger protein 749 2.76305
ZNF550 zinc finger protein 550 2.76305
ZNF552 zinc finger protein 552 2.76305
ZNF530 zinc finger protein 530 2.76305
ZNF134 zinc finger protein 134 2.76305
ZNF154 zinc finger protein 154 2.76305
ZSCAN4 zinc finger and SCAN domain containing 4 2.76305
ZNF671 zinc finger protein 671 2.76305
ZNF211 zinc finger protein 211 2.76305
C19ORF18 chromosome 19 open reading frame 18 2.64759
SLC27A5 solute carrier family 27 (fatty acid transporter), member 5 2.64759
ZNF8 zinc finger protein 8 2.64759
A1BG-AS1 A1BG antisense RNA 1 2.64759
ZNF256 zinc finger protein 256 2.64759
ZNF132 zinc finger protein 132 2.64759
ZNF418 zinc finger protein 418 2.64759
ZNF584 zinc finger protein 584 2.64759
MIR4754 microRNA 4754 2.64759
ZNF329 zinc finger protein 329 2.64759
LOC646862 2.64759
ZSCAN1 zinc finger and SCAN domain containing 1 2.64759
ZNF497 zinc finger protein 497 2.64759
ZNF446 zinc finger protein 446 2.64759
ZNF274 zinc finger protein 274 2.64759
ZNF606 zinc finger protein 606 2.64759
ZNF324 zinc finger protein 324 2.64759
ZNF324B zinc finger protein 324B 2.64759
ZNF544 zinc finger protein 544 2.64759
ZBTB45 zinc finger and BTB domain containing 45 2.64759
A1BG alpha-1-B glycoprotein 2.64759
LOC100128398 uncharacterized LOC100128398 2.64759
ZNF837 zinc finger protein 837 2.64759
CHMP2A charged multivesicular body protein 2A 2.64759
TRIM28 tripartite motif containing 28 2.64759
RPS5 ribosomal protein S5 2.64759
ZSCAN22 zinc finger and SCAN domain containing 22 2.64759
ZSCAN18 zinc finger and SCAN domain containing 18 2.64759
MICB MHC class I polypeptide-related sequence B 2.15316
HCG26 HLA complex group 26 (non-protein coding) 2.15316
MICA MHC class I polypeptide-related sequence A 2.15316
HLA-B major histocompatibility complex, class I, B 2.15316
HCP5 HLA complex P5 (non-protein coding) 2.15316
ZNF304 zinc finger protein 304 2.12225
ZNF419 zinc finger protein 419 2.12225
AURKC aurora kinase C 2.12225
ZNF805 zinc finger protein 805 2.12225
ZNF460 zinc finger protein 460 2.12225
ZIM3 zinc finger, imprinted 3 2.12225
ZNF548 zinc finger protein 548 2.12225
TRAPPC2P1 2.12225
ZNF543 zinc finger protein 543 2.12225
ZIM2 zinc finger, imprinted 2 2.12225
USP29 ubiquitin specific peptidase 29 2.12225
PEG3 paternally expressed 3 2.12225
ZNF17 zinc finger protein 17 2.12225
ZNF264 zinc finger protein 264 2.12225
MIMT1 MER1 repeat containing imprinted transcript 1 (non-protein coding) 2.12225
DUXA double homeobox A 2.12225
ZNF547 zinc finger protein 547 2.12225
PEG3-AS1 PEG3 antisense RNA 1 2.12225
MZF1 myeloid zinc finger 1 2.11344
LOC100131691 2.11344
UBE2M ubiquitin-conjugating enzyme E2M 2.10992
ZNF135 zinc finger protein 135 2.10992
HLA-DRB1 major histocompatibility complex, class II, DR beta 1 2.06473
HLA-DRB5 major histocompatibility complex, class II, DR beta 5 2.06473
HLA-DRB6 major histocompatibility complex, class II, DR beta 6 (pseudogene) 2.06473
IGHG1 immunoglobulin heavy constant gamma 1 (G1m marker) 2.04842
IGHE immunoglobulin heavy constant epsilon 2.04816
IGHD immunoglobulin heavy constant delta 2.04803
ADAM6 ADAM metallopeptidase domain 6 (pseudogene) 2.04767
KIAA0125 KIAA0125 2.04731
LINC00226 long intergenic non-protein coding RNA 226 2.04712

low copy number

Symbol Name Standardized Value
BTNL3 butyrophilin-like 3 -2.72661