SW48 Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

76 genes with high or low copy number in SW48 relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
PBX1 pre-B-cell leukemia homeobox 1 1.79325
IGSF11 immunoglobulin superfamily, member 11 1.76114
SERP2 stress-associated endoplasmic reticulum protein family member 2 1.713
TSC22D1 TSC22 domain family, member 1 1.71271
SLC25A45 solute carrier family 25, member 45 1.38584
TIGD3 tigger transposable element derived 3 1.3851
DPF2 D4, zinc and double PHD fingers family 2 1.38484
CDC42EP2 CDC42 effector protein (Rho GTPase binding) 2 1.38314
POLA2 polymerase (DNA directed), alpha 2, accessory subunit 1.35435
FRMD8 FERM domain containing 8 1.34895

low copy number

Symbol Name Standardized Value
TP53BP2 tumor protein p53 binding protein 2 -3.21049
ARHGAP23 Rho GTPase activating protein 23 -3.21049
RPL32P3 ribosomal protein L32 pseudogene 3 -2.74009
EFCAB12 EF-hand calcium binding domain 12 -2.74004
VRK2 vaccinia related kinase 2 -2.73353
GCM2 glial cells missing homolog 2 (Drosophila) -2.59387
ACER3 alkaline ceramidase 3 -2.50327
CFHR5 complement factor H-related 5 -2.35144
RIT2 Ras-like without CAAX 2 -2.32798
KCNJ15 potassium channel, inwardly rectifying subfamily J, member 15 -2.2396
TMOD3 tropomodulin 3 (ubiquitous) -2.23416
FAM179B family with sequence similarity 179, member B -2.21384
PDZRN4 PDZ domain containing ring finger 4 -2.21084
NIFK-AS1 NIFK antisense RNA 1 -2.20257
C9 complement component 9 -2.19982
INSL3 insulin-like 3 (Leydig cell) -2.15455
B3GNT3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 -2.15401
LINC00486 long intergenic non-protein coding RNA 486 -2.14195
MIR4789 microRNA 4789 -2.13942
SMYD3 SET and MYND domain containing 3 -2.11826
MARK1 MAP/microtubule affinity-regulating kinase 1 -2.11426
ARRDC1-AS1 ARRDC1 antisense RNA 1 -2.1081
ARRDC1 arrestin domain containing 1 -2.1081
ACTN2 actinin, alpha 2 -2.08242
EREG epiregulin -2.06375
HSP90AB4P heat shock protein 90kDa alpha (cytosolic), class B member 4, pseudogene -2.04522
TSPAN18 tetraspanin 18 -1.94974
PALLD palladin, cytoskeletal associated protein -1.94838
MIR4767 microRNA 4767 -1.93625
FHIT fragile histidine triad -1.93554
FBXO31 F-box protein 31 -1.93371
SEMA6D sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D -1.90245
TTLL11 tubulin tyrosine ligase-like family member 11 -1.88135
EHMT1 euchromatic histone-lysine N-methyltransferase 1 -1.87316
FBXL7 F-box and leucine-rich repeat protein 7 -1.87049
MYOF myoferlin -1.8655
TTC28 tetratricopeptide repeat domain 28 -1.8646
KRT24 keratin 24, type I -1.86161
VAT1L vesicle amine transport 1-like -1.85916
HADH hydroxyacyl-CoA dehydrogenase -1.83813
KRT8 keratin 8, type II -1.81853
LINC00261 long intergenic non-protein coding RNA 261 -1.80855
LINC00299 long intergenic non-protein coding RNA 299 -1.80807
ADAM10 ADAM metallopeptidase domain 10 -1.79885
CTSE cathepsin E -1.76366
BCL2 B-cell CLL/lymphoma 2 -1.73769
CLIC5 chloride intracellular channel 5 -1.73705
VCAN versican -1.73603
LINC00607 long intergenic non-protein coding RNA 607 -1.72666
DAB2IP DAB2 interacting protein -1.72272
SNAR-H small ILF3/NF90-associated RNA H -1.71632
FOXA2 forkhead box A2 -1.71591
TAF4 TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa -1.66878
COL28A1 collagen, type XXVIII, alpha 1 -1.6274
INSM1 insulinoma-associated 1 -1.62118
PCGF5 polycomb group ring finger 5 -1.60769
ADGRV1 adhesion G protein-coupled receptor V1 -1.58925
RALGAPA2 Ral GTPase activating protein, alpha subunit 2 (catalytic) -1.55867
LRFN2 leucine rich repeat and fibronectin type III domain containing 2 -1.55097
MAST4 microtubule associated serine/threonine kinase family member 4 -1.51178
RBM25 RNA binding motif protein 25 -1.49562
CFAP61 cilia and flagella associated protein 61 -1.47856
HDHD1 haloacid dehalogenase-like hydrolase domain containing 1 -1.47145
LRRTM4 leucine rich repeat transmembrane neuronal 4 -1.42782
GALC galactosylceramidase -1.37031
UBE2Q2L ubiquitin-conjugating enzyme E2Q family member 2-like -1.36618