SW480 Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
Similar Terms
Downloads & Tools

Genes

156 genes with high or low copy number in SW480 relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
COG5 component of oligomeric golgi complex 5 2.96774
GPR22 G protein-coupled receptor 22 2.96263
POMC proopiomelanocortin 2.41734
DNAJC27 DnaJ (Hsp40) homolog, subfamily C, member 27 2.33026
EFR3B EFR3 homolog B (S. cerevisiae) 2.33018
DNAJC27-AS1 DNAJC27 antisense RNA 1 2.30263
PSG8 pregnancy specific beta-1-glycoprotein 8 2.26373
CENPO centromere protein O 2.25217
PTRHD1 peptidyl-tRNA hydrolase domain containing 1 2.25217
ADCY3 adenylate cyclase 3 2.25217
ITSN2 intersectin 2 2.21354
NCOA1 nuclear receptor coactivator 1 2.12706
PIR pirin (iron-binding nuclear protein) 2.09602
PIR-FIGF PIR-FIGF readthrough 2.09602
LOC100289650 uncharacterized LOC100289650 2.04013
PSG10P pregnancy specific beta-1-glycoprotein 10, pseudogene 2.02981
TSPAN7 tetraspanin 7 2.00452
BCAP29 B-cell receptor-associated protein 29 1.98393
DUS4L dihydrouridine synthase 4-like (S. cerevisiae) 1.98368
SLC26A4-AS1 SLC26A4 antisense RNA 1 1.9836
SLC26A4 solute carrier family 26 (anion exchanger), member 4 1.98281
OR4F17 olfactory receptor, family 4, subfamily F, member 17 1.97477
FAM153A family with sequence similarity 153, member A 1.88794
GLIDR glioblastoma down-regulated RNA 1.86637
TYW1 tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) 1.75534
LINC01002 long intergenic non-protein coding RNA 1002 1.75422
ARHGEF35 Rho guanine nucleotide exchange factor (GEF) 35 1.66249
LINC00971 long intergenic non-protein coding RNA 971 1.64932
SDK1 sidekick cell adhesion molecule 1 1.62737
KGFLP2 keratinocyte growth factor-like protein 2 1.58384
EGF epidermal growth factor 1.53137
GAR1 GAR1 ribonucleoprotein 1.53115
RRH retinal pigment epithelium-derived rhodopsin homolog 1.53114
LRIT3 leucine-rich repeat, immunoglobulin-like and transmembrane domains 3 1.53114
TMEM38B transmembrane protein 38B 1.51492
PCDH20 protocadherin 20 1.51012
FKTN fukutin 1.50346
DIAPH3-AS1 DIAPH3 antisense RNA 1 1.49744
DIAPH3-AS2 DIAPH3 antisense RNA 2 1.49734
DIAPH3 diaphanous-related formin 3 1.49711
TDRD3 tudor domain containing 3 1.49238
MIR3169 microRNA 3169 1.49207
TAL2 T-cell acute lymphocytic leukemia 2 1.49153
ZNF14 zinc finger protein 14 1.49003
FGL2 fibrinogen-like 2 1.46627
FSD1L fibronectin type III and SPRY domain containing 1-like 1.46
CCDC146 coiled-coil domain containing 146 1.45365
GSAP gamma-secretase activating protein 1.44634
APTR Alu-mediated CDKN1A/p21 transcriptional regulator (non-protein coding) 1.42542
PTPN12 protein tyrosine phosphatase, non-receptor type 12 1.42376
RSBN1L round spermatid basic protein 1-like 1.42322
DHRS3 dehydrogenase/reductase (SDR family) member 3 1.418
RPL13AP17 ribosomal protein L13a pseudogene 17 1.41184
TMEM60 transmembrane protein 60 1.40439
PHTF2 putative homeodomain transcription factor 2 1.40439
VPS13D vacuolar protein sorting 13 homolog D (S. cerevisiae) 1.37626
MRGPRX1 MAS-related GPR, member X1 1.37183
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 1.36636
THSD7B thrombospondin, type I, domain containing 7B 1.36253
PCAT1 prostate cancer associated transcript 1 (non-protein coding) 1.36173
HGF hepatocyte growth factor (hepapoietin A; scatter factor) 1.36083
RNY4 RNA, Ro-associated Y4 1.34255
GNAT3 guanine nucleotide binding protein, alpha transducing 3 1.34181
UPK3BL uroplakin 3B-like 1.34108
POLR2J2 polymerase (RNA) II (DNA directed) polypeptide J2 1.33916

low copy number

Symbol Name Standardized Value
NCALD neurocalcin delta -3.00133
MUS81 MUS81 structure-specific endonuclease subunit -2.7697
KCTD1 potassium channel tetramerization domain containing 1 -2.59447
STS steroid sulfatase (microsomal), isozyme S -2.59447
RAPGEF2 Rap guanine nucleotide exchange factor (GEF) 2 -2.59447
LRRC20 leucine rich repeat containing 20 -2.50618
CFL1 cofilin 1 (non-muscle) -2.49971
GRID2 glutamate receptor, ionotropic, delta 2 -2.4937
ANGPT1 angiopoietin 1 -2.45932
MIR4767 microRNA 4767 -2.3514
COQ3 coenzyme Q3 methyltransferase -2.27415
PNISR PNN-interacting serine/arginine-rich protein -2.27383
CLSTN2 calsyntenin 2 -2.20312
RXRG retinoid X receptor, gamma -2.20307
BCKDHB branched chain keto acid dehydrogenase E1, beta polypeptide -2.16858
USP45 ubiquitin specific peptidase 45 -2.14894
COL24A1 collagen, type XXIV, alpha 1 -2.10457
CHRAC1 chromatin accessibility complex 1 -2.06251
FAXC failed axon connections homolog (Drosophila) -2.05122
GSE1 Gse1 coiled-coil protein -2.04793
LOC100287036 uncharacterized LOC100287036 -2.02874
RMST rhabdomyosarcoma 2 associated transcript (non-protein coding) -2.02185
TENM2 teneurin transmembrane protein 2 -2.01605
CR1 complement component (3b/4b) receptor 1 (Knops blood group) -2.01362
MIPOL1 mirror-image polydactyly 1 -2.00885
MIR744 microRNA 744 -2.00424
SNAR-A13 small ILF3/NF90-associated RNA A13 -2.00401
SNAR-A2 small ILF3/NF90-associated RNA A2 -2.00401
SNAR-A12 small ILF3/NF90-associated RNA A12 -2.00401
SNAR-C2 small ILF3/NF90-associated RNA C2 -2.00401
SNAR-C5 small ILF3/NF90-associated RNA C5 -2.00401
SNAR-C1 small ILF3/NF90-associated RNA C1 -2.00401
SNAR-A1 small ILF3/NF90-associated RNA A1 -2.00401
CASC8 cancer susceptibility candidate 8 (non-protein coding) -1.98093
AGO2 argonaute RISC catalytic component 2 -1.97345
PTK2 protein tyrosine kinase 2 -1.95926
MACROD2 MACRO domain containing 2 -1.9482
CELF4 CUGBP, Elav-like family member 4 -1.91151
PDE8B phosphodiesterase 8B -1.86574
ZNF678 zinc finger protein 678 -1.84592
NME7 NME/NM23 family member 7 -1.84427
TAF1B TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa -1.84296
MIR570 microRNA 570 -1.83196
TMEM178B transmembrane protein 178B -1.75557
IFT22 intraflagellar transport 22 -1.75223
POU5F2 POU domain class 5, transcription factor 2 -1.7272
MAP2K4 mitogen-activated protein kinase kinase 4 -1.72642
SAMD12 sterile alpha motif domain containing 12 -1.7172
HDHD1 haloacid dehalogenase-like hydrolase domain containing 1 -1.71347
C20ORF196 chromosome 20 open reading frame 196 -1.69951
CD200 CD200 molecule -1.69475
APOD apolipoprotein D -1.67461
PASD1 PAS domain containing 1 -1.65914
TXNRD1 thioredoxin reductase 1 -1.65367
EID3 EP300 interacting inhibitor of differentiation 3 -1.6536
C8ORF37-AS1 C8orf37 antisense RNA 1 -1.64257
RP1L1 retinitis pigmentosa 1-like 1 -1.621
OR4C11 olfactory receptor, family 4, subfamily C, member 11 -1.58948
MACROD2-AS1 MACROD2 antisense RNA 1 -1.58795
LINC00700 long intergenic non-protein coding RNA 700 -1.55379
LINC00152 long intergenic non-protein coding RNA 152 -1.53346
PFKP phosphofructokinase, platelet -1.53304
ADARB2-AS1 ADARB2 antisense RNA 1 -1.52732
LINC00200 long intergenic non-protein coding RNA 200 -1.52727
IDI1 isopentenyl-diphosphate delta isomerase 1 -1.52679
IDI2-AS1 IDI2 antisense RNA 1 -1.52675
IDI2 isopentenyl-diphosphate delta isomerase 2 -1.52661
GTPBP4 GTP binding protein 4 -1.52661
LARP4B La ribonucleoprotein domain family, member 4B -1.52642
FAM172A family with sequence similarity 172, member A -1.51271
KIAA0825 KIAA0825 -1.47945
COL26A1 collagen, type XXVI, alpha 1 -1.46713
LOC642846 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like -1.46174
CDCA7L cell division cycle associated 7-like -1.44546
SS18 synovial sarcoma translocation, chromosome 18 -1.44414
PSMA8 proteasome (prosome, macropain) subunit, alpha type, 8 -1.44401
LIPH lipase, member H -1.43335
WDR37 WD repeat domain 37 -1.42899
PRKCA protein kinase C, alpha -1.40934
TRAPPC9 trafficking protein particle complex 9 -1.39526
TAF4B TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa -1.38495
DOCK1 dedicator of cytokinesis 1 -1.36826
AQP4 aquaporin 4 -1.36457
PCAT18 prostate cancer associated transcript 18 (non-protein coding) -1.36134
CCSER1 coiled-coil serine-rich protein 1 -1.35442
LINC00701 long intergenic non-protein coding RNA 701 -1.34937
LOC390705 protein phosphatase 2, regulatory subunit B'', beta pseudogene -1.34799
SMAD4 SMAD family member 4 -1.34683
LARGE like-glycosyltransferase -1.33966
AQP4-AS1 AQP4 antisense RNA 1 -1.32929
ZNF521 zinc finger protein 521 -1.32295