SW579 Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: squamous cell carcinoma (Cell Line Ontology, CLO_0009220)
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Genes

713 genes with high or low copy number in SW579 relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
HDX highly divergent homeobox 3.2803
PDZRN4 PDZ domain containing ring finger 4 3.2803
RPS6KA6 ribosomal protein S6 kinase, 90kDa, polypeptide 6 3.2803
CYLC1 cylicin, basic protein of sperm head cytoskeleton 1 3.2803
POU3F4 POU class 3 homeobox 4 3.2803
ZKSCAN7 zinc finger with KRAB and SCAN domains 7 3.2803
CDA cytidine deaminase 3.27208
ZFAND2A zinc finger, AN1-type domain 2A 2.83149
UNCX UNC homeobox 2.83142
DNASE2 deoxyribonuclease II, lysosomal 2.80252
RTBDN retbindin 2.80076
MAST1 microtubule associated serine/threonine kinase 1 2.80033
GADD45GIP1 growth arrest and DNA-damage-inducible, gamma interacting protein 1 2.79108
RAD23A RAD23 homolog A (S. cerevisiae) 2.79108
DAND5 DAN domain family member 5, BMP antagonist 2.79085
KLF1 Kruppel-like factor 1 (erythroid) 2.7907
SYCE2 synaptonemal complex central element protein 2 2.7907
GCDH glutaryl-CoA dehydrogenase 2.7907
FARSA phenylalanyl-tRNA synthetase, alpha subunit 2.79063
CALR calreticulin 2.79009
ZNF490 zinc finger protein 490 2.78478
MAGOHB mago-nashi homolog B (Drosophila) 2.76744
KLRC1 killer cell lectin-like receptor subfamily C, member 1 2.76742
TAS2R50 taste receptor, type 2, member 50 2.76739
TAS2R20 taste receptor, type 2, member 20 2.76739
PRH1 proline-rich protein HaeIII subfamily 1 2.76738
TAS2R13 taste receptor, type 2, member 13 2.76738
PRR4 proline rich 4 (lacrimal) 2.76738
TAS2R9 taste receptor, type 2, member 9 2.76736
TAS2R7 taste receptor, type 2, member 7 2.76736
TAS2R10 taste receptor, type 2, member 10 2.76736
TAS2R8 taste receptor, type 2, member 8 2.76736
KLRAP1 killer cell lectin-like receptor subfamily A pseudogene 1 2.76735
TAS2R14 taste receptor, type 2, member 14 2.76731
PRH2 proline-rich protein HaeIII subfamily 2 2.76731
YBX3 Y box binding protein 3 2.76731
TAS2R19 taste receptor, type 2, member 19 2.76698
STYK1 serine/threonine/tyrosine kinase 1 2.76689
CD69 CD69 molecule 2.75445
CLEC1B C-type lectin domain family 1, member B 2.75445
CLEC9A C-type lectin domain family 9, member A 2.75444
CLEC2A C-type lectin domain family 2, member A 2.75444
CLEC2B C-type lectin domain family 2, member B 2.75444
CLEC7A C-type lectin domain family 7, member A 2.75444
CLEC12A C-type lectin domain family 12, member A 2.75444
KLRF1 killer cell lectin-like receptor subfamily F, member 1 2.75444
CLEC1A C-type lectin domain family 1, member A 2.75444
KLRF2 killer cell lectin-like receptor subfamily F, member 2 2.75444
CLEC12B C-type lectin domain family 12, member B 2.75444
CLEC2D C-type lectin domain family 2, member D 2.75443
KLRD1 killer cell lectin-like receptor subfamily D, member 1 2.75443
CLECL1 C-type lectin-like 1 2.75443
GABARAPL1 GABA(A) receptor-associated protein like 1 2.75442
OLR1 oxidized low density lipoprotein (lectin-like) receptor 1 2.75442
KLRC4 killer cell lectin-like receptor subfamily C, member 4 2.75438
LOC374443 C-type lectin domain family 2, member D pseudogene 2.75403
KLRB1 killer cell lectin-like receptor subfamily B, member 1 2.75402
MMD2 monocyte to macrophage differentiation-associated 2 2.7352
OCM oncomodulin 2.73491
CCZ1 CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae) 2.73118
GET4 golgi to ER traffic protein 4 homolog (S. cerevisiae) 2.70096
FLJ44511 uncharacterized LOC441307 2.70088
PDGFA platelet-derived growth factor alpha polypeptide 2.70088
MIR339 microRNA 339 2.70083
WI2-2373I1.2 forkhead box L1-like 2.70068
LOC442497 uncharacterized LOC442497 2.70068
ADAP1 ArfGAP with dual PH domains 1 2.70057
SUN1 Sad1 and UNC84 domain containing 1 2.70036
PRKAR1B protein kinase, cAMP-dependent, regulatory, type I, beta 2.70032
DNAAF5 dynein, axonemal, assembly factor 5 2.7
FAM20C family with sequence similarity 20, member C 2.69997
CYP2W1 cytochrome P450, family 2, subfamily W, polypeptide 1 2.69107
COX19 COX19 cytochrome c oxidase assembly factor 2.69027
NDUFA4 NDUFA4, mitochondrial complex associated 2.67564
RNF216P1 ring finger protein 216 pseudogene 1 2.66682
ACTB actin, beta 2.66661
RBAKDN RBAK downstream neighbor (non-protein coding) 2.66658
RBAK RB-associated KRAB zinc finger 2.66655
RBAK-RBAKDN RBAK-RBAKDN readthrough 2.66655
RNF216-IT1 RNF216 intronic transcript 1 2.66651
SLC29A4 solute carrier family 29 (equilibrative nucleoside transporter), member 4 2.66647
FSCN1 fascin actin-bundling protein 1 2.66644
MIR589 microRNA 589 2.66643
FBXL18 F-box and leucine-rich repeat protein 18 2.66643
TNRC18 trinucleotide repeat containing 18 2.66643
ZNF815P zinc finger protein 815, pseudogene 2.66627
RNF216 ring finger protein 216 2.66589
PHF14 PHD finger protein 14 2.57312
KLRK1 killer cell lectin-like receptor subfamily K, member 1 2.53498
KLRC4-KLRK1 KLRC4-KLRK1 readthrough 2.53447
ISPD-AS1 ISPD antisense RNA 1 2.49887
ZNF791 zinc finger protein 791 2.48809
SNORD41 small nucleolar RNA, C/D box 41 2.48802
FBXW9 F-box and WD repeat domain containing 9 2.48771
DHPS deoxyhypusine synthase 2.48756
MAN2B1 mannosidase, alpha, class 2B, member 1 2.48756
WDR83OS WD repeat domain 83 opposite strand 2.48756
WDR83 WD repeat domain 83 2.48756
TNPO2 transportin 2 2.48722
C19ORF43 chromosome 19 open reading frame 43 2.48716
ASNA1 arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) 2.48716
ZNF799 zinc finger protein 799 2.48615
ZNF709 zinc finger protein 709 2.48601
ZNF564 zinc finger protein 564 2.48586
ZNF443 zinc finger protein 443 2.48577
JUNB jun B proto-oncogene 2.46649
BEST2 bestrophin 2 2.46601
HOOK2 hook microtubule-tethering protein 2 2.46601
RNASEH2A ribonuclease H2, subunit A 2.46592
PRDX2 peroxiredoxin 2 2.46592
TMEM52B transmembrane protein 52B 2.46158
RADIL Ras association and DIL domains 2.44527
PAPOLB poly(A) polymerase beta (testis specific) 2.44527
TMEM106B transmembrane protein 106B 2.44115
ARL4A ADP-ribosylation factor-like 4A 2.44107
SCIN scinderin 2.4408
AGR2 anterior gradient 2 2.43125
TSPAN13 tetraspanin 13 2.43079
GPR146 G protein-coupled receptor 146 2.41117
GPER1 G protein-coupled estrogen receptor 1 2.41106
C7ORF50 chromosome 7 open reading frame 50 2.40274
BZW2 basic leucine zipper and W2 domains 2 2.40017
IER2 immediate early response 2 2.39829
STX10 syntaxin 10 2.39829
NACC1 nucleus accumbens associated 1, BEN and BTB (POZ) domain containing 2.39809
TRMT1 tRNA methyltransferase 1 homolog (S. cerevisiae) 2.39809
LYL1 lymphoblastic leukemia associated hematopoiesis regulator 1 2.39809
CACNA1A calcium channel, voltage-dependent, P/Q type, alpha 1A subunit 2.39774
NFIX nuclear factor I/X (CCAAT-binding transcription factor) 2.39621
THSD7A thrombospondin, type I, domain containing 7A 2.38898
WIPI2 WD repeat domain, phosphoinositide interacting 2 2.38718
STARD8 StAR-related lipid transfer (START) domain containing 8 2.36415
EFNB1 ephrin-B1 2.36415
YIPF6 Yip1 domain family, member 6 2.36415
MEOX2 mesenchyme homeobox 2 2.36156
PER4 period circadian clock 3 pseudogene 2.35734
ANKMY2 ankyrin repeat and MYND domain containing 2 2.34809
SOSTDC1 sclerostin domain containing 1 2.34809
ZNF442 zinc finger protein 442 2.30668
ZNF625 zinc finger protein 625 2.30666
ZNF563 zinc finger protein 563 2.30661
ZNF433 zinc finger protein 433 2.30659
ZNF44 zinc finger protein 44 2.30657
ZNF763 zinc finger protein 763 2.30657
ZNF20 zinc finger protein 20 2.30653
ZNF788 zinc finger family member 788 2.30653
ZNF136 zinc finger protein 136 2.3064
ZNF625-ZNF20 ZNF625-ZNF20 readthrough (NMD candidate) 2.30629
RNMTL1 RNA methyltransferase like 1 2.30608
GEMIN4 gem (nuclear organelle) associated protein 4 2.30608
DBIL5P diazepam binding inhibitor-like 5, pseudogene 2.30608
FAM57A family with sequence similarity 57, member A 2.30608
ZNF878 zinc finger protein 878 2.30603
ZNF700 zinc finger protein 700 2.30601
ZNF844 zinc finger protein 844 2.30597
DOCK10 dedicator of cytokinesis 10 2.27905
AGR3 anterior gradient 3 2.25907
ICA1 islet cell autoantigen 1, 69kDa 2.25211
LRRC72 leucine rich repeat containing 72 2.24044
HOPX HOP homeobox 2.23985
SRP72 signal recognition particle 72kDa 2.23947
ARL9 ADP-ribosylation factor-like 9 2.23913
KIAA1211 KIAA1211 2.23895
PAICS phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase 2.23888
AASDH aminoadipate-semialdehyde dehydrogenase 2.23888
PPAT phosphoribosyl pyrophosphate amidotransferase 2.23876
KLRC3 killer cell lectin-like receptor subfamily C, member 3 2.23048
RPL36A ribosomal protein L36a 2.22734
BTK Bruton agammaglobulinemia tyrosine kinase 2.22734
RPL36A-HNRNPH2 RPL36A-HNRNPH2 readthrough 2.22734
AHR aryl hydrocarbon receptor 2.22194
ZDHHC4 zinc finger, DHHC-type containing 4 2.17761
C7ORF26 chromosome 7 open reading frame 26 2.17672
ZNF853 zinc finger protein 853 2.17672
ZNF12 zinc finger protein 12 2.1762
GRID2IP glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 2.1746
FAM220A family with sequence similarity 220, member A 2.17452
KDELR2 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 2.17398
RAC1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) 2.17398
DAGLB diacylglycerol lipase, beta 2.17298
CYTH3 cytohesin 3 2.17245
ZNF439 zinc finger protein 439 2.16829
ZNF69 zinc finger protein 69 2.16827
PMS2CL PMS2 C-terminal like pseudogene 2.16774
EXOC1 exocyst complex component 1 2.16588
MIOS missing oocyte, meiosis regulator, homolog (Drosophila) 2.14589
RPA3 replication protein A3, 14kDa 2.14578
UMAD1 UBAP1-MVB12-associated (UMA) domain containing 1 2.14437
VWDE von Willebrand factor D and EGF domains 2.14377
GLCCI1 glucocorticoid induced 1 2.14253
THEGL theg spermatid protein-like 2.11701
IGFBP7-AS1 IGFBP7 antisense RNA 1 2.10696
CPAMD8 C3 and PZP-like, alpha-2-macroglobulin domain containing 8 2.1064
DGKB diacylglycerol kinase, beta 90kDa 2.09986
CHM choroideremia (Rab escort protein 1) 2.09974
RAB9B RAB9B, member RAS oncogene family 2.09602
OPHN1 oligophrenin 1 2.09602
NXF4 nuclear RNA export factor 4 pseudogene 2.09559
ARMCX5 armadillo repeat containing, X-linked 5 2.09559
BHLHB9 basic helix-loop-helix domain containing, class B, 9 2.09559
ARMCX5-GPRASP2 ARMCX5-GPRASP2 readthrough 2.09559
TMSB15A thymosin beta 15a 2.09559
GPRASP1 G protein-coupled receptor associated sorting protein 1 2.09559
GPRASP2 G protein-coupled receptor associated sorting protein 2 2.09559
PLP1 proteolipid protein 1 2.09555
R3HDM1 R3H domain containing 1 2.09466
ISPD isoprenoid synthase domain containing 2.08974
CEP135 centrosomal protein 135kDa 2.07736
SRD5A3-AS1 SRD5A3 antisense RNA 1 2.07555
TMEM165 transmembrane protein 165 2.07498
CLOCK clock circadian regulator 2.0748
AIMP2 aminoacyl tRNA synthetase complex-interacting multifunctional protein 2 2.07429
EIF2AK1 eukaryotic translation initiation factor 2-alpha kinase 1 2.07396
USP42 ubiquitin specific peptidase 42 2.07334
ZNF890P zinc finger protein 890, pseudogene 2.07109
LOC644145 exocyst complex component 1 pseudogene 2.06757
ZNF653 zinc finger protein 653 2.06649
ACP5 acid phosphatase 5, tartrate resistant 2.06649
ZNF627 zinc finger protein 627 2.06636
ECSIT ECSIT signalling integrator 2.06628
CNN1 calponin 1, basic, smooth muscle 2.06628
ELAVL3 ELAV like neuron-specific RNA binding protein 3 2.06628
ELOF1 elongation factor 1 homolog (S. cerevisiae) 2.06628
CCDC151 coiled-coil domain containing 151 2.06628
PRKCSH protein kinase C substrate 80K-H 2.06628
TSPAN16 tetraspanin 16 2.06626
C19ORF80 chromosome 19 open reading frame 80 2.06624
TMEM205 transmembrane protein 205 2.06624
LPPR2 lipid phosphate phosphatase-related protein type 2 2.06624
RGL3 ral guanine nucleotide dissociation stimulator-like 3 2.06624
CCDC159 coiled-coil domain containing 159 2.06624
RAB3D RAB3D, member RAS oncogene family 2.06624
SWSAP1 SWIM-type zinc finger 7 associated protein 1 2.06623
EPOR erythropoietin receptor 2.06623
ZNF823 zinc finger protein 823 2.0662
DOCK6 dedicator of cytokinesis 6 2.06618
KANK2 KN motif and ankyrin repeat domains 2 2.06618
ZNF491 zinc finger protein 491 2.06616
ZNF440 zinc finger protein 440 2.06615
ZNF441 zinc finger protein 441 2.06615
ZNF833P zinc finger protein 833, pseudogene 2.06402
C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 2.04743
NXPH1 neurexophilin 1 2.04456
PMS2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) 2.02398
RASL11B RAS-like, family 11, member B 2.01375
LOC152578 uncharacterized LOC152578 2.01359
NMU neuromedin U 2.0131
PDCL2 phosducin-like 2 2.0131
LINC00971 long intergenic non-protein coding RNA 971 2.00887
CDH13 cadherin 13 2.0085
ESX1 ESX homeobox 1 2.00703
FAM199X family with sequence similarity 199, X-linked 2.00703
LOC286437 uncharacterized LOC286437 2.00703
ZCCHC18 zinc finger, CCHC domain containing 18 2.00703
RAB40AL RAB40A, member RAS oncogene family-like 2.00671
LINC00630 long intergenic non-protein coding RNA 630 2.0067
BEX1 brain expressed, X-linked 1 2.00666
NXF3 nuclear RNA export factor 3 2.00665
SRD5A3 steroid 5 alpha-reductase 3 1.99127
KDR kinase insert domain receptor 1.99121
LOC100131257 zinc finger protein 655 pseudogene 1.97314
COL28A1 collagen, type XXVIII, alpha 1 1.96825
FAM32A family with sequence similarity 32, member A 1.96691
CIB3 calcium and integrin binding family member 3 1.96675
HSH2D hematopoietic SH2 domain containing 1.96101
ERVMER34-1 endogenous retrovirus group MER34, member 1 1.95474
MIR4449 microRNA 4449 1.95467
DANCR differentiation antagonizing non-protein coding RNA 1.95467
SNORA26 small nucleolar RNA, H/ACA box 26 1.95467
LRRC66 leucine rich repeat containing 66 1.95381
SGCB sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) 1.95372
RAB8A RAB8A, member RAS oncogene family 1.95272
OR10H5 olfactory receptor, family 10, subfamily H, member 5 1.94307
OR10H1 olfactory receptor, family 10, subfamily H, member 1 1.94271
KLF2 Kruppel-like factor 2 1.93919
UCA1 urothelial cancer associated 1 (non-protein coding) 1.93913
AP1M1 adaptor-related protein complex 1, mu 1 subunit 1.9382
TMEM31 transmembrane protein 31 1.9348
GLRA4 glycine receptor, alpha 4 1.93479
PARG poly (ADP-ribose) glycohydrolase 1.92921
PARGP1 poly (ADP-ribose) glycohydrolase pseudogene 1 1.92856
KLRC2 killer cell lectin-like receptor subfamily C, member 2 1.92705
CYP4F24P cytochrome P450, family 4, subfamily F, polypeptide 24, pseudogene 1.89195
DCUN1D4 DCN1, defective in cullin neddylation 1, domain containing 4 1.89062
USP46 ubiquitin specific peptidase 46 1.88978
SPATA18 spermatogenesis associated 18 1.88881
GRIP1 glutamate receptor interacting protein 1 1.88635
GRIA3 glutamate receptor, ionotropic, AMPA 3 1.88014
UBE2DNL ubiquitin-conjugating enzyme E2D N-terminal like (pseudogene) 1.87466
POF1B premature ovarian failure, 1B 1.87464
ZNF711 zinc finger protein 711 1.87463
EPS15L1 epidermal growth factor receptor pathway substrate 15-like 1 1.8746
FOXR2 forkhead box R2 1.87329
SLC25A53 solute carrier family 25, member 53 1.87309
RRAGB Ras-related GTP binding B 1.87232
FIP1L1 factor interacting with PAPOLA and CPSF1 1.87059
VPS53 vacuolar protein sorting 53 homolog (S. cerevisiae) 1.86851
LINC00661 long intergenic non-protein coding RNA 661 1.86844
OR10H4 olfactory receptor, family 10, subfamily H, member 4 1.86823
ZXDB zinc finger, X-linked, duplicated B 1.86709
RNU6-35P RNA, U6 small nuclear 35, pseudogene 1.86541
CYP4F11 cytochrome P450, family 4, subfamily F, polypeptide 11 1.85266
TPM4 tropomyosin 4 1.84369
NDUFB7 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa 1.84278
MIR639 microRNA 639 1.84275
DNAJB1 DnaJ (Hsp40) homolog, subfamily B, member 1 1.84257
TECR trans-2,3-enoyl-CoA reductase 1.84246
CLEC17A C-type lectin domain family 17, member A 1.84245
OR10H3 olfactory receptor, family 10, subfamily H, member 3 1.83639
SCFD2 sec1 family domain containing 2 1.83408
CYP4F2 cytochrome P450, family 4, subfamily F, polypeptide 2 1.83005
OR10H2 olfactory receptor, family 10, subfamily H, member 2 1.8245
REST RE1-silencing transcription factor 1.82163
DACH2 dachshund family transcription factor 2 1.8215
TCEAL3 transcription elongation factor A (SII)-like 3 1.81965
TCEAL4 transcription elongation factor A (SII)-like 4 1.81965
TCEAL1 transcription elongation factor A (SII)-like 1 1.81965
MORF4L2-AS1 MORF4L2 antisense RNA 1 1.81963
MORF4L2 mortality factor 4 like 2 1.81963
BEX4 brain expressed, X-linked 4 1.81963
LINC00905 long intergenic non-protein coding RNA 905 1.81811
LNX1-AS1 LNX1 antisense RNA 1 1.81788
KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 1.81622
CYP4F3 cytochrome P450, family 4, subfamily F, polypeptide 3 1.81528
ZXDA zinc finger, X-linked, duplicated A 1.81508
POLR2B polymerase (RNA) II (DNA directed) polypeptide B, 140kDa 1.81043
NOA1 nitric oxide associated 1 1.81043
IGFBP7 insulin-like growth factor binding protein 7 1.81043
SPINK2 serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor) 1.80662
GIPC1 GIPC PDZ domain containing family, member 1 1.80483
PTGER1 prostaglandin E receptor 1 (subtype EP1), 42kDa 1.80479
USP51 ubiquitin specific peptidase 51 1.80421
LOC113230 uncharacterized protein LOC113230 1.79925
PRKACA protein kinase, cAMP-dependent, catalytic, alpha 1.79925
SAMD1 sterile alpha motif domain containing 1 1.79925
MIR4536-1 microRNA 4536-1 1.79664
MAGEH1 melanoma antigen family H1 1.79664
ENOX2 ecto-NOX disulfide-thiol exchanger 2 1.79344
OR7C1 olfactory receptor, family 7, subfamily C, member 1 1.79208
ZNF333 zinc finger protein 333 1.79187
STAG2 stromal antigen 2 1.79167
XIAP X-linked inhibitor of apoptosis, E3 ubiquitin protein ligase 1.79151
CYP4F8 cytochrome P450, family 4, subfamily F, polypeptide 8 1.78283
OR7A17 olfactory receptor, family 7, subfamily A, member 17 1.7825
RASAL3 RAS protein activator like 3 1.78194
RLN3 relaxin 3 1.77981
RPL21P44 ribosomal protein L21 pseudogene 44 1.77707
CHIC2 cysteine-rich hydrophobic domain 2 1.77705
GSX2 GS homeobox 2 1.77703
APOOL apolipoprotein O-like 1.77616
SATL1 spermidine/spermine N1-acetyl transferase-like 1 1.77612
UQCRBP1 ubiquinol-cytochrome c reductase binding protein pseudogene 1 1.77363
ASF1B anti-silencing function 1B histone chaperone 1.76491
ADGRL1 adhesion G protein-coupled receptor L1 1.76196
LOC100507373 uncharacterized LOC100507373 1.76191
PKN1 protein kinase N1 1.75774
ZNF71 zinc finger protein 71 1.75454
PALM3 paralemmin 3 1.75342
IL27RA interleukin 27 receptor, alpha 1.75336
FAM104B family with sequence similarity 104, member B 1.7514
PAGE5 P antigen family, member 5 (prostate associated) 1.75122
MTRNR2L10 MT-RNR2-like 10 1.75122
PAGE3 P antigen family, member 3 (prostate associated) 1.75091
SLC25A14 solute carrier family 25 (mitochondrial carrier, brain), member 14 1.74805
RBMX2 RNA binding motif protein, X-linked 2 1.74805
ZNF280C zinc finger protein 280C 1.74805
GPR119 G protein-coupled receptor 119 1.74805
RAB33A RAB33A, member RAS oncogene family 1.74805
OR7A10 olfactory receptor, family 7, subfamily A, member 10 1.74682
OR7A5 olfactory receptor, family 7, subfamily A, member 5 1.74682
ADGRE2 adhesion G protein-coupled receptor E2 1.74662
THOC2 THO complex 2 1.74628
CYP4F22 cytochrome P450, family 4, subfamily F, polypeptide 22 1.73833
PGLYRP2 peptidoglycan recognition protein 2 1.73813
MIR1470 microRNA 1470 1.7376
WIZ widely interspaced zinc finger motifs 1.7376
AKAP8L A kinase (PRKA) anchor protein 8-like 1.73735
AKAP8 A kinase (PRKA) anchor protein 8 1.73725
PDGFRA platelet-derived growth factor receptor, alpha polypeptide 1.73131
LNX1-AS2 LNX1 antisense RNA 2 1.72986
LNX1 ligand of numb-protein X 1, E3 ubiquitin protein ligase 1.72983
NGFRAP1 nerve growth factor receptor (TNFRSF16) associated protein 1 1.72821
BEX2 brain expressed X-linked 2 1.72821
WBP5 WW domain binding protein 5 1.72821
TCEAL7 transcription elongation factor A (SII)-like 7 1.72821
TCEAL5 transcription elongation factor A (SII)-like 5 1.72821
TCEAL8 transcription elongation factor A (SII)-like 8 1.7282
FAAH2 fatty acid amide hydrolase 2 1.72722
EPHX3 epoxide hydrolase 3 1.72681
BRD4 bromodomain containing 4 1.72667
TSR2 TSR2, 20S rRNA accumulation, homolog (S. cerevisiae) 1.72236
FGD1 FYVE, RhoGEF and PH domain containing 1 1.72236
ITIH6 inter-alpha-trypsin inhibitor heavy chain family, member 6 1.72236
ADGRE5 adhesion G protein-coupled receptor E5 1.71504
PGK1 phosphoglycerate kinase 1 1.71476
UBQLN2 ubiquilin 2 1.71115
TRO trophinin 1.70947
MAGED2 melanoma antigen family D2 1.70941
PFKFB1 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 1.70941
SNORA11 small nucleolar RNA, H/ACA box 11 1.70941
PAGE2B P antigen family, member 2B 1.70929
OCRL oculocerebrorenal syndrome of Lowe 1.70629
APLN apelin 1.70627
SASH3 SAM and SH3 domain containing 3 1.70627
BCORL1 BCL6 corepressor-like 1 1.70627
ELF4 E74-like factor 4 (ets domain transcription factor) 1.70627
AIFM1 apoptosis-inducing factor, mitochondrion-associated, 1 1.70627
SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 1.70625
SH2D1A SH2 domain containing 1A 1.70449
DCAF15 DDB1 and CUL4 associated factor 15 1.7041
RFX1 regulatory factor X, 1 (influences HLA class II expression) 1.7041
KLF8 Kruppel-like factor 8 1.69614
CCL4L1 chemokine (C-C motif) ligand 4-like 1 1.69317
CCL4L2 chemokine (C-C motif) ligand 4-like 2 1.69317
ETV1 ets variant 1 1.6886
CCL3L1 chemokine (C-C motif) ligand 3-like 1 1.6886
CCL3L3 chemokine (C-C motif) ligand 3-like 3 1.6886
RAB40A RAB40A, member RAS oncogene family 1.68824
PODNL1 podocan-like 1 1.68747
GNL3L guanine nucleotide binding protein-like 3 (nucleolar)-like 1.68298
CPT1B carnitine palmitoyltransferase 1B (muscle) 1.67884
CHKB-CPT1B CHKB-CPT1B readthrough (NMD candidate) 1.67884
NOTCH3 notch 3 1.67257
APEX2 APEX nuclease (apurinic/apyrimidinic endonuclease) 2 1.6713
ALAS2 5'-aminolevulinate synthase 2 1.6713
XPNPEP2 X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound 1.66847
ZDHHC9 zinc finger, DHHC-type containing 9 1.66845
UTP14A UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast) 1.66844
SCO2 SCO2 cytochrome c oxidase assembly protein 1.66217
CC2D1A coiled-coil and C2 domain containing 1A 1.66119
TYMP thymidine phosphorylase 1.65316
OR7C2 olfactory receptor, family 7, subfamily C, member 2 1.65253
PAGE2 P antigen family, member 2 (prostate associated) 1.65245
CHKB-AS1 CHKB antisense RNA 1 (head to head) 1.65069
SPIN3 spindlin family, member 3 1.65035
SLC1A6 solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6 1.6498
CCDC105 coiled-coil domain containing 105 1.64972
PGAM4 phosphoglycerate mutase family member 4 1.64888
MAGT1 magnesium transporter 1 1.64888
ATP7A ATPase, Cu++ transporting, alpha polypeptide 1.64888
COX7B cytochrome c oxidase subunit VIIb 1.64888
CHKB choline kinase beta 1.64864
MAPK8IP2 mitogen-activated protein kinase 8 interacting protein 2 1.64836
SYCE3 synaptonemal complex central element protein 3 1.64832
KLHDC7B kelch domain containing 7B 1.64824
SRSF7 serine/arginine-rich splicing factor 7 1.63895
GALM galactose mutarotase (aldose 1-epimerase) 1.6389
MIR27A microRNA 27a 1.63687
MIR181C microRNA 181c 1.63687
MIR24-2 microRNA 24-2 1.63687
C19ORF57 chromosome 19 open reading frame 57 1.63687
NANOS3 nanos homolog 3 (Drosophila) 1.63687
MIR181D microRNA 181d 1.63687
LOC284454 uncharacterized LOC284454 1.63687
MIR23A microRNA 23a 1.63687
C19ORF53 chromosome 19 open reading frame 53 1.63456
CCDC130 coiled-coil domain containing 130 1.63292
MRI1 methylthioribose-1-phosphate isomerase 1 1.63292
ADGRE3 adhesion G protein-coupled receptor E3 1.6317
CASP14 caspase 14, apoptosis-related cysteine peptidase 1.62063
RLIM ring finger protein, LIM domain interacting 1.61693
IL1RAPL2 interleukin 1 receptor accessory protein-like 2 1.61691
SPIN2A spindlin family, member 2A 1.61553
SPIN2B spindlin family, member 2B 1.61545
ATRX alpha thalassemia/mental retardation syndrome X-linked 1.61407
TMSB15B thymosin beta 15B 1.6111
ZSWIM4 zinc finger, SWIM-type containing 4 1.61011
DDX39A DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A 1.60617
LINC00893 long intergenic non-protein coding RNA 893 1.59916
IDS iduronate 2-sulfatase 1.59912
ILVBL ilvB (bacterial acetolactate synthase)-like 1.58832
SYDE1 synapse defective 1, Rho GTPase, homolog 1 (C. elegans) 1.58832
OR1I1 olfactory receptor, family 1, subfamily I, member 1 1.58811
MIR545 microRNA 545 1.58481
MIR421 microRNA 421 1.58481
MIR374C microRNA 374c 1.58481
ZCCHC13 zinc finger, CCHC domain containing 13 1.58481
MIR374B microRNA 374b 1.58481
MIR374A microRNA 374a 1.58481
XIST X inactive specific transcript (non-protein coding) 1.58481
SLC35E1 solute carrier family 35, member E1 1.58472
FGF16 fibroblast growth factor 16 1.58223
CCZ1B CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae) 1.57799
JPX JPX transcript, XIST activator (non-protein coding) 1.55536
SLC16A2 solute carrier family 16, member 2 (thyroid hormone transporter) 1.55536
H2BFM H2B histone family, member M 1.54895
CXORF40B chromosome X open reading frame 40B 1.54345
MAGEA11 melanoma antigen family A11 1.5423
CXORF40A chromosome X open reading frame 40A 1.54022
TMEM185A transmembrane protein 185A 1.52847
KIAA2022 KIAA2022 1.52809
FTX FTX transcript, XIST regulator (non-protein coding) 1.5278
H2BFWT H2B histone family, member W, testis-specific 1.52145
ODF3B outer dense fiber of sperm tails 3B 1.51538
ABCB7 ATP-binding cassette, sub-family B (MDR/TAP), member 7 1.50837
ZDHHC15 zinc finger, DHHC-type containing 15 1.50819
AFF2 AF4/FMR2 family, member 2 1.50487
CYP4F12 cytochrome P450, family 4, subfamily F, polypeptide 12 1.50204
TSIX TSIX transcript, XIST antisense RNA 1.50195
LINC01420 long intergenic non-protein coding RNA 1420 1.50157
GLOD4 glyoxalase domain containing 4 1.49475
DUX4L4 double homeobox 4 like 4 1.48005
MAGEA8 melanoma antigen family A8 1.46266
ROCK1P1 Rho-associated, coiled-coil containing protein kinase 1 pseudogene 1 1.46236
APBA1 amyloid beta (A4) precursor protein-binding, family A, member 1 1.46062
MIR767 microRNA 767 1.44778
MIR105-1 microRNA 105-1 1.44778
MIR105-2 microRNA 105-2 1.44778
MAGEA5 melanoma antigen family A5 1.44576
FAM58A family with sequence similarity 58, member A 1.44567
DUSP9 dual specificity phosphatase 9 1.44564
PNCK pregnancy up-regulated nonubiquitous CaM kinase 1.44547
SLC6A8 solute carrier family 6 (neurotransmitter transporter), member 8 1.44547
PRH1-PRR4 PRH1-PRR4 readthrough 1.44439
MIR4656 microRNA 4656 1.42729
AP5Z1 adaptor-related protein complex 5, zeta 1 subunit 1.42729
FOXK1 forkhead box K1 1.42571
MAGEA12 melanoma antigen family A12 1.42526
MAGEA3 melanoma antigen family A3 1.42526
CSAG1 chondrosarcoma associated gene 1 1.42522
MAGEA6 melanoma antigen family A6 1.42522
CETN2 centrin, EF-hand protein, 2 1.42519
MAGEA10 melanoma antigen family A10 1.42441
MAGEA10-MAGEA5 MAGEA10-MAGEA5 readthrough 1.42431
BGN biglycan 1.42418
PNMA5 paraneoplastic Ma antigen family member 5 1.42416
PNMA3 paraneoplastic Ma antigen 3 1.42346
MED26 mediator complex subunit 26 1.42314
OPN1MW2 opsin 1 (cone pigments), medium-wave-sensitive 2 1.41955
OPN1MW opsin 1 (cone pigments), medium-wave-sensitive 1.41955
DOC2B double C2-like domains, beta 1.41407
SSR4 signal sequence receptor, delta 1.41285
SRPK3 SRSF protein kinase 3 1.41282
PLXNB3 plexin B3 1.41282
IDH3G isocitrate dehydrogenase 3 (NAD+) gamma 1.41282
BCAP31 B-cell receptor-associated protein 31 1.41277
ABCD1 ATP-binding cassette, sub-family D (ALD), member 1 1.41275
PDZD4 PDZ domain containing 4 1.4117
L1CAM L1 cell adhesion molecule 1.41135
TFAMP1 transcription factor A, mitochondrial pseudogene 1 1.41106
PSMG3-AS1 PSMG3 antisense RNA 1 (head to head) 1.41106
PSMG3 proteasome (prosome, macropain) assembly chaperone 3 1.41106
GABRQ gamma-aminobutyric acid (GABA) A receptor, theta 1.40539
NSDHL NAD(P) dependent steroid dehydrogenase-like 1.40421
TMEM187 transmembrane protein 187 1.40345
MIR3202-1 microRNA 3202-1 1.40345
MIR3202-2 microRNA 3202-2 1.40345
HCFC1 host cell factor C1 1.40342
ATP2B3 ATPase, Ca++ transporting, plasma membrane 3 1.40337
MIR718 microRNA 718 1.40323
IRAK1 interleukin-1 receptor-associated kinase 1 1.40323
NAA10 N(alpha)-acetyltransferase 10, NatA catalytic subunit 1.40232
RENBP renin binding protein 1.40232
OPN1LW opsin 1 (cone pigments), long-wave-sensitive 1.39903
TEX28 testis expressed 28 1.39899
TKTL1 transketolase-like 1 1.39866
MICALL2 MICAL-like 2 1.39818
MIR384 microRNA 384 1.39731
INTS1 integrator complex subunit 1 1.3932
TMEM184A transmembrane protein 184A 1.39148
MAFK v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog K 1.39148
AVPR2 arginine vasopressin receptor 2 1.39142
CARD11 caspase recruitment domain family, member 11 1.39129
FTSJ2 FtsJ RNA methyltransferase homolog 2 (E. coli) 1.38812
NUDT1 nudix (nucleoside diphosphate linked moiety X)-type motif 1 1.3877
SNX8 sorting nexin 8 1.38724
HAUS7 HAUS augmin-like complex, subunit 7 1.38409
GABRA3 gamma-aminobutyric acid (GABA) A receptor, alpha 3 1.38356
MECP2 methyl CpG binding protein 2 1.38338
MAGEA1 melanoma antigen family A1 1.38303
ZNF275 zinc finger protein 275 1.383
ZFP92 ZFP92 zinc finger protein 1.38291
ARHGAP4 Rho GTPase activating protein 4 1.38256
LOC653486 1.38243
ELFN1 extracellular leucine-rich repeat and fibronectin type III domain containing 1 1.3808
MIR4655 microRNA 4655 1.38011
EIF3B eukaryotic translation initiation factor 3, subunit B 1.37723
OR2V2 olfactory receptor, family 2, subfamily V, member 2 1.37694
CHST12 carbohydrate (chondroitin 4) sulfotransferase 12 1.37431
BRCC3 BRCA1/BRCA2-containing complex, subunit 3 1.37287
FUNDC2 FUN14 domain containing 2 1.37284
CMC4 C-x(9)-C motif containing 4 1.37284
MTCP1 mature T-cell proliferation 1 1.37284
BRAT1 BRCA1-associated ATM activator 1 1.37142
AMZ1 archaelysin family metallopeptidase 1 1.37021
TTYH3 tweety family member 3 1.36981
LOC100506388 uncharacterized LOC100506388 1.36795
RAB39B RAB39B, member RAS oncogene family 1.36648
CLIC2 chloride intracellular channel 2 1.36633
TREX2 three prime repair exonuclease 2 1.36538
FAM3A family with sequence similarity 3, member A 1.36528
ZNF185 zinc finger protein 185 (LIM domain) 1.36399
RPL10 ribosomal protein L10 1.36372
SNORA70 small nucleolar RNA, H/ACA box 70 1.36372
C17ORF97 chromosome 17 open reading frame 97 1.36364
MIR4648 microRNA 4648 1.35867
LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase 1.35856
RPH3AL rabphilin 3A-like (without C2 domains) 1.35153
MAD1L1 MAD1 mitotic arrest deficient-like 1 (yeast) 1.34906
G6PD glucose-6-phosphate dehydrogenase 1.3472
IKBKG inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma 1.34715
TAZ tafazzin 1.34562
DNASE1L1 deoxyribonuclease I-like 1 1.34562
ATP6AP1 ATPase, H+ transporting, lysosomal accessory protein 1 1.34556
FAM50A family with sequence similarity 50, member A 1.34412
GDI1 GDP dissociation inhibitor 1 1.34412
UPRT uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) 1.3418
FAM101B family with sequence similarity 101, member B 1.33716
IQCE IQ motif containing E 1.3333
COL3A1 collagen, type III, alpha 1 1.32994
MIR1245B microRNA 1245b 1.32988
MIR1245A microRNA 1245a 1.32988
MIR3606 microRNA 3606 1.32988
SMIM9 small integral membrane protein 9 1.32984
SLC10A3 solute carrier family 10, member 3 1.32977
F8 coagulation factor VIII, procoagulant component 1.32977
UBL4A ubiquitin-like 4A 1.32949
LAGE3 L antigen family, member 3 1.32821
PLXNA3 plexin A3 1.32821
CTAG2 cancer/testis antigen 2 1.32802

low copy number

Symbol Name Standardized Value
PLSCR1 phospholipid scramblase 1 -3.21049
MIR181A1HG MIR181A1 host gene -2.74393
PTCHD3 patched domain containing 3 -2.71271
HS6ST2 heparan sulfate 6-O-sulfotransferase 2 -2.59447
PCDHGA1 protocadherin gamma subfamily A, 1 -2.35023
PCDHGA6 protocadherin gamma subfamily A, 6 -2.35023
PCDHGA7 protocadherin gamma subfamily A, 7 -2.35023
PCDHGA4 protocadherin gamma subfamily A, 4 -2.35023
PCDHGB2 protocadherin gamma subfamily B, 2 -2.35023
PCDHGB5 protocadherin gamma subfamily B, 5 -2.35023
PCDHGB6 protocadherin gamma subfamily B, 6 -2.35023
PCDHGB7 protocadherin gamma subfamily B, 7 -2.35023
PCDHGB1 protocadherin gamma subfamily B, 1 -2.35023
PCDHGA3 protocadherin gamma subfamily A, 3 -2.35023
PCDHGA2 protocadherin gamma subfamily A, 2 -2.35023
PCDHGA8 protocadherin gamma subfamily A, 8 -2.35023
PCDHGA12 protocadherin gamma subfamily A, 12 -2.35023
PCDHGA11 protocadherin gamma subfamily A, 11 -2.35023
PCDHGB3 protocadherin gamma subfamily B, 3 -2.35023
PCDHGA5 protocadherin gamma subfamily A, 5 -2.35023
PCDHGA9 protocadherin gamma subfamily A, 9 -2.35023
PCDHGA10 protocadherin gamma subfamily A, 10 -2.35023
PCDHGB4 protocadherin gamma subfamily B, 4 -2.35023
ALDH9A1 aldehyde dehydrogenase 9 family, member A1 -2.29886
LSM8 LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae) -2.19986
TRPC7 transient receptor potential cation channel, subfamily C, member 7 -2.19348
LOC340074 uncharacterized LOC340074 -2.13952
BEND3P3 BEN domain containing 3 pseudogene 3 -2.09105
OR52E8 olfactory receptor, family 52, subfamily E, member 8 -2.08946
BCAS3 breast carcinoma amplified sequence 3 -2.08517
TIMM23 translocase of inner mitochondrial membrane 23 homolog (yeast) -2.0428
NCOR2 nuclear receptor corepressor 2 -2.00401
CTSLP2 cathepsin L pseudogene 2 -1.95263
GRAPL GRB2-related adaptor protein-like -1.89019
SLC36A3 solute carrier family 36, member 3 -1.85782
GABRB3 gamma-aminobutyric acid (GABA) A receptor, beta 3 -1.80839
PARP8 poly (ADP-ribose) polymerase family, member 8 -1.80541
ARHGEF12 Rho guanine nucleotide exchange factor (GEF) 12 -1.78161
TMLHE trimethyllysine hydroxylase, epsilon -1.76093
GCNT1 glucosaminyl (N-acetyl) transferase 1, core 2 -1.71215
SMIM10L2B small integral membrane protein 10 like 2B -1.64099
RAP2C RAP2C, member of RAS oncogene family -1.63726
STK26 serine/threonine protein kinase 26 -1.63726
MBD5 methyl-CpG binding domain protein 5 -1.63076
SEC24D SEC24 family member D -1.61253
MIR424 microRNA 424 -1.60693
MIR503HG MIR503 host gene -1.60693
MIR19B2 microRNA 19b-2 -1.60693
MIR542 microRNA 542 -1.60693
FAM127B family with sequence similarity 127, member B -1.60693
FAM127C family with sequence similarity 127, member C -1.60693
MIR20B microRNA 20b -1.60693
FAM127A family with sequence similarity 127, member A -1.60693
MIR450A2 microRNA 450a-2 -1.60693
PHF6 PHD finger protein 6 -1.60693
MIR18B microRNA 18b -1.60693
PLAC1 placenta-specific 1 -1.60693
MIR450A1 microRNA 450a-1 -1.60693
MIR92A2 microRNA 92a-2 -1.60693
MIR503 microRNA 503 -1.60693
SMIM10 small integral membrane protein 10 -1.60693
CCDC160 coiled-coil domain containing 160 -1.60693
MIR450B microRNA 450b -1.60693
MIR363 microRNA 363 -1.60693
MIR106A microRNA 106a -1.60693
LINC00629 long intergenic non-protein coding RNA 629 -1.60693
MBNL3 muscleblind-like splicing regulator 3 -1.60342
HPRT1 hypoxanthine phosphoribosyltransferase 1 -1.5995
TFDP3 transcription factor Dp family, member 3 -1.57548
USP26 ubiquitin specific peptidase 26 -1.57548
GPC4 glypican 4 -1.57548
FAM122C family with sequence similarity 122C -1.57546
FAM122B family with sequence similarity 122B -1.57546
MOSPD1 motile sperm domain containing 1 -1.57546
PGA3 pepsinogen 3, group I (pepsinogen A) -1.57024
PGA4 pepsinogen 4, group I (pepsinogen A) -1.5489
HS6ST2-AS1 HS6ST2 antisense RNA 1 -1.54659
FRMD7 FERM domain containing 7 -1.54359
TGIF2LX TGFB-induced factor homeobox 2-like, X-linked -1.53621
CPXCR1 CPX chromosome region, candidate 1 -1.5362
SNX29 sorting nexin 29 -1.52506
GPC3 glypican 3 -1.51919
OR2T2 olfactory receptor, family 2, subfamily T, member 2 -1.49542
OR2T3 olfactory receptor, family 2, subfamily T, member 3 -1.43455
ZDHHC11 zinc finger, DHHC-type containing 11 -1.43117
TGIF2LY TGFB-induced factor homeobox 2-like, Y-linked -1.40265
PABPC5 poly(A) binding protein, cytoplasmic 5 -1.4019
MRGPRX1 MAS-related GPR, member X1 -1.40055
ZNF205 zinc finger protein 205 -1.33119
ZNF213 zinc finger protein 213 -1.33119
ZNF205-AS1 ZNF205 antisense RNA 1 -1.33119
NOX5 NADPH oxidase, EF-hand calcium binding domain 5 -1.33034
FBXL7 F-box and leucine-rich repeat protein 7 -1.32672