SW620 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

65 genes with high or low copy number in SW620 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
LINC00922 long intergenic non-protein coding RNA 922 2.93899
CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) 2.93899
ISM1 isthmin 1, angiogenesis inhibitor 2.59653
ISM1-AS1 ISM1 antisense RNA 1 2.59653
SPTLC3 serine palmitoyltransferase, long chain base subunit 3 2.59653
IGFBP1 insulin-like growth factor binding protein 1 2.49065
TASP1 taspase, threonine aspartase, 1 2.49065
IGFBP3 insulin-like growth factor binding protein 3 2.49065
SEPT7P2 septin 7 pseudogene 2 2.44392
ADCY1 adenylate cyclase 1 (brain) 2.44392
C7ORF65 chromosome 7 open reading frame 65 2.08712
C7ORF69 chromosome 7 open reading frame 69 2.08712
LINC00525 long intergenic non-protein coding RNA 525 2.08712
TNS3 tensin 3 2.08334
PKD1L1 polycystic kidney disease 1 like 1 2.08334
SUN3 Sad1 and UNC84 domain containing 3 2.08334
HUS1 HUS1 checkpoint homolog (S. pombe) 2.08334
C7ORF57 chromosome 7 open reading frame 57 2.08334
UPP1 uridine phosphorylase 1 2.08334
ABCA13 ATP-binding cassette, sub-family A (ABC1), member 13 2.07776
MIR1207 microRNA 1207 2.07136
MIR1208 microRNA 1208 2.07136
KCNJ8 potassium channel, inwardly rectifying subfamily J, member 8 2.06316
ST8SIA1 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 2.0615
ABCC9 ATP-binding cassette, sub-family C (CFTR/MRP), member 9 2.06105
CMAS cytidine monophosphate N-acetylneuraminic acid synthetase 2.06105
ETNK1 ethanolamine kinase 1 2.05973
C2CD5 C2 calcium-dependent domain containing 5 2.05965
C12ORF71 chromosome 12 open reading frame 71 2.05864
ARNTL2 aryl hydrocarbon receptor nuclear translocator-like 2 2.05864
FGFR1OP2 FGFR1 oncogene partner 2 2.05864
MED21 mediator complex subunit 21 2.05864
TM7SF3 transmembrane 7 superfamily member 3 2.05864
BHLHE41 basic helix-loop-helix family, member e41 2.05778
STK38L serine/threonine kinase 38 like 2.05778
ASUN asunder spermatogenesis regulator 2.05778
MIR920 microRNA 920 2.05673
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 2.05661
RASSF8-AS1 RASSF8 atnisense RNA 1 2.05661
MIR4302 microRNA 4302 2.05635
SSPN sarcospan 2.05635
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 2.0557
LINC00477 long intergenic non-protein coding RNA 477 2.05441
SOX5 SRY (sex determining region Y)-box 5 2.05408
BCAT1 branched chain amino-acid transaminase 1, cytosolic 2.05311
C12ORF77 chromosome 12 open reading frame 77 2.05311
LRMP lymphoid-restricted membrane protein 2.05242
LYRM5 LYR motif containing 5 2.0521
CASC1 cancer susceptibility candidate 1 2.0521
KRAS Kirsten rat sarcoma viral oncogene homolog 2.05093
PVT1 Pvt1 oncogene (non-protein coding) 2.04585

low copy number

Symbol Name Standardized Value
LOC439994 uncharacterized LOC439994 -3.61078
NUTM2A-AS1 NUTM2A antisense RNA 1 -3.57558
LRRTM4 leucine rich repeat transmembrane neuronal 4 -3.11641
NSFP1 N-ethylmaleimide-sensitive factor pseudogene 1 -2.89637
MIR744 microRNA 744 -2.89201
MAP2K4 mitogen-activated protein kinase kinase 4 -2.85607
SMAD4 SMAD family member 4 -2.82872
CCSER1 coiled-coil serine-rich protein 1 -2.82606
MIR4767 microRNA 4767 -2.82043
EEF1DP3 eukaryotic translation elongation factor 1 delta pseudogene 3 -2.80776
HDHD1 haloacid dehalogenase-like hydrolase domain containing 1 -2.80688
STS steroid sulfatase (microsomal), isozyme S -2.7778
ALG1L2 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase-like 2 -2.73329
BTNL3 butyrophilin-like 3 -2.72661