SW780 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: transitional cell carcinoma (Cell Line Ontology, CLO_0009199)
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Genes

46 genes with high or low copy number in SW780 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value

low copy number

Symbol Name Standardized Value
MIR147A microRNA 147a -5.12655
HEMK1 HemK methyltransferase family member 1 -3.83684
DOCK3 dedicator of cytokinesis 3 -3.83684
CISH cytokine inducible SH2-containing protein -3.83684
C3ORF18 chromosome 3 open reading frame 18 -3.83684
MAPKAPK3 mitogen-activated protein kinase-activated protein kinase 3 -3.83684
MIR4787 microRNA 4787 -3.83684
GNAT1 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1 -3.7119
RBM5 RNA binding motif protein 5 -3.7119
HYAL1 hyaluronoglucosaminidase 1 -3.7119
SEMA3B sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B -3.7119
NAT6 N-acetyltransferase 6 (GCN5-related) -3.7119
IFRD2 interferon-related developmental regulator 2 -3.7119
LSMEM2 leucine-rich single-pass membrane protein 2 -3.7119
HYAL3 hyaluronoglucosaminidase 3 -3.7119
GNAI2 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 -3.7119
SLC38A3 solute carrier family 38, member 3 -3.7119
SEMA3F sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F -3.7119
RBM6 RNA binding motif protein 6 -3.7119
HYAL2 hyaluronoglucosaminidase 2 -3.61078
RASSF1 Ras association (RalGDS/AF-6) domain family member 1 -3.61078
CYB561D2 cytochrome b561 family, member D2 -3.61078
TUSC2 tumor suppressor candidate 2 -3.61078
NPRL2 nitrogen permease regulator-like 2 (S. cerevisiae) -3.61078
TMEM115 transmembrane protein 115 -3.61078
ZMYND10 zinc finger, MYND-type containing 10 -3.61078
CACNA2D2 calcium channel, voltage-dependent, alpha 2/delta subunit 2 -3.61078
DSTN destrin (actin depolymerizing factor) -3.36169
OSTF1 osteoclast stimulating factor 1 -3.24687
NMRK1 nicotinamide riboside kinase 1 -3.24687
RRBP1 ribosome binding protein 1 -3.15836
FHOD3 formin homology 2 domain containing 3 -3.15836
BANF2 barrier to autointegration factor 2 -3.15836
OR52N5 olfactory receptor, family 52, subfamily N, member 5 -2.84224
SPATA31A6 SPATA31 subfamily A, member 6 -2.83114
OR2T11 olfactory receptor, family 2, subfamily T, member 11 (gene/pseudogene) -2.78432
OR2T10 olfactory receptor, family 2, subfamily T, member 10 -2.78237
CNTNAP3B contactin associated protein-like 3B -2.7778
ELAVL2 ELAV like neuron-specific RNA binding protein 2 -2.74526
IFNA6 interferon, alpha 6 -2.74032
IFNA13 interferon, alpha 13 -2.73798
IFNA2 interferon, alpha 2 -2.73608
OR52N1 olfactory receptor, family 52, subfamily N, member 1 -2.73524
IFNA8 interferon, alpha 8 -2.73024
IFNA1 interferon, alpha 1 -2.72828
IFNE interferon, epsilon -2.72466