SW837 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

134 genes with high or low copy number in SW837 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
BCAP31 B-cell receptor-associated protein 31 4.51153
GPR50 G protein-coupled receptor 50 4.51153
CXORF40A chromosome X open reading frame 40A 4.51153
MAGEA11 melanoma antigen family A11 4.51153
BGN biglycan 4.51153
VMA21 VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) 4.51153
PDZD4 PDZ domain containing 4 4.51153
GABRA3 gamma-aminobutyric acid (GABA) A receptor, alpha 3 4.51153
MIR767 microRNA 767 4.51153
SLC6A8 solute carrier family 6 (neurotransmitter transporter), member 8 4.51153
LINC00893 long intergenic non-protein coding RNA 893 4.51153
MAGEA3 melanoma antigen family A3 4.51153
ABCD1 ATP-binding cassette, sub-family D (ALD), member 1 4.51153
MAGEA9B melanoma antigen family A9B 4.51153
MIR105-1 microRNA 105-1 4.51153
MIR105-2 microRNA 105-2 4.51153
MAGEA2 melanoma antigen family A2 4.51153
PASD1 PAS domain containing 1 4.51153
MIR4330 microRNA 4330 4.51153
PLXNB3 plexin B3 4.51153
L1CAM L1 cell adhesion molecule 4.51153
CSAG3 CSAG family, member 3 4.51153
CSAG2 CSAG family, member 2 4.51153
IDH3G isocitrate dehydrogenase 3 (NAD+) gamma 4.51153
SRPK3 SRSF protein kinase 3 4.51153
TMEM185A transmembrane protein 185A 4.51153
HMGB3 high mobility group box 3 4.51153
TREX2 three prime repair exonuclease 2 4.51153
DUSP9 dual specificity phosphatase 9 4.51153
HSFX2 heat shock transcription factor family, X linked 2 4.51153
ZFP92 ZFP92 zinc finger protein 4.51153
CD99L2 CD99 molecule-like 2 4.51153
AVPR2 arginine vasopressin receptor 2 4.51153
HAUS7 HAUS augmin-like complex, subunit 7 4.51153
PNCK pregnancy up-regulated nonubiquitous CaM kinase 4.51153
SSR4 signal sequence receptor, delta 4.51153
ATP2B3 ATPase, Ca++ transporting, plasma membrane 3 4.51153
IDS iduronate 2-sulfatase 4.51153
FAM58A family with sequence similarity 58, member A 4.51153
TAZ tafazzin 3.12177
ZNF185 zinc finger protein 185 (LIM domain) 3.12177
IRAK1 interleukin-1 receptor-associated kinase 1 3.12177
PNMA3 paraneoplastic Ma antigen 3 3.12177
PNMA5 paraneoplastic Ma antigen family member 5 3.12177
PNMA6B paraneoplastic Ma antigen family member 6B (pseudogene) 3.12177
SNORA56 small nucleolar RNA, H/ACA box 56 3.12177
MECP2 methyl CpG binding protein 2 3.12177
FAM223B family with sequence similarity 223, member B (non-protein coding) 3.12177
RPL10 ribosomal protein L10 3.12177
ARHGAP4 Rho GTPase activating protein 4 3.12177
NSDHL NAD(P) dependent steroid dehydrogenase-like 3.12177
ATP6AP1 ATPase, H+ transporting, lysosomal accessory protein 1 3.12177
CETN2 centrin, EF-hand protein, 2 3.12177
RENBP renin binding protein 3.12177
VBP1 von Hippel-Lindau binding protein 1 3.12177
MAGEA1 melanoma antigen family A1 3.12177
HCFC1 host cell factor C1 3.12177
NAA10 N(alpha)-acetyltransferase 10, NatA catalytic subunit 3.12177
TEX28 testis expressed 28 3.12177
MIR3202-1 microRNA 3202-1 3.12177
CTAG1B cancer/testis antigen 1B 3.12177
MIR718 microRNA 718 3.12177
RAB39B RAB39B, member RAS oncogene family 3.12177
TMEM187 transmembrane protein 187 3.12177
LAGE3 L antigen family, member 3 3.12177
UBL4A ubiquitin-like 4A 3.12177
ZNF275 zinc finger protein 275 3.12177
IKBKG inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma 3.12177
DNASE1L1 deoxyribonuclease I-like 1 3.12177
FAM50A family with sequence similarity 50, member A 3.12177
DKC1 dyskeratosis congenita 1, dyskerin 3.12177
MIR3202-2 microRNA 3202-2 3.12177
GDI1 GDP dissociation inhibitor 1 3.12177
MPP1 membrane protein, palmitoylated 1, 55kDa 3.12177
PLXNA3 plexin A3 3.12177
GAB3 GRB2-associated binding protein 3 3.12177
OPN1MW opsin 1 (cone pigments), medium-wave-sensitive 3.12177
SLC10A3 solute carrier family 10, member 3 3.12177
CTAG2 cancer/testis antigen 2 3.12177
SNORA36A small nucleolar RNA, H/ACA box 36A 3.12177
SMIM9 small integral membrane protein 9 3.12177
PNMA6A paraneoplastic Ma antigen family member 6A 3.12177
OPN1LW opsin 1 (cone pigments), long-wave-sensitive 3.12177
SNORA70 small nucleolar RNA, H/ACA box 70 2.76305
MAGEA10-MAGEA5 MAGEA10-MAGEA5 readthrough 2.15402
MAGEA5 melanoma antigen family A5 2.15402
GABRQ gamma-aminobutyric acid (GABA) A receptor, theta 2.15316
FATE1 fetal and adult testis expressed 1 2.15316
CSAG4 CSAG family, member 4 (pseudogene) 2.15316
CNGA2 cyclic nucleotide gated channel alpha 2 2.15316
MAGEA12 melanoma antigen family A12 2.15316
CSAG1 chondrosarcoma associated gene 1 2.15316
PRRG3 proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane) 2.15316
MIR452 microRNA 452 2.15316
MAGEA10 melanoma antigen family A10 2.15316
GABRE gamma-aminobutyric acid (GABA) A receptor, epsilon 2.15316
MAGEA6 melanoma antigen family A6 2.15316
MAGEA4 melanoma antigen family A4 2.15316
H2AFB3 H2A histone family, member B3 2.14311
EMD emerin 2.14311
MIR1184-3 microRNA 1184-3 2.14311
FLNA filamin A, alpha 2.14311
F8A1 coagulation factor VIII-associated 1 2.14311
TKTL1 transketolase-like 1 2.14311
TMLHE-AS1 TMLHE antisense RNA 1 2.14116
TMLHE trimethyllysine hydroxylase, epsilon 2.14116
G6PD glucose-6-phosphate dehydrogenase 2.14116
FAM3A family with sequence similarity 3, member A 2.14116
CMC4 C-x(9)-C motif containing 4 2.14116
FUNDC2 FUN14 domain containing 2 2.14116
MTCP1 mature T-cell proliferation 1 2.14116
BRCC3 BRCA1/BRCA2-containing complex, subunit 3 2.14116
CLIC2 chloride intracellular channel 2 2.14116
F8 coagulation factor VIII, procoagulant component 2.14116

low copy number

Symbol Name Standardized Value
BET1L Bet1 golgi vesicular membrane trafficking protein-like -3.7119
ODF3 outer dense fiber of sperm tails 3 -3.7119
RIC8A RIC8 guanine nucleotide exchange factor A -3.7119
SIRT3 sirtuin 3 -3.7119
ACTRT1 actin-related protein T1 -3.53061
SPANXA2-OT1 SPANXA2 overlapping transcript 1 -3.50611
PTPRG-AS1 PTPRG antisense RNA 1 -3.29865
SLFN12 schlafen family member 12 -3.24687
SPRY3 sprouty homolog 3 (Drosophila) -3.14331
VAMP7 vesicle-associated membrane protein 7 -3.14331
SLFN11 schlafen family member 11 -3.11641
PTPRG protein tyrosine phosphatase, receptor type, G -3.06578
LRRN3 leucine rich repeat neuronal 3 -2.98526
OR52N5 olfactory receptor, family 52, subfamily N, member 5 -2.84224
CCSER1 coiled-coil serine-rich protein 1 -2.82606
MACROD2 MACRO domain containing 2 -2.81481
MACROD2-AS1 MACROD2 antisense RNA 1 -2.81384
STS steroid sulfatase (microsomal), isozyme S -2.7778
OR52N1 olfactory receptor, family 52, subfamily N, member 1 -2.73524
ALG1L2 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase-like 2 -2.73329