SW872 Gene Set
Genes
35 genes with high or low copy number in SW872 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
high copy number
| Symbol |
Name |
Standardized Value |
|
ADAM19
|
ADAM metallopeptidase domain 19
|
4.51153
|
|
FAM71B
|
family with sequence similarity 71, member B
|
4.51153
|
|
MED7
|
mediator complex subunit 7
|
4.51153
|
|
PPP1R2P3
|
protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 3
|
4.51153
|
|
RGS7BP
|
regulator of G-protein signaling 7 binding protein
|
4.51153
|
|
HAVCR2
|
hepatitis A virus cellular receptor 2
|
4.51153
|
|
ITK
|
IL2-inducible T-cell kinase
|
4.51153
|
|
MYOT
|
myotilin
|
4.51153
|
|
TIMD4
|
T-cell immunoglobulin and mucin domain containing 4
|
4.51153
|
|
RNF180
|
ring finger protein 180
|
4.51153
|
|
PKD2L2
|
polycystic kidney disease 2-like 2
|
4.51153
|
|
CWC27
|
CWC27 spliceosome-associated protein homolog (S. cerevisiae)
|
4.51153
|
|
SGCD
|
sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)
|
4.51153
|
|
ADAMTS19
|
ADAM metallopeptidase with thrombospondin type 1 motif, 19
|
4.51153
|
|
CYFIP2
|
cytoplasmic FMR1 interacting protein 2
|
4.51153
|
|
FAM159B
|
family with sequence similarity 159, member B
|
4.51153
|
|
CHSY3
|
chondroitin sulfate synthase 3
|
4.51153
|
|
NIPAL4
|
NIPA-like domain containing 4
|
4.51153
|
|
HAVCR1
|
hepatitis A virus cellular receptor 1
|
4.51153
|
|
FAM13B
|
family with sequence similarity 13, member B
|
4.51153
|
|
FNDC9
|
fibronectin type III domain containing 9
|
4.51153
|
|
SREK1IP1
|
SREK1-interacting protein 1
|
4.51153
|
|
KIAA1024L
|
KIAA1024-like
|
4.51153
|
|
FNIP1
|
folliculin interacting protein 1
|
2.15402
|
|
CDC42SE2
|
CDC42 small effector 2
|
2.15402
|
|
RAPGEF6
|
Rap guanine nucleotide exchange factor (GEF) 6
|
2.15402
|
|
HINT1
|
histidine triad nucleotide binding protein 1
|
2.15316
|
|
LYRM7
|
LYR motif containing 7
|
2.15316
|
low copy number
| Symbol |
Name |
Standardized Value |
|
PAPSS2
|
3'-phosphoadenosine 5'-phosphosulfate synthase 2
|
-3.49112
|
|
MIR1233-2
|
microRNA 1233-2
|
-3.49112
|
|
ATAD1
|
ATPase family, AAA domain containing 1
|
-3.47205
|
|
CFL1P1
|
cofilin 1 (non-muscle) pseudogene 1
|
-3.47102
|
|
GOLGA8B
|
golgin A8 family, member B
|
-3.46838
|
|
KLLN
|
killin, p53-regulated DNA replication inhibitor
|
-3.46614
|
|
PTEN
|
phosphatase and tensin homolog
|
-3.45826
|
