SW954 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: squamous cell carcinoma (Cell Line Ontology, CLO_0009204)
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Genes

71 genes with high or low copy number in SW954 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
RCOR2 REST corepressor 2 2.76305
MARK2 MAP/microtubule affinity-regulating kinase 2 2.76305
OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 2.76305
COX8A cytochrome c oxidase subunit VIIIA (ubiquitous) 2.76305
NAA40 N(alpha)-acetyltransferase 40, NatD catalytic subunit 2.76305
MACROD1 MACRO domain containing 1 2.76305
SSH3 slingshot protein phosphatase 3 2.36889
CLCF1 cardiotrophin-like cytokine factor 1 2.36889
ADRBK1 adrenergic, beta, receptor kinase 1 2.36889
POLD4 polymerase (DNA-directed), delta 4, accessory subunit 2.36889
RAD9A RAD9 homolog A (S. pombe) 2.36889
TBC1D10C TBC1 domain family, member 10C 2.36889
ANKRD13D ankyrin repeat domain 13 family, member D 2.36889
LOC100130987 uncharacterized LOC100130987 2.36889
PPP1CA protein phosphatase 1, catalytic subunit, alpha isozyme 2.36889
PITPNM1 phosphatidylinositol transfer protein, membrane-associated 1 2.35236
CABP4 calcium binding protein 4 2.35236
NUDT8 nudix (nucleoside diphosphate linked moiety X)-type motif 8 2.35236
CORO1B coronin, actin binding protein, 1B 2.35236
GPR152 G protein-coupled receptor 152 2.35236
TBX10 T-box 10 2.35236
ACY3 aminoacylase 3 2.35236
AIP aryl hydrocarbon receptor interacting protein 2.35236
CARNS1 carnosine synthase 1 2.35236
RPS6KB2 ribosomal protein S6 kinase, 70kDa, polypeptide 2 2.35236
TMEM134 transmembrane protein 134 2.35236
KDM2A lysine (K)-specific demethylase 2A 2.35236
PTPRCAP protein tyrosine phosphatase, receptor type, C-associated protein 2.35236
CDK2AP2 cyclin-dependent kinase 2 associated protein 2 2.35236
DOC2GP double C2-like domains, gamma, pseudogene 2.35236
CABP2 calcium binding protein 2 2.35236
NDUFV1 NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 2.3178
GSTP1 glutathione S-transferase pi 1 2.3178
C11ORF72 chromosome 11 open reading frame 72 2.3178
MRPL21 mitochondrial ribosomal protein L21 2.23078
IGHMBP2 immunoglobulin mu binding protein 2 2.23078
MRGPRD MAS-related GPR, member D 2.22783
MRGPRF MAS-related GPR, member F 2.22633
MIR3664 microRNA 3664 2.22291
SHANK2-AS3 SHANK2 antisense RNA 3 2.22291
TPCN2 two pore segment channel 2 2.21258
FADD Fas (TNFRSF6)-associated via death domain 2.16564
MIR548K microRNA 548k 2.16564
PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 2.16459
MYEOV myeloma overexpressed 2.16459
CTTN cortactin 2.16307
FGF3 fibroblast growth factor 3 2.16307
ANO1 anoctamin 1, calcium activated chloride channel 2.16307
FGF4 fibroblast growth factor 4 2.16176
CCND1 cyclin D1 2.1605
FGF19 fibroblast growth factor 19 2.1605
ORAOV1 oral cancer overexpressed 1 2.16017
SHANK2-AS1 SHANK2 antisense RNA 1 2.05422
SHANK2 SH3 and multiple ankyrin repeat domains 2 2.04969

low copy number

Symbol Name Standardized Value
RAB27B RAB27B, member RAS oncogene family -3.06578
STARD6 StAR-related lipid transfer (START) domain containing 6 -3.06578
CCDC68 coiled-coil domain containing 68 -3.06578
DYNAP dynactin associated protein -3.06578
C18ORF54 chromosome 18 open reading frame 54 -3.06578
POLI polymerase (DNA directed) iota -3.0386
SNORA37 small nucleolar RNA, H/ACA box 37 -3.00478
TCF4 transcription factor 4 -3.00478
MBD2 methyl-CpG binding domain protein 2 -3.00478
MAPK4 mitogen-activated protein kinase 4 -3.00044
MRO maestro -2.969
DCC DCC netrin 1 receptor -2.93929
LOC100287225 uncharacterized LOC100287225 -2.91612
ME2 malic enzyme 2, NAD(+)-dependent, mitochondrial -2.89201
MEX3C mex-3 RNA binding family member C -2.87874
ELAC1 elaC ribonuclease Z 1 -2.86054
SMAD4 SMAD family member 4 -2.82872