Saquinavir_LS 180 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Saquinavir perturbation in LS 180 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Saquinavir_LS 180 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.299703
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.174159
LMO7 LIM domain 7 0.138071
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 0.127994
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.119587
NDRG1 N-myc downstream regulated 1 0.0841693
FTL ferritin, light polypeptide 0.0744157
MYO1E myosin IE 0.0735809
LGR4 leucine-rich repeat containing G protein-coupled receptor 4 0.0696215
TXNIP thioredoxin interacting protein 0.0676544
RPS12 ribosomal protein S12 0.0667862
LDHA lactate dehydrogenase A 0.0654955
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0651695
RNF145 ring finger protein 145 0.0629726
AREG amphiregulin 0.0592047
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.0581617
RPLP0 ribosomal protein, large, P0 0.0578857
B2M beta-2-microglobulin 0.0577156
LOC102724023 ES1 protein homolog, mitochondrial 0.0560811
TTC3 tetratricopeptide repeat domain 3 0.0548301
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0541786
CALR calreticulin 0.0504621
EIF1 eukaryotic translation initiation factor 1 0.0490548
TNFRSF21 tumor necrosis factor receptor superfamily, member 21 0.0479228
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0459872
SOX9 SRY (sex determining region Y)-box 9 0.0441656
HERPUD1 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 0.0439003
ERRFI1 ERBB receptor feedback inhibitor 1 0.0426137
KMT2E lysine (K)-specific methyltransferase 2E 0.0422862
FBXO11 F-box protein 11 0.0422077
AFF1 AF4/FMR2 family, member 1 0.0422006
MBNL1 muscleblind-like splicing regulator 1 0.0416842
ISG15 ISG15 ubiquitin-like modifier 0.0412152
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0410853
GAREM1 GRB2 associated regulator of MAPK1 subtype 1 0.0406316
ANXA1 annexin A1 0.0405079
MT2A metallothionein 2A 0.0398396
FOSB FBJ murine osteosarcoma viral oncogene homolog B 0.0391326
EXT1 exostosin glycosyltransferase 1 0.0374735
MUC13 mucin 13, cell surface associated 0.0366477
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0365467
ZSWIM6 zinc finger, SWIM-type containing 6 0.035983
TSC22D2 TSC22 domain family, member 2 0.0358359
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0345546
EPS8 epidermal growth factor receptor pathway substrate 8 0.0342347
RPL27A ribosomal protein L27a 0.0341702
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0340529
MED13 mediator complex subunit 13 0.0336482
MACF1 microtubule-actin crosslinking factor 1 0.0330517
TGFBR3 transforming growth factor, beta receptor III 0.0329851
FOS FBJ murine osteosarcoma viral oncogene homolog 0.0329784
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide 0.0321856
PARD3 par-3 family cell polarity regulator 0.0320152
TFG TRK-fused gene 0.0320059
RAPGEF2 Rap guanine nucleotide exchange factor (GEF) 2 0.0318336
FAM13A family with sequence similarity 13, member A 0.0318163
UBC ubiquitin C 0.0315689
MYO5B myosin VB 0.0310984
FHIP1A FHF complex subunit HOOK interacting protein 1A 0.0309144
RPS3 ribosomal protein S3 0.0308864
RBPJ recombination signal binding protein for immunoglobulin kappa J region 0.0305237
GFPT1 glutamine--fructose-6-phosphate transaminase 1 0.030247
SLC38A2 solute carrier family 38, member 2 0.0292343
PDIA6 protein disulfide isomerase family A, member 6 0.0292283
RPL37A ribosomal protein L37a 0.0282183
TRIB1 tribbles pseudokinase 1 0.0280367
WAC WW domain containing adaptor with coiled-coil 0.0277341
RPS8 ribosomal protein S8 0.0277292
RPLP1 ribosomal protein, large, P1 0.0277027
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A 0.0276079
INTS6 integrator complex subunit 6 0.0275885
SPAG9 sperm associated antigen 9 0.0275043
HILPDA hypoxia inducible lipid droplet-associated 0.0272063
PPDPF pancreatic progenitor cell differentiation and proliferation factor 0.0271817
MARCHF3 membrane associated ring-CH-type finger 3 0.0271349
WDR45B WD repeat domain 45B 0.0268553
MT1X metallothionein 1X 0.026564
UBE2B ubiquitin-conjugating enzyme E2B 0.0265405
CEMIP2 cell migration inducing hyaluronidase 2 0.0264558
COPA coatomer protein complex, subunit alpha 0.0264403
SIK3 SIK family kinase 3 0.0264219
TMC5 transmembrane channel-like 5 0.0262825
WSB1 WD repeat and SOCS box containing 1 0.0261013
RORA RAR-related orphan receptor A 0.0260981
PELI1 pellino E3 ubiquitin protein ligase 1 0.0259483
EMP1 epithelial membrane protein 1 0.0258746
SEC31A SEC31 homolog A (S. cerevisiae) 0.0252213
ATF3 activating transcription factor 3 0.0251985
MAGT1 magnesium transporter 1 0.0251891
ATP1B3 ATPase, Na+/K+ transporting, beta 3 polypeptide 0.0250694
RPS19 ribosomal protein S19 0.025023
MT1E metallothionein 1E 0.024947
DNAJC1 DnaJ (Hsp40) homolog, subfamily C, member 1 0.0246488
NR4A2 nuclear receptor subfamily 4, group A, member 2 0.0245399
CLDN4 claudin 4 0.0245339
DDIT3 DNA-damage-inducible transcript 3 0.0241972
RPL31 ribosomal protein L31 0.024049
ARHGAP42 Rho GTPase activating protein 42 0.02401
DDIT4 DNA-damage-inducible transcript 4 0.0239959
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 0.0235997

decreased expression

Symbol Name Standardized Value
NPSR1 neuropeptide S receptor 1 -0.218342
KRT8 keratin 8, type II -0.0995499
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.090466
AHNAK AHNAK nucleoprotein -0.0893383
KRT18 keratin 18, type I -0.0878136
ONECUT3 one cut homeobox 3 -0.0836198
NALF1 NALCN channel auxiliary factor 1 -0.0807589
TNS4 tensin 4 -0.07923
FLNB filamin B, beta -0.0750602
ANXA2 annexin A2 -0.0686598
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.0615835
PRSS3 protease, serine, 3 -0.0603794
ALCAM activated leukocyte cell adhesion molecule -0.0580133
GPHN gephyrin -0.0571911
RPS6 ribosomal protein S6 -0.0527533
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase -0.052442
ACTN4 actinin, alpha 4 -0.049421
KIF5B kinesin family member 5B -0.0477643
RNF43 ring finger protein 43 -0.0457155
HSD17B12 hydroxysteroid (17-beta) dehydrogenase 12 -0.0455482
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0450452
GCC2 GRIP and coiled-coil domain containing 2 -0.0447823
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 -0.0447727
PTPRR protein tyrosine phosphatase, receptor type, R -0.0430325
PTMA prothymosin, alpha -0.0413091
HMGB1 high mobility group box 1 -0.0406452
TPM4 tropomyosin 4 -0.0402136
MUC5AC mucin 5AC, oligomeric mucus/gel-forming -0.0393568
CALB1 calbindin 1, 28kDa -0.0392457
NFIA nuclear factor I/A -0.038736
DSG2 desmoglein 2 -0.0384614
SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein -0.0380732
EIF3A eukaryotic translation initiation factor 3, subunit A -0.0380041
TMEM45B transmembrane protein 45B -0.0376085
DEK DEK proto-oncogene -0.0369231
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0365697
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.03604
KLF3 Kruppel-like factor 3 (basic) -0.0355853
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) -0.0352381
FERMT1 fermitin family member 1 -0.0350473
PIGR polymeric immunoglobulin receptor -0.0343429
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.0338195
CDC42BPA CDC42 binding protein kinase alpha (DMPK-like) -0.0330898
PATJ PATJ crumbs cell polarity complex component -0.0330297
CEACAM5 carcinoembryonic antigen-related cell adhesion molecule 5 -0.0328356
GOLGA4 golgin A4 -0.0326865
MAML2 mastermind-like 2 (Drosophila) -0.0320968
SERPINB1 serpin peptidase inhibitor, clade B (ovalbumin), member 1 -0.0320582
TMSB10 thymosin beta 10 -0.0320553
SBF2 SET binding factor 2 -0.0318045
BAZ2B bromodomain adjacent to zinc finger domain, 2B -0.0317512
RPL23 ribosomal protein L23 -0.0317142
ANK3 ankyrin 3, node of Ranvier (ankyrin G) -0.03169
PARP4 poly (ADP-ribose) polymerase family, member 4 -0.0316594
FAT1 FAT atypical cadherin 1 -0.0304171
ANTXR2 anthrax toxin receptor 2 -0.0303856
CEMIP cell migration inducing protein, hyaluronan binding -0.0299787
SERBP1 SERPINE1 mRNA binding protein 1 -0.0285531
ITGB4 integrin, beta 4 -0.0279071
FRMD5 FERM domain containing 5 -0.0273794
SLC35F3 solute carrier family 35, member F3 -0.0267716
SAMD5 sterile alpha motif domain containing 5 -0.0266676
TAS2R14 taste receptor, type 2, member 14 -0.0264273
ITFG1 integrin alpha FG-GAP repeat containing 1 -0.0262933
VDR vitamin D (1,25- dihydroxyvitamin D3) receptor -0.0262821
TXNRD1 thioredoxin reductase 1 -0.0260865
SLCO1B3 solute carrier organic anion transporter family, member 1B3 -0.0260157
VCL vinculin -0.0259633
RPL14 ribosomal protein L14 -0.0258688
CAP1 CAP, adenylate cyclase-associated protein 1 (yeast) -0.0257141
CD46 CD46 molecule, complement regulatory protein -0.0256404
KRT19 keratin 19, type I -0.0256358
MYH9 myosin, heavy chain 9, non-muscle -0.0254752
ARPC2 actin related protein 2/3 complex, subunit 2, 34kDa -0.0252775
SMYD3 SET and MYND domain containing 3 -0.0252276
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B -0.0250616
HNRNPK heterogeneous nuclear ribonucleoprotein K -0.0248085
SLC20A1 solute carrier family 20 (phosphate transporter), member 1 -0.0246321
GPA33 glycoprotein A33 (transmembrane) -0.024445
RPL34 ribosomal protein L34 -0.0242741
HNRNPAB heterogeneous nuclear ribonucleoprotein A/B -0.0242591
MATR3 matrin 3 -0.0241734
PRELID2 PRELI domain containing 2 -0.0241254
SEPTIN10 septin 10 -0.0239138
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 -0.023665
KDM7A lysine (K)-specific demethylase 7A -0.0235377
HMGA1 high mobility group AT-hook 1 -0.0233904
EXOC4 exocyst complex component 4 -0.0231671
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 -0.0230344
TBC1D5 TBC1 domain family, member 5 -0.022987
PCDHB16 protocadherin beta 16 -0.0229656
DENND1A DENN/MADD domain containing 1A -0.0229047
MUC17 mucin 17, cell surface associated -0.0227125
BCKDHB branched chain keto acid dehydrogenase E1, beta polypeptide -0.0226196
TCF12 transcription factor 12 -0.0224622
BIRC6 baculoviral IAP repeat containing 6 -0.0223577
GOLGB1 golgin B1 -0.0223176
ASPH aspartate beta-hydroxylase -0.0223028
FHIT fragile histidine triad -0.0221706
PDE4D phosphodiesterase 4D, cAMP-specific -0.022164