Simotinib_SNU-423 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Simotinib perturbation in SNU-423 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Simotinib_SNU-423 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.193152
NAMPT nicotinamide phosphoribosyltransferase 0.160542
FRMD4A FERM domain containing 4A 0.157281
TRIO trio Rho guanine nucleotide exchange factor 0.144453
FN1 fibronectin 1 0.138628
PDE10A phosphodiesterase 10A 0.128949
PGK1 phosphoglycerate kinase 1 0.114009
FNDC3B fibronectin type III domain containing 3B 0.107131
CD44 CD44 molecule (Indian blood group) 0.100566
DST dystonin 0.0915255
NAV2 neuron navigator 2 0.0913202
CADM1 cell adhesion molecule 1 0.0870498
PHLDB2 pleckstrin homology-like domain, family B, member 2 0.0845782
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0829913
MYH9 myosin, heavy chain 9, non-muscle 0.0822766
MYOF myoferlin 0.0819956
EXT1 exostosin glycosyltransferase 1 0.0812791
TENT5A terminal nucleotidyltransferase 5A 0.0810292
BICC1 BicC family RNA binding protein 1 0.079123
LDHA lactate dehydrogenase A 0.0772005
COL6A3 collagen, type VI, alpha 3 0.0749857
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0740689
VCL vinculin 0.0737137
ELL2 elongation factor, RNA polymerase II, 2 0.0722225
JMJD1C jumonji domain containing 1C 0.0704053
ZNF292 zinc finger protein 292 0.0677009
EDIL3 EGF-like repeats and discoidin I-like domains 3 0.0656342
CENPF centromere protein F, 350/400kDa 0.0637529
MKI67 marker of proliferation Ki-67 0.0634902
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 0.0634832
USP9X ubiquitin specific peptidase 9, X-linked 0.0603474
SPARC secreted protein, acidic, cysteine-rich (osteonectin) 0.0594223
SOD2 superoxide dismutase 2, mitochondrial 0.0592042
VCAN versican 0.0580655
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 0.0580172
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0571681
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0554339
ZMYND8 zinc finger, MYND-type containing 8 0.0537892
ANLN anillin, actin binding protein 0.0532178
RTN4 reticulon 4 0.052191
ANXA2 annexin A2 0.0508839
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 0.0505105
FLNB filamin B, beta 0.0499287
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) 0.0491551
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0489018
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.047989
KIF4A kinesin family member 4A 0.0478247
MARCKS myristoylated alanine-rich protein kinase C substrate 0.0466506
SPAG9 sperm associated antigen 9 0.0459539
THBS1 thrombospondin 1 0.0456334
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0456255
RB1CC1 RB1-inducible coiled-coil 1 0.0455884
COL8A1 collagen, type VIII, alpha 1 0.0455199
TPX2 TPX2, microtubule-associated 0.0454352
LAMP2 lysosomal-associated membrane protein 2 0.0450929
TPM4 tropomyosin 4 0.0449431
UBE2E2 ubiquitin-conjugating enzyme E2E 2 0.0439426
TGFBI transforming growth factor, beta-induced, 68kDa 0.0425469
PARP14 poly (ADP-ribose) polymerase family, member 14 0.0411777
IL6ST interleukin 6 signal transducer 0.040956
KLF7 Kruppel-like factor 7 (ubiquitous) 0.0409083
SBF2 SET binding factor 2 0.0408322
CDCP1 CUB domain containing protein 1 0.0395669
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 0.0394417
ARRDC3 arrestin domain containing 3 0.0393367
COL1A2 collagen, type I, alpha 2 0.0392586
DIAPH3 diaphanous-related formin 3 0.038861
SMC4 structural maintenance of chromosomes 4 0.038401
PRELID2 PRELI domain containing 2 0.0377804
MX1 MX dynamin-like GTPase 1 0.0363578
TMEM123 transmembrane protein 123 0.0363198
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 0.0362458
TUBB tubulin, beta class I 0.0361157
CUL4B cullin 4B 0.0359497
MXI1 MAX interactor 1, dimerization protein 0.0355306
ACTN1 actinin, alpha 1 0.0346303
DLG1 discs, large homolog 1 (Drosophila) 0.0345332
CKAP5 cytoskeleton associated protein 5 0.032986
FRMD5 FERM domain containing 5 0.0326518
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0325808
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0325591
OGA O-GlcNAcase 0.0325577
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 0.0325506
AFDN afadin, adherens junction formation factor 0.0324024
RBM39 RNA binding motif protein 39 0.0319919
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 0.0317414
ATXN1 ataxin 1 0.0316711
XRN1 5'-3' exoribonuclease 1 0.0312864
ANKS1B ankyrin repeat and sterile alpha motif domain containing 1B 0.0312364
SMYD3 SET and MYND domain containing 3 0.0308899
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0306723
LRRC7 leucine rich repeat containing 7 0.0306189
SMAD3 SMAD family member 3 0.0305329
NHS Nance-Horan syndrome (congenital cataracts and dental anomalies) 0.030459
TNIP1 TNFAIP3 interacting protein 1 0.0304336
PKM pyruvate kinase, muscle 0.0296623
UGCG UDP-glucose ceramide glucosyltransferase 0.0295517
AHNAK AHNAK nucleoprotein 0.0295059
ANXA5 annexin A5 0.0292881
PRKN parkin RBR E3 ubiquitin protein ligase 0.0292761

decreased expression

Symbol Name Standardized Value
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.100244
VEGFA vascular endothelial growth factor A -0.0617662
INTS6 integrator complex subunit 6 -0.0537039
HMGA2 high mobility group AT-hook 2 -0.0518612
FTL ferritin, light polypeptide -0.0505919
FTH1 ferritin, heavy polypeptide 1 -0.0467555
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0456961
IGFBP3 insulin-like growth factor binding protein 3 -0.0421611
VIM vimentin -0.0404516
AFF3 AF4/FMR2 family, member 3 -0.0378012
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0375206
CDH13 cadherin 13 -0.0374563
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 -0.0362998
TMSB10 thymosin beta 10 -0.0352322
NDRG1 N-myc downstream regulated 1 -0.0320744
RAB7A RAB7A, member RAS oncogene family -0.0311076
RPS12 ribosomal protein S12 -0.0307813
RPL35A ribosomal protein L35a -0.0300436
COL5A1 collagen, type V, alpha 1 -0.0293941
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0293545
TPT1 tumor protein, translationally-controlled 1 -0.0283183
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 -0.0281763
RPL23 ribosomal protein L23 -0.027131
ASPH aspartate beta-hydroxylase -0.026974
RBCK1 RanBP-type and C3HC4-type zinc finger containing 1 -0.026835
RPLP2 ribosomal protein, large, P2 -0.0264084
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0263412
RPS19 ribosomal protein S19 -0.0256708
TMEM132D transmembrane protein 132D -0.0252892
RPL9 ribosomal protein L9 -0.0250092
ACTG1 actin gamma 1 -0.0241927
RPS8 ribosomal protein S8 -0.0235864
ZCCHC7 zinc finger, CCHC domain containing 7 -0.0225971
SAMD3 sterile alpha motif domain containing 3 -0.0219886
PAPPA pregnancy-associated plasma protein A, pappalysin 1 -0.0215402
CTBP2 C-terminal binding protein 2 -0.0213426
RND3 Rho family GTPase 3 -0.0212139
RPS13 ribosomal protein S13 -0.0199112
RPLP1 ribosomal protein, large, P1 -0.0198865
RPL36A ribosomal protein L36a -0.0197361
TBCA tubulin folding cofactor A -0.0197325
DDIT3 DNA-damage-inducible transcript 3 -0.0195792
RPS23 ribosomal protein S23 -0.0193251
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 -0.0193115
EEF2 eukaryotic translation elongation factor 2 -0.0188864
PDLIM5 PDZ and LIM domain 5 -0.0184719
ENO2 enolase 2 (gamma, neuronal) -0.0184209
TIMP2 TIMP metallopeptidase inhibitor 2 -0.0183745
RPL26 ribosomal protein L26 -0.0179003
RPL7A ribosomal protein L7a -0.0175382
RPL28 ribosomal protein L28 -0.0174632
COL6A2 collagen, type VI, alpha 2 -0.0173554
HMGA1 high mobility group AT-hook 1 -0.0171679
RPL35 ribosomal protein L35 -0.0170294
SHISA5 shisa family member 5 -0.016916
PPP1R18 protein phosphatase 1, regulatory subunit 18 -0.0167669
CALR calreticulin -0.0167593
EIF2S2 eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa -0.0164832
RPL37A ribosomal protein L37a -0.0164451
RPS27 ribosomal protein S27 -0.016296
KDM4C lysine (K)-specific demethylase 4C -0.0157691
AEBP2 AE binding protein 2 -0.0157654
KLHL29 kelch-like family member 29 -0.0154598
EFNA5 ephrin-A5 -0.0151925
RPS3 ribosomal protein S3 -0.0151585
PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 -0.0150603
TUT7 terminal uridylyl transferase 7 -0.015009
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase -0.0149595
RPL31 ribosomal protein L31 -0.0149546
ATP11C ATPase, class VI, type 11C -0.014757
ERN1 endoplasmic reticulum to nucleus signaling 1 -0.0147458
SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A -0.0147092
DENND1A DENN/MADD domain containing 1A -0.0146779
KDM4B lysine (K)-specific demethylase 4B -0.0145878
RPS10 ribosomal protein S10 -0.0145371
PPP1R10 protein phosphatase 1, regulatory subunit 10 -0.0145219
RPS14 ribosomal protein S14 -0.0144004
SCAPER S-phase cyclin A-associated protein in the ER -0.0143971
CUX1 cut-like homeobox 1 -0.014332
ARL15 ADP-ribosylation factor-like 15 -0.0142329
MBD5 methyl-CpG binding domain protein 5 -0.0141998
RPL5 ribosomal protein L5 -0.0141532
TRIP11 thyroid hormone receptor interactor 11 -0.0139012
LAMC1 laminin, gamma 1 (formerly LAMB2) -0.0137688
FRMPD4 FERM and PDZ domain containing 4 -0.0137335
RPL12 ribosomal protein L12 -0.0136998
RPS6 ribosomal protein S6 -0.0136203
RPL36 ribosomal protein L36 -0.0135498
CCND1 cyclin D1 -0.0135405
S100A9 S100 calcium binding protein A9 -0.0134825
USP53 ubiquitin specific peptidase 53 -0.0134004
VAC14 Vac14 homolog (S. cerevisiae) -0.0133049
WDR27 WD repeat domain 27 -0.0132564
UBASH3B ubiquitin associated and SH3 domain containing B -0.0132364
RPL11 ribosomal protein L11 -0.0132083
ZFPM2 zinc finger protein, FOG family member 2 -0.0131908
IRS2 insulin receptor substrate 2 -0.0131778
STAU2 staufen double-stranded RNA binding protein 2 -0.0131165
SPDYA speedy/RINGO cell cycle regulator family member A -0.0130961
FBXL7 F-box and leucine-rich repeat protein 7 -0.0130462