Simotinib_SW 1271 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Simotinib perturbation in SW 1271 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Simotinib_SW 1271 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0984675
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0780954
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0716372
SET SET nuclear proto-oncogene 0.06109
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0585095
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0563866
BIRC6 baculoviral IAP repeat containing 6 0.0539482
GOLGA4 golgin A4 0.0521461
RORA RAR-related orphan receptor A 0.049402
FMNL2 formin-like 2 0.0486989
NUP58 nucleoporin 58 0.0471175
PCBP2 poly(rC) binding protein 2 0.046225
PRKD1 protein kinase D1 0.045612
YAP1 Yes-associated protein 1 0.0447085
NIPBL Nipped-B homolog (Drosophila) 0.0443997
GNAS GNAS complex locus 0.042152
GLS2 glutaminase 2 (liver, mitochondrial) 0.0416919
SMYD3 SET and MYND domain containing 3 0.0409479
RPS20 ribosomal protein S20 0.0407267
RBM39 RNA binding motif protein 39 0.0404955
GPATCH2L G patch domain containing 2-like 0.0403959
BRD2 bromodomain containing 2 0.0402779
UBE2K ubiquitin-conjugating enzyme E2K 0.0400813
TOP1 topoisomerase (DNA) I 0.0398318
ZFAND6 zinc finger, AN1-type domain 6 0.039082
NGLY1 N-glycanase 1 0.0390632
NPTN neuroplastin 0.0384456
TNPO1 transportin 1 0.0380332
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0365793
TMBIM6 transmembrane BAX inhibitor motif containing 6 0.0364664
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.0357065
IARS1 isoleucyl-tRNA synthetase 1 0.0356808
SF3B1 splicing factor 3b, subunit 1, 155kDa 0.0356296
CDCP1 CUB domain containing protein 1 0.0354624
HJURP Holliday junction recognition protein 0.0351832
SNRNP200 small nuclear ribonucleoprotein 200kDa (U5) 0.0348313
TRPC4AP transient receptor potential cation channel, subfamily C, member 4 associated protein 0.0348009
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0346416
NFE2L2 nuclear factor, erythroid 2-like 2 0.0346287
NKTR natural killer cell triggering receptor 0.0340413
TBC1D15 TBC1 domain family, member 15 0.0332241
HMMR hyaluronan-mediated motility receptor (RHAMM) 0.0328389
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0327166
RPLP1 ribosomal protein, large, P1 0.0323063
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0321835
UGCG UDP-glucose ceramide glucosyltransferase 0.0320565
SYNGAP1 synaptic Ras GTPase activating protein 1 0.0320402
CCNH cyclin H 0.0316709
BAZ1A bromodomain adjacent to zinc finger domain, 1A 0.030988
PUM2 pumilio RNA-binding family member 2 0.0308995
HM13 histocompatibility (minor) 13 0.0300367
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0299489
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0297633
PRELID2 PRELI domain containing 2 0.0296712
TLK1 tousled-like kinase 1 0.0294893
XRN2 5'-3' exoribonuclease 2 0.0293835
PRPF4B pre-mRNA processing factor 4B 0.0293161
TOP2B topoisomerase (DNA) II beta 180kDa 0.0293008
ZBTB10 zinc finger and BTB domain containing 10 0.0292078
YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma 0.0291277
PRKCA protein kinase C, alpha 0.0287658
RPL4 ribosomal protein L4 0.0284534
PKM pyruvate kinase, muscle 0.0284282
LHFPL6 LHFPL tetraspan subfamily member 6 0.0284116
ATXN1 ataxin 1 0.0283294
RPL23 ribosomal protein L23 0.0281932
VPS13B vacuolar protein sorting 13 homolog B (yeast) 0.0280068
ENO1 enolase 1, (alpha) 0.0279434
ATP13A3 ATPase type 13A3 0.0277377
AP2B1 adaptor-related protein complex 2, beta 1 subunit 0.0276132
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 0.0275971
PEAK1 pseudopodium-enriched atypical kinase 1 0.0272094
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.0272069
BUB1 BUB1 mitotic checkpoint serine/threonine kinase 0.0271341
ANKRD36 ankyrin repeat domain 36 0.0270685
GOLGB1 golgin B1 0.0269227
YLPM1 YLP motif containing 1 0.0268947
SMAP1 small ArfGAP 1 0.026765
BZW1 basic leucine zipper and W2 domains 1 0.0266078
SREK1 splicing regulatory glutamine/lysine-rich protein 1 0.0264744
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0263923
TENT2 terminal nucleotidyltransferase 2 0.0263442
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0262128
PPP2CA protein phosphatase 2, catalytic subunit, alpha isozyme 0.0261563
SRP54 signal recognition particle 54kDa 0.0261423
RPS3 ribosomal protein S3 0.0260721
NAP1L1 nucleosome assembly protein 1-like 1 0.0260538
RBM5 RNA binding motif protein 5 0.0258468
AKAP12 A kinase (PRKA) anchor protein 12 0.0258058
NBAS neuroblastoma amplified sequence 0.0254851
RAB7A RAB7A, member RAS oncogene family 0.0254591
COLEC11 collectin sub-family member 11 0.025446
PDE4D phosphodiesterase 4D, cAMP-specific 0.0254181
PTGES3 prostaglandin E synthase 3 (cytosolic) 0.025283
TRA2A transformer 2 alpha homolog (Drosophila) 0.0251724
LDHB lactate dehydrogenase B 0.0250973
NOP58 NOP58 ribonucleoprotein 0.0249929
PPP3R1 protein phosphatase 3, regulatory subunit B, alpha 0.0248693
SEC23A Sec23 homolog A (S. cerevisiae) 0.0247542
RPN2 ribophorin II 0.0247159

decreased expression

Symbol Name Standardized Value
IGFBP3 insulin-like growth factor binding protein 3 -0.0947066
PTMA prothymosin, alpha -0.0781657
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0709806
CD44 CD44 molecule (Indian blood group) -0.0692762
PHLDB2 pleckstrin homology-like domain, family B, member 2 -0.059908
BRAF B-Raf proto-oncogene, serine/threonine kinase -0.0524091
FTH1 ferritin, heavy polypeptide 1 -0.0518216
LPP LIM domain containing preferred translocation partner in lipoma -0.0472146
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -0.046478
IGF2 insulin-like growth factor 2 -0.0446586
NF1 neurofibromin 1 -0.0436853
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0412159
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0407416
SOD2 superoxide dismutase 2, mitochondrial -0.0399809
DERA deoxyribose-phosphate aldolase (putative) -0.0398028
RIGI RNA sensor RIG-I -0.0388191
GPATCH8 G patch domain containing 8 -0.0383297
HILPDA hypoxia inducible lipid droplet-associated -0.0377104
FLNB filamin B, beta -0.0374477
CLIP1 CAP-GLY domain containing linker protein 1 -0.0362862
PRRC2C proline-rich coiled-coil 2C -0.0356796
AKAP13 A kinase (PRKA) anchor protein 13 -0.0347356
HMGA2 high mobility group AT-hook 2 -0.0338277
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 -0.0335084
SH3KBP1 SH3-domain kinase binding protein 1 -0.0322051
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) -0.031794
IQGAP1 IQ motif containing GTPase activating protein 1 -0.0316828
MYO9B myosin IXB -0.0307549
SDC4 syndecan 4 -0.0307425
TTC17 tetratricopeptide repeat domain 17 -0.030511
CUX1 cut-like homeobox 1 -0.0301401
LDHA lactate dehydrogenase A -0.0300577
ESYT2 extended synaptotagmin-like protein 2 -0.030048
MAP3K20 mitogen-activated protein kinase kinase kinase 20 -0.0289771
RNF213 ring finger protein 213 -0.0287026
UTRN utrophin -0.0280068
TMEM158 transmembrane protein 158 (gene/pseudogene) -0.0279593
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 -0.0278986
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0278021
GPC6 glypican 6 -0.0277012
CAPRIN2 caprin family member 2 -0.0275252
IFIH1 interferon induced with helicase C domain 1 -0.0273487
CSPP1 centrosome and spindle pole associated protein 1 -0.0271674
SIPA1L3 signal-induced proliferation-associated 1 like 3 -0.0262822
LMO7 LIM domain 7 -0.0257541
SLC36A4 solute carrier family 36 (proton/amino acid symporter), member 4 -0.0254945
DARS1 aspartyl-tRNA synthetase 1 -0.025437
FAM193A family with sequence similarity 193, member A -0.0254368
NAV3 neuron navigator 3 -0.0253394
MACF1 microtubule-actin crosslinking factor 1 -0.0251512
FRMD6 FERM domain containing 6 -0.024817
TXNRD1 thioredoxin reductase 1 -0.0247445
ARPC3 actin related protein 2/3 complex, subunit 3, 21kDa -0.0245897
ANKRD11 ankyrin repeat domain 11 -0.0245428
SPG7 spastic paraplegia 7 (pure and complicated autosomal recessive) -0.0244242
RIN2 Ras and Rab interactor 2 -0.0243756
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 -0.0242743
INTS6 integrator complex subunit 6 -0.0242256
SEC31A SEC31 homolog A (S. cerevisiae) -0.0240547
DENND5B DENN/MADD domain containing 5B -0.0239708
PDS5A PDS5 cohesin associated factor A -0.0239217
RAD50 RAD50 homolog (S. cerevisiae) -0.0238924
GCC2 GRIP and coiled-coil domain containing 2 -0.023814
AP3D1 adaptor-related protein complex 3, delta 1 subunit -0.023813
NBR1 neighbor of BRCA1 gene 1 -0.0235604
HDAC9 histone deacetylase 9 -0.0234656
GOLGA3 golgin A3 -0.0233262
STXBP5 syntaxin binding protein 5 (tomosyn) -0.0232907
GOSR2 golgi SNAP receptor complex member 2 -0.0228176
PACS1 phosphofurin acidic cluster sorting protein 1 -0.0227252
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 -0.0227016
CDK12 cyclin-dependent kinase 12 -0.0226124
AXL AXL receptor tyrosine kinase -0.0222766
SERPINB6 serpin peptidase inhibitor, clade B (ovalbumin), member 6 -0.0222759
PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 -0.0222453
DZIP1 DAZ interacting zinc finger protein 1 -0.0222247
KLC1 kinesin light chain 1 -0.0222198
CEP290 centrosomal protein 290kDa -0.0221649
TTLL10 tubulin tyrosine ligase-like family member 10 -0.0221024
PHIP pleckstrin homology domain interacting protein -0.0219819
HDAC4 histone deacetylase 4 -0.0219625
TTC28 tetratricopeptide repeat domain 28 -0.0218661
RAI14 retinoic acid induced 14 -0.0217026
ATM ATM serine/threonine kinase -0.0216607
NAMPT nicotinamide phosphoribosyltransferase -0.0214332
NXN nucleoredoxin -0.021382
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 -0.0212343
RAB2A RAB2A, member RAS oncogene family -0.0211601
UBE2H ubiquitin-conjugating enzyme E2H -0.0211133
PRKN parkin RBR E3 ubiquitin protein ligase -0.021095
ZRANB3 zinc finger, RAN-binding domain containing 3 -0.0208165
SEMA4B sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B -0.0207781
NCOR1 nuclear receptor corepressor 1 -0.0206802
DNAJC21 DnaJ (Hsp40) homolog, subfamily C, member 21 -0.0206118
CDK8 cyclin-dependent kinase 8 -0.0205007
CRK v-crk avian sarcoma virus CT10 oncogene homolog -0.0204344
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) -0.0203661
TRAPPC9 trafficking protein particle complex 9 -0.0203159
FAM222B family with sequence similarity 222, member B -0.0202733
SBNO1 strawberry notch homolog 1 (Drosophila) -0.0202182