Sinomenine_A-427 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Sinomenine perturbation in A-427 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Sinomenine_A-427 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.18421
TPM3 tropomyosin 3 0.08334
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 0.0796108
MMP12 matrix metallopeptidase 12 0.0770085
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0753648
VMP1 vacuole membrane protein 1 0.0739562
RTN4 reticulon 4 0.0696927
ERRFI1 ERBB receptor feedback inhibitor 1 0.0666073
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0664292
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 0.0623869
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0505213
BRD2 bromodomain containing 2 0.0475278
AKAP12 A kinase (PRKA) anchor protein 12 0.0472663
RPL3 ribosomal protein L3 0.0437957
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0436881
ZBTB20 zinc finger and BTB domain containing 20 0.0436489
MARCHF4 membrane associated ring-CH-type finger 4 0.0435525
USP34 ubiquitin specific peptidase 34 0.0432616
EZR ezrin 0.0430164
ZNF638 zinc finger protein 638 0.0417136
JMJD1C jumonji domain containing 1C 0.0415494
KTN1 kinectin 1 (kinesin receptor) 0.0404445
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.0401289
OSBPL8 oxysterol binding protein-like 8 0.0389735
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0389571
EXOC6B exocyst complex component 6B 0.0385904
CCDC88A coiled-coil domain containing 88A 0.0385242
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.037731
SRRM1 serine/arginine repetitive matrix 1 0.0375721
RRM2 ribonucleotide reductase M2 0.0368026
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0367473
PCM1 pericentriolar material 1 0.0365591
APLP2 amyloid beta (A4) precursor-like protein 2 0.03621
BIRC6 baculoviral IAP repeat containing 6 0.0360471
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.0359242
KPNA4 karyopherin alpha 4 (importin alpha 3) 0.0359192
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0357989
SON SON DNA binding protein 0.0357949
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0355757
RABGAP1L RAB GTPase activating protein 1-like 0.0345121
ZNF148 zinc finger protein 148 0.0343435
PPP1R12A protein phosphatase 1, regulatory subunit 12A 0.0340068
ZNF292 zinc finger protein 292 0.0337306
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0331806
CSNK1A1 casein kinase 1, alpha 1 0.0331105
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0324848
TTC3 tetratricopeptide repeat domain 3 0.0322702
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0321524
EIF4A2 eukaryotic translation initiation factor 4A2 0.0320859
PHC3 polyhomeotic homolog 3 (Drosophila) 0.0320258
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 0.0318454
SERPINB2 serpin peptidase inhibitor, clade B (ovalbumin), member 2 0.031538
ERBIN erbb2 interacting protein 0.0311976
NF1 neurofibromin 1 0.0308442
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0307748
AKT3 v-akt murine thymoma viral oncogene homolog 3 0.030547
PIP5K1A phosphatidylinositol-4-phosphate 5-kinase, type I, alpha 0.0301202
NEBL nebulette 0.0300878
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0300659
RSF1 remodeling and spacing factor 1 0.0300268
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0299931
GJA1 gap junction protein, alpha 1, 43kDa 0.0299326
SAMD4A sterile alpha motif domain containing 4A 0.0294898
XPO1 exportin 1 0.0293935
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.0285198
VPS13B vacuolar protein sorting 13 homolog B (yeast) 0.0284262
RUNX1 runt-related transcription factor 1 0.0283274
SPATS2 spermatogenesis associated, serine-rich 2 0.0281228
LGALS12 lectin, galactoside-binding, soluble, 12 0.0278559
OGA O-GlcNAcase 0.0278268
LUC7L3 LUC7-like 3 (S. cerevisiae) 0.0277891
ATP11A ATPase, class VI, type 11A 0.0277643
PSME4 proteasome (prosome, macropain) activator subunit 4 0.0276093
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0274221
RERE arginine-glutamic acid dipeptide (RE) repeats 0.0266276
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.0266169
AFF4 AF4/FMR2 family, member 4 0.0265018
PRRC2C proline-rich coiled-coil 2C 0.0262684
PHF21A PHD finger protein 21A 0.0262633
TXNRD1 thioredoxin reductase 1 0.0261602
CAMSAP2 calmodulin regulated spectrin-associated protein family, member 2 0.0258753
WWOX WW domain containing oxidoreductase 0.0258283
TJP1 tight junction protein 1 0.0256634
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 0.0256338
FNIP1 folliculin interacting protein 1 0.0255265
NALF1 NALCN channel auxiliary factor 1 0.0253935
ARFGEF3 ARFGEF family member 3 0.0252335
SERTAD2 SERTA domain containing 2 0.0250904
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0249878
POLR2B polymerase (RNA) II (DNA directed) polypeptide B, 140kDa 0.0249112
ANK2 ankyrin 2, neuronal 0.0249032
GSK3B glycogen synthase kinase 3 beta 0.0248264
TENM3 teneurin transmembrane protein 3 0.0248014
CCN2 cellular communication network factor 2 0.0247952
SRRM2 serine/arginine repetitive matrix 2 0.024722
EFNA5 ephrin-A5 0.0246098
KDM2A lysine (K)-specific demethylase 2A 0.0245259
ARB2A ARB2 cotranscriptional regulator A 0.024522
SPRED2 sprouty-related, EVH1 domain containing 2 0.0242817
BPTF bromodomain PHD finger transcription factor 0.0241276

decreased expression

Symbol Name Standardized Value
TMSB10 thymosin beta 10 -0.153676
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.150774
NLGN1 neuroligin 1 -0.113716
PDE4D phosphodiesterase 4D, cAMP-specific -0.0789414
RPL35A ribosomal protein L35a -0.0728813
NHSL1 NHS-like 1 -0.0695642
PTMA prothymosin, alpha -0.0692706
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0579886
STARD4 StAR-related lipid transfer (START) domain containing 4 -0.0570227
EHBP1 EH domain binding protein 1 -0.0559157
CUBN cubilin (intrinsic factor-cobalamin receptor) -0.0544237
ACTG1 actin gamma 1 -0.0539157
GNAS GNAS complex locus -0.0535627
RPS24 ribosomal protein S24 -0.0522847
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0506973
ATP5F1B ATP synthase F1 subunit beta -0.0502899
TPT1 tumor protein, translationally-controlled 1 -0.0499447
ZNF804A zinc finger protein 804A -0.0493085
MYL12B myosin, light chain 12B, regulatory -0.0489891
HMGA2 high mobility group AT-hook 2 -0.0477537
ITGBL1 integrin, beta-like 1 (with EGF-like repeat domains) -0.0466157
IFIH1 interferon induced with helicase C domain 1 -0.0453429
TM4SF1 transmembrane 4 L six family member 1 -0.044812
ALDH1A1 aldehyde dehydrogenase 1 family, member A1 -0.0441573
MGAT4C MGAT4 family, member C -0.0419475
RASAL2 RAS protein activator like 2 -0.0407893
RPL23 ribosomal protein L23 -0.0407673
RPL34 ribosomal protein L34 -0.0404625
S100A6 S100 calcium binding protein A6 -0.0396993
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.0395497
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0383345
TUBB tubulin, beta class I -0.0378809
RPL26 ribosomal protein L26 -0.0372869
CMIP c-Maf inducing protein -0.0364514
NR2F1 nuclear receptor subfamily 2, group F, member 1 -0.0347181
KLF6 Kruppel-like factor 6 -0.0346862
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0337876
KPNB1 karyopherin (importin) beta 1 -0.0336102
EGR1 early growth response 1 -0.0322348
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0320169
LMO7 LIM domain 7 -0.0318585
NR5A2 nuclear receptor subfamily 5, group A, member 2 -0.0317073
RPL31 ribosomal protein L31 -0.0314078
RPLP1 ribosomal protein, large, P1 -0.0311748
CLDN1 claudin 1 -0.029765
PCDH9 protocadherin 9 -0.0294576
SYT1 synaptotagmin I -0.029449
VTI1A vesicle transport through interaction with t-SNAREs 1A -0.0291963
LRRTM4 leucine rich repeat transmembrane neuronal 4 -0.0283146
S100A10 S100 calcium binding protein A10 -0.0280272
EPHA5 EPH receptor A5 -0.0279974
ADGRG6 adhesion G protein-coupled receptor G6 -0.0278696
RPL19 ribosomal protein L19 -0.02786
HSPB1 heat shock 27kDa protein 1 -0.0278476
BCHE butyrylcholinesterase -0.026728
RPL38 ribosomal protein L38 -0.0263202
HNRNPD heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) -0.026157
NSD2 nuclear receptor binding SET domain protein 2 -0.0258019
FAM110C family with sequence similarity 110, member C -0.0254942
ANKRD12 ankyrin repeat domain 12 -0.025439
RPLP0 ribosomal protein, large, P0 -0.0252808
CXADR coxsackie virus and adenovirus receptor -0.0247678
ZNF217 zinc finger protein 217 -0.0244971
DLC1 DLC1 Rho GTPase activating protein -0.0244332
RPS20 ribosomal protein S20 -0.0243606
HNRNPAB heterogeneous nuclear ribonucleoprotein A/B -0.0241849
FTL ferritin, light polypeptide -0.0238681
RPL9 ribosomal protein L9 -0.02375
KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 -0.0225823
CSMD3 CUB and Sushi multiple domains 3 -0.0224991
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0223781
FSTL5 follistatin-like 5 -0.0222031
GASK1B golgi associated kinase 1B -0.0217486
MARCHF6 membrane associated ring-CH-type finger 6 -0.0215508
CBX3 chromobox homolog 3 -0.0213486
MTAP methylthioadenosine phosphorylase -0.0210563
AHNAK AHNAK nucleoprotein -0.0210236
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0209097
NABP1 nucleic acid binding protein 1 -0.0208746
DNAH14 dynein, axonemal, heavy chain 14 -0.0206638
RPLP2 ribosomal protein, large, P2 -0.0206119
SMC4 structural maintenance of chromosomes 4 -0.0204334
TPI1 triosephosphate isomerase 1 -0.0203702
RAB10 RAB10, member RAS oncogene family -0.0203021
AHR aryl hydrocarbon receptor -0.0203001
CANX calnexin -0.020208
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon -0.020175
KHSRP KH-type splicing regulatory protein -0.0201525
CNRIP1 cannabinoid receptor interacting protein 1 -0.0200332
TRAF3 TNF receptor-associated factor 3 -0.0199958
ARF1 ADP-ribosylation factor 1 -0.0199087
MKI67 marker of proliferation Ki-67 -0.0197613
PARK7 parkinson protein 7 -0.0196675
VCL vinculin -0.0194562
RPS21 ribosomal protein S21 -0.0192319
NPC1 Niemann-Pick disease, type C1 -0.0189636
CCT8 chaperonin containing TCP1, subunit 8 (theta) -0.0188635
RBM39 RNA binding motif protein 39 -0.0187046
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 -0.0185504
CUX1 cut-like homeobox 1 -0.0184823