Sinomenine_NCI-H2030 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Sinomenine perturbation in NCI-H2030 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Sinomenine_NCI-H2030 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
PDE4D phosphodiesterase 4D, cAMP-specific 0.0914474
PM20D1 peptidase M20 domain containing 1 0.0705789
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0525336
ELL2 elongation factor, RNA polymerase II, 2 0.0504729
AKAP12 A kinase (PRKA) anchor protein 12 0.0480075
SMOC1 SPARC related modular calcium binding 1 0.046677
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0407842
DOCK4 dedicator of cytokinesis 4 0.0382914
ZSWIM6 zinc finger, SWIM-type containing 6 0.0371922
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) 0.0367487
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0363605
RICTOR RPTOR independent companion of MTOR, complex 2 0.0352869
ERRFI1 ERBB receptor feedback inhibitor 1 0.0348002
KYNU kynureninase 0.0329729
RBM39 RNA binding motif protein 39 0.031496
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0311718
FNDC3B fibronectin type III domain containing 3B 0.0309218
PDLIM5 PDZ and LIM domain 5 0.0298142
COPA coatomer protein complex, subunit alpha 0.0293534
EGFR epidermal growth factor receptor 0.0281205
WAC WW domain containing adaptor with coiled-coil 0.0276994
DOCK5 dedicator of cytokinesis 5 0.0264308
KMT2C lysine (K)-specific methyltransferase 2C 0.025966
GOLGA4 golgin A4 0.0251693
TRA2A transformer 2 alpha homolog (Drosophila) 0.0244671
ZFAND3 zinc finger, AN1-type domain 3 0.0240505
ATF6 activating transcription factor 6 0.0236176
ITCH itchy E3 ubiquitin protein ligase 0.0232128
EXT1 exostosin glycosyltransferase 1 0.0229825
BAIAP2L1 BAI1-associated protein 2-like 1 0.0228028
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) 0.0227706
TRIO trio Rho guanine nucleotide exchange factor 0.0224071
UGCG UDP-glucose ceramide glucosyltransferase 0.021815
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.0215147
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like 0.0212876
PHLDB2 pleckstrin homology-like domain, family B, member 2 0.0211241
SETD5 SET domain containing 5 0.0211155
CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 0.02104
BRD2 bromodomain containing 2 0.0205599
CUX1 cut-like homeobox 1 0.020289
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) 0.0202794
NPAS2 neuronal PAS domain protein 2 0.0199551
NF1 neurofibromin 1 0.0198043
STK17A serine/threonine kinase 17a 0.0196223
SMAD2 SMAD family member 2 0.0195605
NUMB numb homolog (Drosophila) 0.0193724
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 0.0191909
VCL vinculin 0.0191097
HELZ helicase with zinc finger 0.0187977
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 0.0186576
IGFBP3 insulin-like growth factor binding protein 3 0.0184238
TTC28 tetratricopeptide repeat domain 28 0.018191
ATXN1 ataxin 1 0.0181513
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) 0.0181431
RAB7A RAB7A, member RAS oncogene family 0.0180962
LARP4B La ribonucleoprotein domain family, member 4B 0.0179512
BASP1 brain abundant, membrane attached signal protein 1 0.0177857
MYO1E myosin IE 0.017675
USP36 ubiquitin specific peptidase 36 0.0176412
FMNL2 formin-like 2 0.0173823
RAB1A RAB1A, member RAS oncogene family 0.017351
BZW2 basic leucine zipper and W2 domains 2 0.0171824
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0171531
CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 0.0169739
USP47 ubiquitin specific peptidase 47 0.016808
DNAJC1 DnaJ (Hsp40) homolog, subfamily C, member 1 0.0167941
PDE10A phosphodiesterase 10A 0.0167693
NRG1 neuregulin 1 0.0166838
VRK2 vaccinia related kinase 2 0.0165742
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa 0.0162986
BCAR3 breast cancer anti-estrogen resistance 3 0.0161407
RBM6 RNA binding motif protein 6 0.0160605
PYGL phosphorylase, glycogen, liver 0.0160365
ARHGAP26 Rho GTPase activating protein 26 0.0160001
ARID4B AT rich interactive domain 4B (RBP1-like) 0.0158733
SPIDR scaffolding protein involved in DNA repair 0.0157986
EPAS1 endothelial PAS domain protein 1 0.0156231
NDRG1 N-myc downstream regulated 1 0.0156162
SH3KBP1 SH3-domain kinase binding protein 1 0.0155188
LPP LIM domain containing preferred translocation partner in lipoma 0.0154783
BMP6 bone morphogenetic protein 6 0.0154772
PTPRM protein tyrosine phosphatase, receptor type, M 0.0154256
DYM dymeclin 0.0149069
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0148656
PCNX4 pecanex 4 0.014844
KAT6B K(lysine) acetyltransferase 6B 0.014808
HLA-B major histocompatibility complex, class I, B 0.0147824
UBASH3B ubiquitin associated and SH3 domain containing B 0.0147732
SIPA1L1 signal-induced proliferation-associated 1 like 1 0.0147329
MRTFA myocardin related transcription factor A 0.0146431
TTC3 tetratricopeptide repeat domain 3 0.0146304
KDM5B lysine (K)-specific demethylase 5B 0.0145982
SENP6 SUMO1/sentrin specific peptidase 6 0.0145792
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0144684
MAP7 microtubule-associated protein 7 0.0144302
UMAD1 UBAP1-MVB12-associated (UMA) domain containing 1 0.0142058
KTN1 kinectin 1 (kinesin receptor) 0.0141294
MYO1D myosin ID 0.0140244
DLG1 discs, large homolog 1 (Drosophila) 0.0139713
CLIP1 CAP-GLY domain containing linker protein 1 0.01397

decreased expression

Symbol Name Standardized Value
MT2A metallothionein 2A -0.157374
VIM vimentin -0.131873
TMSB10 thymosin beta 10 -0.116683
GRAMD1B GRAM domain containing 1B -0.111133
RPL23 ribosomal protein L23 -0.10512
TM4SF1 transmembrane 4 L six family member 1 -0.103719
RPS27A ribosomal protein S27a -0.102082
PTMA prothymosin, alpha -0.0889024
FGB fibrinogen beta chain -0.0869595
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0848502
TXNRD1 thioredoxin reductase 1 -0.0828643
UBC ubiquitin C -0.0781046
EEF2 eukaryotic translation elongation factor 2 -0.0773816
FTL ferritin, light polypeptide -0.0695938
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0685439
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0620444
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0605192
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0533332
TFPI2 tissue factor pathway inhibitor 2 -0.0524081
ENO1 enolase 1, (alpha) -0.0495444
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0494585
PKM pyruvate kinase, muscle -0.0479944
ASPH aspartate beta-hydroxylase -0.0467471
RPL19 ribosomal protein L19 -0.0442088
POTEF POTE ankyrin domain family, member F -0.041826
TPM3 tropomyosin 3 -0.0406592
PDIA6 protein disulfide isomerase family A, member 6 -0.0398333
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0394613
AP2B1 adaptor-related protein complex 2, beta 1 subunit -0.0352172
SPTBN1 spectrin, beta, non-erythrocytic 1 -0.0351245
EEF1G eukaryotic translation elongation factor 1 gamma -0.0347881
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0342281
NQO1 NAD(P)H dehydrogenase, quinone 1 -0.0337148
RPS12 ribosomal protein S12 -0.0325543
PCBP2 poly(rC) binding protein 2 -0.0323959
S100A6 S100 calcium binding protein A6 -0.0321509
RPS3 ribosomal protein S3 -0.0311412
XRCC5 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) -0.0291473
PRKDC protein kinase, DNA-activated, catalytic polypeptide -0.0286036
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 -0.028587
BIRC3 baculoviral IAP repeat containing 3 -0.0280517
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon -0.0271103
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 -0.0269924
LANCL1 LanC lantibiotic synthetase component C-like 1 (bacterial) -0.0266536
FLNA filamin A, alpha -0.0263034
CALR calreticulin -0.0260632
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.0259075
RPS29 ribosomal protein S29 -0.0258971
RTN4 reticulon 4 -0.0255258
HDGF hepatoma-derived growth factor -0.0249874
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) -0.0247565
MKI67 marker of proliferation Ki-67 -0.0245946
RAD21 RAD21 homolog (S. pombe) -0.0240283
CCT5 chaperonin containing TCP1, subunit 5 (epsilon) -0.0239078
RPL8 ribosomal protein L8 -0.0237787
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) -0.0237437
NAMPT nicotinamide phosphoribosyltransferase -0.0236793
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0236267
AHNAK AHNAK nucleoprotein -0.0235711
CFLAR CASP8 and FADD-like apoptosis regulator -0.0234465
RPL26 ribosomal protein L26 -0.0233766
HSPA8 heat shock 70kDa protein 8 -0.0233501
YBX1 Y box binding protein 1 -0.0233235
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle -0.0228203
MCL1 myeloid cell leukemia 1 -0.0224881
SRP14 signal recognition particle 14kDa (homologous Alu RNA binding protein) -0.0224073
AREG amphiregulin -0.0223984
RPL37A ribosomal protein L37a -0.0223162
RPS8 ribosomal protein S8 -0.0221862
THBS1 thrombospondin 1 -0.0221371
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 -0.0220789
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0216088
LMNA lamin A/C -0.0212564
RACK1 receptor for activated C kinase 1 -0.0211309
RPL36 ribosomal protein L36 -0.0210935
SLC38A1 solute carrier family 38, member 1 -0.0208998
SFPQ splicing factor proline/glutamine-rich -0.0208884
RPL15 ribosomal protein L15 -0.0208178
RPL31 ribosomal protein L31 -0.0207682
RPL7 ribosomal protein L7 -0.0207213
RPLP1 ribosomal protein, large, P1 -0.0205809
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 -0.0201921
RPL5 ribosomal protein L5 -0.0200778
CCT8 chaperonin containing TCP1, subunit 8 (theta) -0.0199345
RHOA ras homolog family member A -0.0199076
IER3 immediate early response 3 -0.0196038
SET SET nuclear proto-oncogene -0.0195589
RPS4Y1 ribosomal protein S4, Y-linked 1 -0.0194681
RPL4 ribosomal protein L4 -0.0192756
CENPF centromere protein F, 350/400kDa -0.019068
ANLN anillin, actin binding protein -0.0190455
DLGAP5 discs, large (Drosophila) homolog-associated protein 5 -0.0188543
MYH9 myosin, heavy chain 9, non-muscle -0.0187113
UPP1 uridine phosphorylase 1 -0.0186952
SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein -0.0186417
EIF4A1 eukaryotic translation initiation factor 4A1 -0.0185574
APP amyloid beta (A4) precursor protein -0.0184641
LDHB lactate dehydrogenase B -0.0184599
JUN jun proto-oncogene -0.0183834
HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 (2H9) -0.0183212