Sinomenine_NCI-H460 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Sinomenine perturbation in NCI-H460 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Sinomenine_NCI-H460 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
PM20D1 peptidase M20 domain containing 1 0.135433
DST dystonin 0.12687
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.115513
MAML3 mastermind-like 3 (Drosophila) 0.112689
KYNU kynureninase 0.0973925
EFNA5 ephrin-A5 0.0927091
PSD3 pleckstrin and Sec7 domain containing 3 0.069572
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 0.0627853
INTS6 integrator complex subunit 6 0.061237
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.060106
SMOC1 SPARC related modular calcium binding 1 0.0578173
DNER delta/notch-like EGF repeat containing 0.0571979
SMAD2 SMAD family member 2 0.0567673
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.0551651
PCBP3 poly(rC) binding protein 3 0.05478
RAD51B RAD51 paralog B 0.0534678
COL4A6 collagen, type IV, alpha 6 0.0529725
LIMCH1 LIM and calponin homology domains 1 0.0502515
PDE10A phosphodiesterase 10A 0.0495516
FMNL2 formin-like 2 0.0431185
ZSWIM6 zinc finger, SWIM-type containing 6 0.0413838
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0383404
AP1S3 adaptor-related protein complex 1, sigma 3 subunit 0.0376657
PTEN phosphatase and tensin homolog 0.0367083
EXOC4 exocyst complex component 4 0.0362423
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0362396
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) 0.0361974
HDAC4 histone deacetylase 4 0.0361587
FNIP1 folliculin interacting protein 1 0.0352267
AUTS2 autism susceptibility candidate 2 0.0342696
VCL vinculin 0.03418
MKLN1 muskelin 1, intracellular mediator containing kelch motifs 0.0338224
NPAS2 neuronal PAS domain protein 2 0.0335149
COL8A1 collagen, type VIII, alpha 1 0.0322815
MCL1 myeloid cell leukemia 1 0.0322313
CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 0.0318759
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) 0.0314312
MBD5 methyl-CpG binding domain protein 5 0.0311821
CUX1 cut-like homeobox 1 0.0300036
ASCC3 activating signal cointegrator 1 complex subunit 3 0.0294947
MACF1 microtubule-actin crosslinking factor 1 0.0279762
PRKCA protein kinase C, alpha 0.0267742
TOP1 topoisomerase (DNA) I 0.0264373
PDE7B phosphodiesterase 7B 0.0254532
RABGAP1L RAB GTPase activating protein 1-like 0.025143
ZCCHC7 zinc finger, CCHC domain containing 7 0.0237455
ATM ATM serine/threonine kinase 0.0236416
ADGRB3 adhesion G protein-coupled receptor B3 0.0229271
GPC6 glypican 6 0.0228021
SLC44A1 solute carrier family 44 (choline transporter), member 1 0.022446
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.0223901
MYPN myopalladin 0.0222997
OGDH oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 0.022197
EVA1C eva-1 homolog C (C. elegans) 0.0220693
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 0.022027
CLIP1 CAP-GLY domain containing linker protein 1 0.021978
ERC1 ELKS/RAB6-interacting/CAST family member 1 0.021859
ZNF638 zinc finger protein 638 0.0218223
CTBP2 C-terminal binding protein 2 0.0217588
COPA coatomer protein complex, subunit alpha 0.0215176
PTPRG protein tyrosine phosphatase, receptor type, G 0.0212571
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0212076
MT2A metallothionein 2A 0.0211749
N4BP2L2 NEDD4 binding protein 2-like 2 0.0211572
PRKN parkin RBR E3 ubiquitin protein ligase 0.0211393
PDIA4 protein disulfide isomerase family A, member 4 0.0210803
SDCCAG8 serologically defined colon cancer antigen 8 0.0209898
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 0.0204252
ATXN1 ataxin 1 0.0204136
NHS Nance-Horan syndrome (congenital cataracts and dental anomalies) 0.0204015
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0203698
IGFBP3 insulin-like growth factor binding protein 3 0.0202031
GDA guanine deaminase 0.0198412
FLRT2 fibronectin leucine rich transmembrane protein 2 0.0197514
KDM4C lysine (K)-specific demethylase 4C 0.019477
TRIP11 thyroid hormone receptor interactor 11 0.0194689
AEBP2 AE binding protein 2 0.0191462
SSH2 slingshot protein phosphatase 2 0.0190737
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 0.0189471
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.0189145
AKAP13 A kinase (PRKA) anchor protein 13 0.0187309
XKR6 XK, Kell blood group complex subunit-related family, member 6 0.0186229
DPYD dihydropyrimidine dehydrogenase 0.0184453
NRDC nardilysin convertase 0.0183656
GRAMD1B GRAM domain containing 1B 0.0182685
PLEKHA5 pleckstrin homology domain containing, family A member 5 0.0182043
CDK13 cyclin-dependent kinase 13 0.0178936
SH3KBP1 SH3-domain kinase binding protein 1 0.0178345
MON2 MON2 homolog (S. cerevisiae) 0.0177597
FNDC3B fibronectin type III domain containing 3B 0.0177018
TTC3 tetratricopeptide repeat domain 3 0.0175321
WWTR1 WW domain containing transcription regulator 1 0.0172897
DLGAP1 discs, large (Drosophila) homolog-associated protein 1 0.0169954
LPP LIM domain containing preferred translocation partner in lipoma 0.0169439
SNCA synuclein, alpha (non A4 component of amyloid precursor) 0.0168487
ARHGEF28 Rho guanine nucleotide exchange factor (GEF) 28 0.0164181
SLC35F3 solute carrier family 35, member F3 0.0163814
PBX1 pre-B-cell leukemia homeobox 1 0.0163255
GIGYF2 GRB10 interacting GYF protein 2 0.0162795
UTY ubiquitously transcribed tetratricopeptide repeat containing, Y-linked 0.0162785

decreased expression

Symbol Name Standardized Value
FN1 fibronectin 1 -0.23095
NAMPT nicotinamide phosphoribosyltransferase -0.139452
CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) -0.114283
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.102706
PTMA prothymosin, alpha -0.0913543
MYOF myoferlin -0.0853423
CDH13 cadherin 13 -0.0820636
TXNRD1 thioredoxin reductase 1 -0.0774148
P3H2 prolyl 3-hydroxylase 2 -0.0759956
TFPI2 tissue factor pathway inhibitor 2 -0.0758511
TM4SF1 transmembrane 4 L six family member 1 -0.0720706
DPP10 dipeptidyl-peptidase 10 (non-functional) -0.0706731
CXCL8 chemokine (C-X-C motif) ligand 8 -0.069736
CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 -0.0684133
CD109 CD109 molecule -0.0630449
NRCAM neuronal cell adhesion molecule -0.0575963
NEK7 NIMA-related kinase 7 -0.0567675
PDE4D phosphodiesterase 4D, cAMP-specific -0.0542528
ADGRD1 adhesion G protein-coupled receptor D1 -0.0529542
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 -0.0528212
TMSB10 thymosin beta 10 -0.052627
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.0526148
SOX4 SRY (sex determining region Y)-box 4 -0.0519943
RPLP1 ribosomal protein, large, P1 -0.0517286
PDE3A phosphodiesterase 3A, cGMP-inhibited -0.0507666
RPL35A ribosomal protein L35a -0.0502615
TGFBI transforming growth factor, beta-induced, 68kDa -0.0487762
VIM vimentin -0.0487274
EIF1 eukaryotic translation initiation factor 1 -0.0483704
LSAMP limbic system-associated membrane protein -0.0474641
RPS24 ribosomal protein S24 -0.047178
SPAG9 sperm associated antigen 9 -0.0469218
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0454034
SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 -0.0448385
NCOA7 nuclear receptor coactivator 7 -0.0443189
WARS1 tryptophanyl-tRNA synthetase 1 -0.0436964
TPT1 tumor protein, translationally-controlled 1 -0.0428959
RPS6 ribosomal protein S6 -0.0421946
RTN4 reticulon 4 -0.0418949
EZR ezrin -0.0418262
RPL26 ribosomal protein L26 -0.0415187
COL5A2 collagen, type V, alpha 2 -0.0414738
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 -0.0402868
FTH1 ferritin, heavy polypeptide 1 -0.0402372
UNC5D unc-5 homolog D (C. elegans) -0.0399855
RPL38 ribosomal protein L38 -0.0382691
DGKD diacylglycerol kinase, delta 130kDa -0.0380129
RGS2 regulator of G-protein signaling 2 -0.0370406
BASP1 brain abundant, membrane attached signal protein 1 -0.0368277
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0356624
PRSS23 protease, serine, 23 -0.035261
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0343625
TNPO1 transportin 1 -0.0342466
RPL12 ribosomal protein L12 -0.034154
TMX4 thioredoxin-related transmembrane protein 4 -0.0337235
ERC2 ELKS/RAB6-interacting/CAST family member 2 -0.0332956
FTL ferritin, light polypeptide -0.0331697
OASL 2'-5'-oligoadenylate synthetase-like -0.0331378
SERPINB2 serpin peptidase inhibitor, clade B (ovalbumin), member 2 -0.0323353
ASPH aspartate beta-hydroxylase -0.0321681
INHBA inhibin, beta A -0.0319719
ANXA5 annexin A5 -0.0319572
UGCG UDP-glucose ceramide glucosyltransferase -0.0318602
RPL31 ribosomal protein L31 -0.0317731
CCDC68 coiled-coil domain containing 68 -0.0317426
ANXA2 annexin A2 -0.0315263
SPTBN1 spectrin, beta, non-erythrocytic 1 -0.0313614
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0313364
LOC112694756 uncharaterized LOC112694756 -0.0311645
TBXT T-box transcription factor T -0.0301159
CACNA2D3 calcium channel, voltage-dependent, alpha 2/delta subunit 3 -0.029618
PPP1R3C protein phosphatase 1, regulatory subunit 3C -0.0295538
AGFG1 ArfGAP with FG repeats 1 -0.0292024
TPM4 tropomyosin 4 -0.0291232
MAP3K2 mitogen-activated protein kinase kinase kinase 2 -0.0290152
KPNB1 karyopherin (importin) beta 1 -0.0288294
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0288093
SLC38A1 solute carrier family 38, member 1 -0.0287379
RBM39 RNA binding motif protein 39 -0.0287278
NDRG1 N-myc downstream regulated 1 -0.0286385
RPS2 ribosomal protein S2 -0.0285359
RPL37A ribosomal protein L37a -0.0285118
MATR3 matrin 3 -0.0281528
RPS19 ribosomal protein S19 -0.02812
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 -0.0279915
IER3 immediate early response 3 -0.0275975
OSMR oncostatin M receptor -0.0275155
RPL36A ribosomal protein L36a -0.0273334
NALF1 NALCN channel auxiliary factor 1 -0.0273289
PRKD3 protein kinase D3 -0.0270485
RPL34 ribosomal protein L34 -0.0269761
NAP1L1 nucleosome assembly protein 1-like 1 -0.0269558
KDM3A lysine (K)-specific demethylase 3A -0.0267919
ALPK2 alpha-kinase 2 -0.0264865
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase -0.0262996
PJA2 praja ring finger 2, E3 ubiquitin protein ligase -0.0260548
SAMD4A sterile alpha motif domain containing 4A -0.0258574
IFIH1 interferon induced with helicase C domain 1 -0.0257605
DDIT4 DNA-damage-inducible transcript 4 -0.0254148
B2M beta-2-microglobulin -0.0253629