T84 Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

299 genes with high or low copy number in T84 relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
MOXD1 monooxygenase, DBH-like 1 3.2803
CLASP2 cytoplasmic linker associated protein 2 2.91961
C10ORF113 chromosome 10 open reading frame 113 2.33499
NEBL nebulette 2.3321
FAM66E family with sequence similarity 66, member E 2.26618
C3ORF35 chromosome 3 open reading frame 35 2.18526
ZNF705B zinc finger protein 705B 2.18027
GOLGA4 golgin A4 2.16418
SNTG1 syntrophin, gamma 1 2.12373
PTPRN2 protein tyrosine phosphatase, receptor type, N polypeptide 2 2.04579
VILL villin-like 2.02955
MIR26A1 microRNA 26a-1 2.02955
DCLK3 doublecortin-like kinase 3 2.02094
EPM2AIP1 EPM2A (laforin) interacting protein 1 2.02092
TRANK1 tetratricopeptide repeat and ankyrin repeat containing 1 2.02058
LRRFIP2 leucine rich repeat (in FLII) interacting protein 2 2.01857
MLH1 mutL homolog 1 2.01851
MIR128-2 microRNA 128-2 2.01147
SLC22A13 solute carrier family 22 (organic anion/urate transporter), member 13 2.00136
SLC22A14 solute carrier family 22, member 14 2.00136
MYD88 myeloid differentiation primary response 88 2.00119
OXSR1 oxidative stress responsive 1 2.00111
ACAA1 acetyl-CoA acyltransferase 1 2.00108
DLEC1 deleted in lung and esophageal cancer 1 2.00085
PLCD1 phospholipase C, delta 1 2.00059
EIF1B eukaryotic translation initiation factor 1B 1.98856
RPL14 ribosomal protein L14 1.98232
ZNF620 zinc finger protein 620 1.98227
ENTPD3 ectonucleoside triphosphate diphosphohydrolase 3 1.98227
ZNF621 zinc finger protein 621 1.98227
ZNF619 zinc finger protein 619 1.98227
ENTPD3-AS1 ENTPD3 antisense RNA 1 1.98226
MOBP myelin-associated oligodendrocyte basic protein 1.97126
STAC SH3 and cysteine rich domain 1.9523
SNORA62 small nucleolar RNA, H/ACA box 62 1.94745
SNORA6 small nucleolar RNA, H/ACA box 6 1.94745
RPSA ribosomal protein SA 1.94745
WDR48 WD repeat domain 48 1.94739
SLC25A38 solute carrier family 25, member 38 1.94736
GORASP1 golgi reassembly stacking protein 1, 65kDa 1.94735
CSRNP1 cysteine-serine-rich nuclear protein 1 1.94735
XIRP1 xin actin binding repeat containing 1 1.94735
TTC21A tetratricopeptide repeat domain 21A 1.94735
CCR8 chemokine (C-C motif) receptor 8 1.94728
CX3CR1 chemokine (C-X3-C motif) receptor 1 1.94728
ACVR2B activin A receptor, type IIB 1.9136
ACVR2B-AS1 ACVR2B antisense RNA 1 1.9136
SCN10A sodium channel, voltage gated, type X alpha subunit 1.91306
XYLB xylulokinase homolog (H. influenzae) 1.91289
EXOG endo/exonuclease (5'-3'), endonuclease G-like 1.91251
SCN5A sodium channel, voltage gated, type V alpha subunit 1.91173
NBPF11 neuroblastoma breakpoint family, member 11 1.89864
SCN11A sodium channel, voltage gated, type XI alpha subunit 1.88126
ARPP21 cAMP-regulated phosphoprotein, 21kDa 1.87204
ITGA9 integrin, alpha 9 1.86322
PDCD6IP programmed cell death 6 interacting protein 1.86177
EIF1B-AS1 EIF1B antisense RNA 1 1.85999
MYRIP myosin VIIA and Rab interacting protein 1.85817
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 1.79334
RGPD4 RANBP2-like and GRIP domain containing 4 1.59691
SESTD1 SEC14 and spectrin domains 1 1.57343
PRSS45 protease, serine, 45 1.56483
CTDSPL CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like 1.545
ANKS1B ankyrin repeat and sterile alpha motif domain containing 1B 1.48853
FOXD3 forkhead box D3 1.48419
LINC00466 long intergenic non-protein coding RNA 466 1.48237
POLRMT polymerase (RNA) mitochondrial (DNA directed) 1.43575
HCN2 hyperpolarization activated cyclic nucleotide gated potassium channel 2 1.43575
RNF126 ring finger protein 126 1.4357
FGF22 fibroblast growth factor 22 1.4357
BSG basigin (Ok blood group) 1.43562
GZMM granzyme M (lymphocyte met-ase 1) 1.42041
CDC34 cell division cycle 34 1.42027
PRSS57 protease, serine, 57 1.41405
FSTL3 follistatin-like 3 (secreted glycoprotein) 1.41401
PRPF40B PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) 1.41319
MCRS1 microspherule protein 1 1.41319
FAM186B family with sequence similarity 186, member B 1.41319
KCNH3 potassium channel, voltage gated eag related subfamily H, member 3 1.41319
C2CD4C C2 calcium-dependent domain containing 4C 1.40619
CDKN1B cyclin-dependent kinase inhibitor 1B (p27, Kip1) 1.40495
LOC100335030 FGFR1 oncogene partner 2 pseudogene 1.4034
MISP mitotic spindle positioning 1.39987
SHC2 SHC (Src homology 2 domain containing) transforming protein 2 1.39939
TUBA1C tubulin, alpha 1c 1.39899
GRIN3B glutamate receptor, ionotropic, N-methyl-D-aspartate 3B 1.39874
TMEM259 transmembrane protein 259 1.39874
TUBA1A tubulin, alpha 1a 1.39872
TUBA1B tubulin, alpha 1b 1.39857
LMBR1L limb development membrane protein 1-like 1.39856
DHH desert hedgehog 1.39856
PALM paralemmin 1.3984
ZXDB zinc finger, X-linked, duplicated B 1.3957
WDR18 WD repeat domain 18 1.3895
MIR613 microRNA 613 1.38517
GPR19 G protein-coupled receptor 19 1.38494
DNAJC22 DnaJ (Hsp40) homolog, subfamily C, member 22 1.38352
TROAP trophinin associated protein 1.38338
C1QL4 complement component 1, q subcomponent-like 4 1.38338
CACNB3 calcium channel, voltage-dependent, beta 3 subunit 1.38195
BCDIN3D BCDIN3 domain containing 1.38123
BCDIN3D-AS1 BCDIN3D antisense RNA 1 1.38123
NCKAP5L NCK-associated protein 5-like 1.38076
TMBIM6 transmembrane BAX inhibitor motif containing 6 1.38059
RHEBL1 Ras homolog enriched in brain like 1 1.37936
PRPH peripherin 1.37912
KMT2D lysine (K)-specific methyltransferase 2D 1.37908
SPATS2 spermatogenesis associated, serine-rich 2 1.37537
MIR4745 microRNA 4745 1.37533
LPPR3 lipid phosphate phosphatase-related protein type 3 1.3747
PTBP1 polypyrimidine tract binding protein 1 1.3747
MIR3187 microRNA 3187 1.3747
PPAP2C phosphatidic acid phosphatase type 2C 1.37252
DUSP16 dual specificity phosphatase 16 1.36517
LINC01252 long intergenic non-protein coding RNA 1252 1.36422
WNT1 wingless-type MMTV integration site family, member 1 1.36327
WNT10B wingless-type MMTV integration site family, member 10B 1.3632
DDN dendrin 1.36297
LOC283332 uncharacterized LOC283332 1.36271
FAIM2 Fas apoptotic inhibitory molecule 2 1.362
CFD complement factor D (adipsin) 1.36101
ELANE elastase, neutrophil expressed 1.36101
PRTN3 proteinase 3 1.361
AZU1 azurocidin 1 1.361
SCN8A sodium channel, voltage gated, type VIII alpha subunit 1.36077
FIGNL2 fidgetin-like 2 1.36076
PRKAG1 protein kinase, AMP-activated, gamma 1 non-catalytic subunit 1.36059
ACVRL1 activin A receptor type II-like 1 1.36029
LARP4 La ribonucleoprotein domain family, member 4 1.35779
ARID3A AT rich interactive domain 3A (BRIGHT-like) 1.35707
MIER2 mesoderm induction early response 1, family member 2 1.35472
CCDC65 coiled-coil domain containing 65 1.35468
RND1 Rho family GTPase 1 1.35468
FKBP11 FK506 binding protein 11, 19 kDa 1.35468
ARF3 ADP-ribosylation factor 3 1.35437
DDX23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 1.35437
TPGS1 tubulin polyglutamylase complex subunit 1 1.35433
KRBOX4 KRAB box domain containing 4 1.35385
GPD1 glycerol-3-phosphate dehydrogenase 1 (soluble) 1.3521
COX14 COX14 cytochrome c oxidase assembly factor 1.3521
CERS5 ceramide synthase 5 1.3521
ODF3L2 outer dense fiber of sperm tails 3-like 2 1.35185
DDX47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 1.34861
APOLD1 apolipoprotein L domain containing 1 1.34814
CREBL2 cAMP responsive element binding protein-like 2 1.3481
MIR614 microRNA 614 1.34808
GPRC5D G protein-coupled receptor, class C, group 5, member D 1.34794
LOC100506314 uncharacterized LOC100506314 1.34744
HTR7P1 5-hydroxytryptamine (serotonin) receptor 7 pseudogene 1 1.34703
ANKRD33 ankyrin repeat domain 33 1.34683
ADCY6 adenylate cyclase 6 1.34675
MIR4701 microRNA 4701 1.34675
FAM186A family with sequence similarity 186, member A 1.34623
LIMA1 LIM domain and actin binding 1 1.34566
MIR1293 microRNA 1293 1.34566
AQP2 aquaporin 2 (collecting duct) 1.34561
AQP5 aquaporin 5 1.34555
AQP6 aquaporin 6, kidney specific 1.34555
MADCAM1 mucosal vascular addressin cell adhesion molecule 1 1.34544
FMNL3 formin-like 3 1.34433
KISS1R KISS1 receptor 1.34418
GRASP GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein 1.34387
ATG101 autophagy related 101 1.34382
ACVR1B activin A receptor, type IB 1.34382
NR4A1 nuclear receptor subfamily 4, group A, member 1 1.34377
MUCL1 mucin-like 1 1.34371
DIP2B DIP2 disco-interacting protein 2 homolog B (Drosophila) 1.34049
ASIC1 acid sensing (proton gated) ion channel 1 1.33999
FAAH2 fatty acid amide hydrolase 2 1.33996
LRP6 low density lipoprotein receptor-related protein 6 1.33958
DAZAP2 DAZ associated protein 2 1.33832
CELA1 chymotrypsin-like elastase family, member 1 1.33816
POU6F1 POU class 6 homeobox 1 1.33806
GALNT6 polypeptide N-acetylgalactosaminyltransferase 6 1.33799
BIN2 bridging integrator 2 1.33786
SMAGP small cell adhesion glycoprotein 1.33781
SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 1.33754
RACGAP1 Rac GTPase activating protein 1 1.33729
TMPRSS12 transmembrane (C-terminal) protease, serine 12 1.33701
LINC00935 long intergenic non-protein coding RNA 935 1.33693
LETMD1 LETM1 domain containing 1 1.33672
HIGD1C HIG1 hypoxia inducible domain family, member 1C 1.33662
SLC11A2 solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 1.33662
ZNF674-AS1 ZNF674 antisense RNA 1 (head to head) 1.33619
ATF1 activating transcription factor 1 1.33559
LINC01559 long intergenic non-protein coding RNA 1559 1.33214
RPL13AP20 ribosomal protein L13a pseudogene 20 1.3307
HEBP1 heme binding protein 1 1.3299
OR6C3 olfactory receptor, family 6, subfamily C, member 3 1.32825
R3HDM4 R3H domain containing 4 1.32769

low copy number

Symbol Name Standardized Value
REXO1L1P REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 1, pseudogene -3.21048
SCD5 stearoyl-CoA desaturase 5 -3.19428
FLRT3 fibronectin leucine rich transmembrane protein 3 -2.86818
RHOBTB2 Rho-related BTB domain containing 2 -2.59447
BHLHE40 basic helix-loop-helix family, member e40 -2.59447
BHLHE40-AS1 BHLHE40 antisense RNA 1 -2.59447
SETMAR SET domain and mariner transposase fusion gene -2.59447
EGOT eosinophil granule ontogeny transcript (non-protein coding) -2.4682
STON1-GTF2A1L STON1-GTF2A1L readthrough -2.37179
GTF2A1L general transcription factor IIA, 1-like -2.3711
CPQ carboxypeptidase Q -2.3521
FLT1 fms-related tyrosine kinase 1 -2.3514
SUMF1 sulfatase modifying factor 1 -2.3514
SYT14P1 synaptotagmin XIV pseudogene 1 -2.32224
UNC79 unc-79 homolog (C. elegans) -2.21589
BARD1 BRCA1 associated RING domain 1 -2.20347
NFIB nuclear factor I/B -2.20312
LOC550113 uncharacterized LOC550113 -2.1872
TMPRSS11F transmembrane protease, serine 11F -2.08187
KCNQ3 potassium channel, voltage gated KQT-like subfamily Q, member 3 -2.01956
DIAPH3 diaphanous-related formin 3 -2.00401
THUMPD3-AS1 THUMPD3 antisense RNA 1 -1.97222
SETD5 SET domain containing 5 -1.97199
THUMPD3 THUMP domain containing 3 -1.90246
RIMS2 regulating synaptic membrane exocytosis 2 -1.89905
FAM135B family with sequence similarity 135, member B -1.89641
PPP2R2C protein phosphatase 2, regulatory subunit B, gamma -1.89419
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 -1.84451
PJA2 praja ring finger 2, E3 ubiquitin protein ligase -1.84367
ABCA12 ATP-binding cassette, sub-family A (ABC1), member 12 -1.83897
TENM3 teneurin transmembrane protein 3 -1.7908
RNPEPL1 arginyl aminopeptidase (aminopeptidase B)-like 1 -1.75486
PP14571 uncharacterized LOC100130449 -1.7548
MIR149 microRNA 149 -1.7548
STK25 serine/threonine kinase 25 -1.72859
BOK BCL2-related ovarian killer -1.72796
RTP5 receptor (chemosensory) transporter protein 5 (putative) -1.72687
PDCD1 programmed cell death 1 -1.72687
AGXT alanine-glyoxylate aminotransferase -1.71174
C2ORF54 chromosome 2 open reading frame 54 -1.71174
LOC200772 uncharacterized LOC200772 -1.71156
CAPN10 calpain 10 -1.71144
DUSP28 dual specificity phosphatase 28 -1.71143
SEPT2 septin 2 -1.69884
HDLBP high density lipoprotein binding protein -1.6981
THAP4 THAP domain containing 4 -1.69522
ATG4B autophagy related 4B, cysteine peptidase -1.69516
PRR21 proline rich 21 -1.6914
OR6B3 olfactory receptor, family 6, subfamily B, member 3 -1.6914
OR6B2 olfactory receptor, family 6, subfamily B, member 2 -1.6914
ANO7 anoctamin 7 -1.68738
NEU4 sialidase 4 -1.68671
GPR35 G protein-coupled receptor 35 -1.67351
GPC1 glypican 1 -1.67237
D2HGDH D-2-hydroxyglutarate dehydrogenase -1.66592
GAL3ST2 galactose-3-O-sulfotransferase 2 -1.66549
MYEOV2 myeloma overexpressed 2 -1.65518
MIR4786 microRNA 4786 -1.65414
NDUFA10 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa -1.65098
PPP1R7 protein phosphatase 1, regulatory subunit 7 -1.65029
MTERF4 mitochondrial transcription termination factor 4 -1.63644
DTYMK deoxythymidylate kinase (thymidylate kinase) -1.62248
ING5 inhibitor of growth family, member 5 -1.62225
AQP12B aquaporin 12B -1.59325
AQP12A aquaporin 12A -1.59325
OTOS otospiralin -1.59224
FARP2 FERM, RhoGEF and pleckstrin domain protein 2 -1.58252
KIF1A kinesin family member 1A -1.56886
SNX29 sorting nexin 29 -1.55181
ANKMY1 ankyrin repeat and MYND domain containing 1 -1.54494
OR11H1 olfactory receptor, family 11, subfamily H, member 1 -1.52789
LOC728323 uncharacterized LOC728323 -1.52532
TNFRSF19 tumor necrosis factor receptor superfamily, member 19 -1.51474
PASK PAS domain containing serine/threonine kinase -1.50753
ALLC allantoicase -1.46771
LARGE like-glycosyltransferase -1.43875
EYA1 EYA transcriptional coactivator and phosphatase 1 -1.42351
MAP1LC3C microtubule-associated protein 1 light chain 3 gamma -1.4199
KLF1 Kruppel-like factor 1 (erythroid) -1.41434
GCDH glutaryl-CoA dehydrogenase -1.41434
SYCE2 synaptonemal complex central element protein 2 -1.41434
SNED1 sushi, nidogen and EGF-like domains 1 -1.39982
GADD45GIP1 growth arrest and DNA-damage-inducible, gamma interacting protein 1 -1.39431
RAD23A RAD23 homolog A (S. cerevisiae) -1.39431
DAND5 DAN domain family member 5, BMP antagonist -1.39425
FARSA phenylalanyl-tRNA synthetase, alpha subunit -1.39418
CALR calreticulin -1.39403
ANXA2R annexin A2 receptor -1.3514
LOC100132356 uncharacterized LOC100132356 -1.3514
PAIP1 poly(A) binding protein interacting protein 1 -1.3504
SEPP1 selenoprotein P, plasma, 1 -1.34881
BOK-AS1 BOK antisense RNA 1 -1.34606
LOC153684 uncharacterized LOC153684 -1.34567
C5ORF51 chromosome 5 open reading frame 51 -1.33623
FBXO4 F-box protein 4 -1.33571
HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) -1.33468
CCL28 chemokine (C-C motif) ligand 28 -1.33468
C5ORF28 chromosome 5 open reading frame 28 -1.33467
NIM1K NIM1 serine/threonine protein kinase -1.33462
LOC648987 uncharacterized LOC648987 -1.33438
C5ORF34 chromosome 5 open reading frame 34 -1.33305
CCDC152 coiled-coil domain containing 152 -1.33145
LINC00536 long intergenic non-protein coding RNA 536 -1.32942
BRIX1 BRX1, biogenesis of ribosomes -1.32862
DNAJC21 DnaJ (Hsp40) homolog, subfamily C, member 21 -1.32862
PLXDC2 plexin domain containing 2 -1.32831
GHR growth hormone receptor -1.3278
GDNF glial cell derived neurotrophic factor -1.32499
NNT nicotinamide nucleotide transhydrogenase -1.32448