T84 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

365 genes with high or low copy number in T84 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
ZNF620 zinc finger protein 620 4.51153
ZNF621 zinc finger protein 621 4.51153
ZNF619 zinc finger protein 619 4.51153
ENTPD3 ectonucleoside triphosphate diphosphohydrolase 3 4.51153
ENTPD3-AS1 ENTPD3 antisense RNA 1 4.51153
RPL14 ribosomal protein L14 4.51153
CX3CR1 chemokine (C-X3-C motif) receptor 1 3.12177
TRANK1 tetratricopeptide repeat and ankyrin repeat containing 1 3.12177
MOBP myelin-associated oligodendrocyte basic protein 3.12177
MIR26A1 microRNA 26a-1 3.12177
MYD88 myeloid differentiation primary response 88 3.12177
CCR8 chemokine (C-C motif) receptor 8 3.12177
PLCD1 phospholipase C, delta 1 3.12177
EIF1B eukaryotic translation initiation factor 1B 3.12177
EPM2AIP1 EPM2A (laforin) interacting protein 1 3.12177
STAC SH3 and cysteine rich domain 3.12177
SLC25A38 solute carrier family 25, member 38 3.12177
SNORA6 small nucleolar RNA, H/ACA box 6 3.12177
VILL villin-like 3.12177
SLC22A13 solute carrier family 22 (organic anion/urate transporter), member 13 3.12177
OXSR1 oxidative stress responsive 1 3.12177
SLC22A14 solute carrier family 22, member 14 3.12177
DCLK3 doublecortin-like kinase 3 3.12177
DLEC1 deleted in lung and esophageal cancer 1 3.12177
XYLB xylulokinase homolog (H. influenzae) 3.12177
RPSA ribosomal protein SA 3.12177
C3ORF35 chromosome 3 open reading frame 35 3.12177
ACAA1 acetyl-CoA acyltransferase 1 3.12177
SCN11A sodium channel, voltage gated, type XI alpha subunit 2.93899
SNORA64 small nucleolar RNA, H/ACA box 64 2.93899
EXOG endo/exonuclease (5'-3'), endonuclease G-like 2.93899
EIF1B-AS1 EIF1B antisense RNA 1 2.93899
SCN10A sodium channel, voltage gated, type X alpha subunit 2.93899
ACVR2B activin A receptor, type IIB 2.93899
ACVR2B-AS1 ACVR2B antisense RNA 1 2.93899
CSRNP1 cysteine-serine-rich nuclear protein 1 2.93899
SCN5A sodium channel, voltage gated, type V alpha subunit 2.93899
TTC21A tetratricopeptide repeat domain 21A 2.93899
WDR48 WD repeat domain 48 2.93899
CTDSPL CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like 2.93899
GORASP1 golgi reassembly stacking protein 1, 65kDa 2.93899
MYRIP myosin VIIA and Rab interacting protein 2.93899
ITGA9 integrin, alpha 9 2.93899
XIRP1 xin actin binding repeat containing 1 2.93899
DFNA5 deafness, autosomal dominant 5 2.76305
NPY neuropeptide Y 2.76305
OSBPL3 oxysterol binding protein-like 3 2.76305
MPP6 membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) 2.76305
STEAP1B STEAP family member 1B 2.64759
KLRAP1 killer cell lectin-like receptor subfamily A pseudogene 1 2.64759
CLEC7A C-type lectin domain family 7, member A 2.64759
PRB1 proline-rich protein BstNI subfamily 1 2.64759
RNU6-16P RNA, U6 small nuclear 16, pseudogene 2.64759
NPVF neuropeptide VF precursor 2.64759
CYCS cytochrome c, somatic 2.64759
MAGOHB mago-nashi homolog B (Drosophila) 2.64759
LOC100506178 uncharacterized LOC100506178 2.64759
LINC01559 long intergenic non-protein coding RNA 1559 2.64759
MIR613 microRNA 613 2.64759
KLRK1 killer cell lectin-like receptor subfamily K, member 1 2.64759
CLEC12B C-type lectin domain family 12, member B 2.64759
KLRC4 killer cell lectin-like receptor subfamily C, member 4 2.64759
OLR1 oxidized low density lipoprotein (lectin-like) receptor 1 2.64759
TMEM52B transmembrane protein 52B 2.64759
KLRC1 killer cell lectin-like receptor subfamily C, member 1 2.64759
KLRC3 killer cell lectin-like receptor subfamily C, member 3 2.64759
KLRC2 killer cell lectin-like receptor subfamily C, member 2 2.64759
KLRD1 killer cell lectin-like receptor subfamily D, member 1 2.64759
GSG1 germ cell associated 1 2.64759
GABARAPL1 GABA(A) receptor-associated protein like 1 2.64759
C7ORF31 chromosome 7 open reading frame 31 2.64759
HTR7P1 5-hydroxytryptamine (serotonin) receptor 7 pseudogene 1 2.64759
STYK1 serine/threonine/tyrosine kinase 1 2.64759
KLRC4-KLRK1 KLRC4-KLRK1 readthrough 2.64759
EMP1 epithelial membrane protein 1 2.64759
KIAA1467 KIAA1467 2.64759
CLEC9A C-type lectin domain family 9, member A 2.64759
MIR148A microRNA 148a 2.64759
CLEC1A C-type lectin domain family 1, member A 2.64759
GPNMB glycoprotein (transmembrane) nmb 2.59653
TRA2A transformer 2 alpha homolog (Drosophila) 2.59653
HIST4H4 histone cluster 4, H4 2.59653
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 2.59653
FAM126A family with sequence similarity 126, member A 2.59653
HOXA-AS3 HOXA cluster antisense RNA 3 2.59653
H2AFJ H2A histone family, member J 2.59653
TAS2R10 taste receptor, type 2, member 10 2.59653
STK31 serine/threonine kinase 31 2.59653
TAS2R8 taste receptor, type 2, member 8 2.59653
HOXA10-HOXA9 HOXA10-HOXA9 readthrough 2.59653
SP4 Sp4 transcription factor 2.59653
FAM221A family with sequence similarity 221, member A 2.59653
TAS2R14 taste receptor, type 2, member 14 2.59653
RPS2P32 ribosomal protein S2 pseudogene 32 2.59653
TOMM7 translocase of outer mitochondrial membrane 7 homolog (yeast) 2.59653
TAS2R13 taste receptor, type 2, member 13 2.59653
RAPGEF5 Rap guanine nucleotide exchange factor (GEF) 5 2.59653
HOXA2 homeobox A2 2.59653
HOXA1 homeobox A1 2.59653
HOXA9 homeobox A9 2.59653
PRH1 proline-rich protein HaeIII subfamily 1 2.59653
MIR196B microRNA 196b 2.59653
CCDC126 coiled-coil domain containing 126 2.59653
HOTAIRM1 HOXA transcript antisense RNA, myeloid-specific 1 2.59653
PRR4 proline rich 4 (lacrimal) 2.59653
HOXA3 homeobox A3 2.59653
SNORD93 small nucleolar RNA, C/D box 93 2.59653
HOXA11-AS HOXA11 antisense RNA 2.59653
WBP11 WW domain binding protein 11 2.59653
HOXA10 homeobox A10 2.59653
NUPL2 nucleoporin like 2 2.59653
YBX3 Y box binding protein 3 2.59653
HOXA7 homeobox A7 2.59653
HOXA6 homeobox A6 2.59653
HOXA5 homeobox A5 2.59653
HOXA4 homeobox A4 2.59653
HEBP1 heme binding protein 1 2.59653
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2.59653
TAS2R50 taste receptor, type 2, member 50 2.59653
EVX1 even-skipped homeobox 1 2.59653
PRB3 proline-rich protein BstNI subfamily 3 2.59653
PRH2 proline-rich protein HaeIII subfamily 2 2.59653
HOTTIP HOXA distal transcript antisense RNA 2.59653
TAS2R9 taste receptor, type 2, member 9 2.59653
KLHL7 kelch-like family member 7 2.59653
NFE2L3 nuclear factor, erythroid 2-like 3 2.59653
MALSU1 mitochondrial assembly of ribosomal large subunit 1 2.59653
CLK2P1 CDC-like kinase 2, pseudogene 1 2.59653
HOXA13 homeobox A13 2.59653
IL6 interleukin 6 2.59653
HOXA11 homeobox A11 2.59653
GPRC5D G protein-coupled receptor, class C, group 5, member D 2.59653
TAS2R7 taste receptor, type 2, member 7 2.59653
LOC541472 uncharacterized LOC541472 2.59653
PRB4 proline-rich protein BstNI subfamily 4 2.59653
LOC100506314 uncharacterized LOC100506314 2.59653
CBX3 chromobox homolog 3 2.59653
KIAA0087 KIAA0087 2.49065
ETV6 ets variant 6 2.49065
SMCO3 single-pass membrane protein with coiled-coil domains 3 2.49065
DNAH11 dynein, axonemal, heavy chain 11 2.49065
C7ORF71 chromosome 7 open reading frame 71 2.49065
RNU6-19P RNA, U6 small nuclear 19, pseudogene 2.49065
LOH12CR2 loss of heterozygosity, 12, chromosomal region 2 (non-protein coding) 2.49065
RERG RAS-like, estrogen-regulated, growth inhibitor 2.49065
HIBADH 3-hydroxyisobutyrate dehydrogenase 2.49065
ARHGDIB Rho GDP dissociation inhibitor (GDI) beta 2.49065
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B 2.49065
LOC441204 uncharacterized LOC441204 2.49065
PDE6H phosphodiesterase 6H, cGMP-specific, cone, gamma 2.49065
ERP27 endoplasmic reticulum protein 27 2.49065
MGP matrix Gla protein 2.49065
SNX10 sorting nexin 10 2.49065
SKAP2 src kinase associated phosphoprotein 2 2.49065
MANSC1 MANSC domain containing 1 2.49065
LRP6 low density lipoprotein receptor-related protein 6 2.49065
C12ORF60 chromosome 12 open reading frame 60 2.49065
CDCA7L cell division cycle associated 7-like 2.49065
ART4 ADP-ribosyltransferase 4 (Dombrock blood group) 2.49065
LOC100131257 zinc finger protein 655 pseudogene 2.44392
STRAP serine/threonine kinase receptor associated protein 2.44392
SP8 Sp8 transcription factor 2.44392
BCL2L14 BCL2-like 14 (apoptosis facilitator) 2.44392
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 2.44392
SKP1P2 S-phase kinase-associated protein 1 pseudogene 2 2.44392
EPS8 epidermal growth factor receptor pathway substrate 8 2.44392
ITGB8 integrin, beta 8 2.44392
LOH12CR1 loss of heterozygosity, 12, chromosomal region 1 2.44392
JAZF1 JAZF zinc finger 1 2.44392
ABCB5 ATP-binding cassette, sub-family B (MDR/TAP), member 5 2.44392
RPL23P8 ribosomal protein L23 pseudogene 8 2.44392
PTPRO protein tyrosine phosphatase, receptor type, O 2.44392
MACC1-AS1 MACC1 antisense RNA 1 2.41451
DERA deoxyribose-phosphate aldolase (putative) 2.41451
TWISTNB TWIST neighbor 2.41451
MACC1 metastasis associated in colon cancer 1 2.41451
SLC15A5 solute carrier family 15, member 5 2.41451
TMEM196 transmembrane protein 196 2.41451
LMO3 LIM domain only 3 (rhombotin-like 2) 2.41451
LOC283914 2.41451
MIR3146 microRNA 3146 2.41451
TWIST1 twist family bHLH transcription factor 1 2.39327
C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 2.39327
FERD3L Fer3-like bHLH transcription factor 2.39327
PRPS1L1 phosphoribosyl pyrophosphate synthetase 1-like 1 2.35236
HDAC9 histone deacetylase 9 2.35236
RPA3 replication protein A3, 14kDa 2.35236
SNX13 sorting nexin 13 2.35236
MIOS missing oocyte, meiosis regulator, homolog (Drosophila) 2.35236
GLCCI1 glucocorticoid induced 1 2.3178
COL28A1 collagen, type XXVIII, alpha 1 2.3178
AHR aryl hydrocarbon receptor 2.30944
ICA1 islet cell autoantigen 1, 69kDa 2.30944
NDUFA4 NDUFA4, mitochondrial complex associated 2.30944
NXPH1 neurexophilin 1 2.30944
PHF14 PHD finger protein 14 2.30944
AGR3 anterior gradient 3 2.26395
ARL4A ADP-ribosylation factor-like 4A 2.26395
SCIN scinderin 2.26395
AGR2 anterior gradient 2 2.26395
TSPAN13 tetraspanin 13 2.26395
ETV1 ets variant 1 2.26395
ISPD isoprenoid synthase domain containing 2.26395
LRRC72 leucine rich repeat containing 72 2.25904
ANKMY2 ankyrin repeat and MYND domain containing 2 2.25904
VWDE von Willebrand factor D and EGF domains 2.25904
MEOX2 mesenchyme homeobox 2 2.25904
AGMO alkylglycerol monooxygenase 2.25904
TMEM106B transmembrane protein 106B 2.25904
SOSTDC1 sclerostin domain containing 1 2.25904
SNORD56 small nucleolar RNA, C/D box 56 2.24845
THSD7A thrombospondin, type I, domain containing 7A 2.24845
DGKB diacylglycerol kinase, beta 90kDa 2.24139
PER4 period circadian clock 3 pseudogene 2.24139
ZXDB zinc finger, X-linked, duplicated B 2.14664
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 2.14311
LRRFIP2 leucine rich repeat (in FLII) interacting protein 2 2.14116
MIR128-2 microRNA 128-2 2.14116
MLH1 mutL homolog 1 2.14116
ARPP21 cAMP-regulated phosphoprotein, 21kDa 2.14116
GOLGA4 golgin A4 2.14116
SPIN3 spindlin family, member 3 2.13697
SPIN2B spindlin family, member 2B 2.1368
SPIN2A spindlin family, member 2A 2.1368
FAAH2 fatty acid amide hydrolase 2 2.13663
SNORA62 small nucleolar RNA, H/ACA box 62 2.12225
CD69 CD69 molecule 2.11167
CLEC12A C-type lectin domain family 12, member A 2.10992
DDX47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 2.10992
APOLD1 apolipoprotein L domain containing 1 2.10992
KLRF2 killer cell lectin-like receptor subfamily F, member 2 2.10992
CLEC1B C-type lectin domain family 1, member B 2.10992
CLEC2D C-type lectin domain family 2, member D 2.10992
KLRB1 killer cell lectin-like receptor subfamily B, member 1 2.10992
PRB2 proline-rich protein BstNI subfamily 2 2.10992
RPL13AP20 ribosomal protein L13a pseudogene 20 2.10992
KLRF1 killer cell lectin-like receptor subfamily F, member 1 2.10992
CDKN1B cyclin-dependent kinase inhibitor 1B (p27, Kip1) 2.10992
GPRC5A G protein-coupled receptor, class C, group 5, member A 2.10992
CLECL1 C-type lectin-like 1 2.10992
LOC374443 C-type lectin domain family 2, member D pseudogene 2.10992
CLEC2A C-type lectin domain family 2, member A 2.10992
CLEC2B C-type lectin domain family 2, member B 2.10992
TAS2R46 taste receptor, type 2, member 46 2.10317
TAS2R30 taste receptor, type 2, member 30 2.10177
TAS2R19 taste receptor, type 2, member 19 2.10177
TAS2R31 taste receptor, type 2, member 31 2.10177
CREBL2 cAMP responsive element binding protein-like 2 2.10177
TAS2R43 taste receptor, type 2, member 43 2.10177
TAS2R42 taste receptor, type 2, member 42 2.10038
MIR614 microRNA 614 2.10038
LOC100129361 2.10038
GUCY2C guanylate cyclase 2C 2.10038
PRH1-PRR4 PRH1-PRR4 readthrough 2.10038
KLHL7-AS1 KLHL7 antisense RNA 1 (head to head) 2.10038
GPR19 G protein-coupled receptor 19 2.10038
PLBD1 phospholipase B domain containing 1 2.10038
TAS2R20 taste receptor, type 2, member 20 2.10038
ATF7IP activating transcription factor 7 interacting protein 2.09431
DUSP16 dual specificity phosphatase 16 2.09431
MIR1244-1 microRNA 1244-1 2.09073
RERGL RERG/RAS-like 2.08712
LOC100130700 uncharacterized LOC100130700 2.08712
LOC146481 2.08712
MGST1 microsomal glutathione S-transferase 1 2.08712
SNORD65 small nucleolar RNA, C/D box 65 2.08391
CAPZA3 capping protein (actin filament) muscle Z-line, alpha 3 2.08334
PIK3C2G phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma 2.08334
PLCZ1 phospholipase C, zeta 1 2.08334
MIR3974 microRNA 3974 2.08334
SLCO1C1 solute carrier organic anion transporter family, member 1C1 2.07822
ALG10 ALG10, alpha-1,2-glucosyltransferase 2.07776
AEBP2 AE binding protein 2 2.07776
PDE3A phosphodiesterase 3A, cGMP-inhibited 2.07558
LOC100506393 uncharacterized LOC100506393 2.07558
PLEKHA5 pleckstrin homology domain containing, family A member 5 2.0752
SLCO1B3 solute carrier organic anion transporter family, member 1B3 2.07346
FGD4 FYVE, RhoGEF and PH domain containing 4 2.07338
SLCO1B1 solute carrier organic anion transporter family, member 1B1 2.07338
SLCO1B7 solute carrier organic anion transporter family, member 1B7 (non-functional) 2.07338
IAPP islet amyloid polypeptide 2.07018
H3F3C H3 histone, family 3C 2.06989
RECQL RecQ helicase-like 2.06989
PYROXD1 pyridine nucleotide-disulphide oxidoreductase domain 1 2.06989
KIAA1551 KIAA1551 2.06989
RNU6-78P RNA, U6 small nuclear 78, pseudogene 2.06989
GOLT1B golgi transport 1B 2.06989
SLCO1A2 solute carrier organic anion transporter family, member 1A2 2.06707
PKP2 plakophilin 2 2.06626
GYS2 glycogen synthase 2 (liver) 2.06626
SYT10 synaptotagmin X 2.06626
LDHB lactate dehydrogenase B 2.06626
DENND5B-AS1 DENND5B antisense RNA 1 2.06626
METTL20 methyltransferase like 20 2.06626
DNM1L dynamin 1-like 2.06626
AMN1 antagonist of mitotic exit network 1 homolog (S. cerevisiae) 2.06626
BZW2 basic leucine zipper and W2 domains 2 2.06473
TSPAN11 tetraspanin 11 2.06473
DENND5B DENN/MADD domain containing 5B 2.06473
YARS2 tyrosyl-tRNA synthetase 2, mitochondrial 2.06473
DDX11-AS1 DDX11 antisense RNA 1 2.06473
DDX11 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 2.06473
BICD1 bicaudal D homolog 1 (Drosophila) 2.06473
LINC00941 long intergenic non-protein coding RNA 941 2.06316
KCNJ8 potassium channel, inwardly rectifying subfamily J, member 8 2.06316
TMTC1 transmembrane and tetratricopeptide repeat containing 1 2.06316
OVOS2 ovostatin 2 2.06316
FLJ13224 uncharacterized LOC79857 2.06316
FAM60A family with sequence similarity 60, member A 2.06316
SNORA75 small nucleolar RNA, H/ACA box 75 2.06233
OVCH1-AS1 OVCH1 antisense RNA 1 2.0622
FAR2 fatty acyl CoA reductase 2 2.0622
IPO8 importin 8 2.0622
ERGIC2 ERGIC and golgi 2 2.0622
CAPRIN2 caprin family member 2 2.0622
OVCH1 ovochymase 1 2.0622
ST8SIA1 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 2.0615
CMAS cytidine monophosphate N-acetylneuraminic acid synthetase 2.06105
ABCC9 ATP-binding cassette, sub-family C (CFTR/MRP), member 9 2.06105
MANSC4 MANSC domain containing 4 2.06061
KLHL42 kelch-like family member 42 2.06061
MRPS35 mitochondrial ribosomal protein S35 2.06061
REP15 RAB15 effector protein 2.06061
CCDC91 coiled-coil domain containing 91 2.06061
ETNK1 ethanolamine kinase 1 2.05973
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 2.05965
PTHLH parathyroid hormone-like hormone 2.05965
C2CD5 C2 calcium-dependent domain containing 5 2.05965
SMCO2 single-pass membrane protein with coiled-coil domains 2 2.05942
FGFR1OP2 FGFR1 oncogene partner 2 2.05864
ARNTL2 aryl hydrocarbon receptor nuclear translocator-like 2 2.05864
TM7SF3 transmembrane 7 superfamily member 3 2.05864
C12ORF71 chromosome 12 open reading frame 71 2.05864
MED21 mediator complex subunit 21 2.05864
BHLHE41 basic helix-loop-helix family, member e41 2.05778
ASUN asunder spermatogenesis regulator 2.05778
STK38L serine/threonine kinase 38 like 2.05778
MIR920 microRNA 920 2.05673
RASSF8-AS1 RASSF8 atnisense RNA 1 2.05661
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 2.05661
MIR4302 microRNA 4302 2.05635
SSPN sarcospan 2.05635
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 2.0557
LINC00477 long intergenic non-protein coding RNA 477 2.05441
SOX5 SRY (sex determining region Y)-box 5 2.05408
C12ORF77 chromosome 12 open reading frame 77 2.05311
BCAT1 branched chain amino-acid transaminase 1, cytosolic 2.05311
LRMP lymphoid-restricted membrane protein 2.05242
CASC1 cancer susceptibility candidate 1 2.0521
LYRM5 LYR motif containing 5 2.0521
KRAS Kirsten rat sarcoma viral oncogene homolog 2.05093
ADAM6 ADAM metallopeptidase domain 6 (pseudogene) 2.04767
LINC00226 long intergenic non-protein coding RNA 226 2.04712

low copy number

Symbol Name Standardized Value
FLRT3 fibronectin leucine rich transmembrane protein 3 -3.32901
SETMAR SET domain and mariner transposase fusion gene -3.11641
BHLHE40-AS1 BHLHE40 antisense RNA 1 -3.05196
BHLHE40 basic helix-loop-helix family, member e40 -3.05196
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 -3.03082
SUMF1 sulfatase modifying factor 1 -3.03082
EGOT eosinophil granule ontogeny transcript (non-protein coding) -3.03082
LOC642414 tripartite motif containing 64B pseudogene -3.00743
FAM66A family with sequence similarity 66, member A -2.82872
CCSER1 coiled-coil serine-rich protein 1 -2.82606
MACROD2 MACRO domain containing 2 -2.81481
LOC649352 ubiquitin carboxyl-terminal hydrolase 17-like protein 2-like -2.80262