TAK-733_SK-MEL-2 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description TAK-733 perturbation in SK-MEL-2 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the TAK-733_SK-MEL-2 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
ICAM1 intercellular adhesion molecule 1 0.130919
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.118949
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.112039
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.111361
EEF2 eukaryotic translation elongation factor 2 0.107838
FLNA filamin A, alpha 0.107459
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0906796
MYH9 myosin, heavy chain 9, non-muscle 0.0831547
SFTPA2 surfactant protein A2 0.0821407
SQSTM1 sequestosome 1 0.0799097
PLEC plectin 0.0798652
NDRG1 N-myc downstream regulated 1 0.0797966
PKM pyruvate kinase, muscle 0.0729586
MSN moesin 0.0728224
GALNT2 polypeptide N-acetylgalactosaminyltransferase 2 0.0705759
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0689242
LOC112694756 uncharaterized LOC112694756 0.068614
FNDC3B fibronectin type III domain containing 3B 0.0685804
CXCL8 chemokine (C-X-C motif) ligand 8 0.0650372
CD44 CD44 molecule (Indian blood group) 0.0639566
IGFBP3 insulin-like growth factor binding protein 3 0.0629446
ANGPTL4 angiopoietin-like 4 0.0612884
IGFN1 immunoglobulin-like and fibronectin type III domain containing 1 0.059001
FLNB filamin B, beta 0.0583365
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0572448
SPTBN1 spectrin, beta, non-erythrocytic 1 0.057216
HSPA8 heat shock 70kDa protein 8 0.056198
ALCAM activated leukocyte cell adhesion molecule 0.0549869
SEPTIN9 septin 9 0.0543129
RUNX1 runt-related transcription factor 1 0.0538968
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0528091
GOLGB1 golgin B1 0.0523744
SOD2 superoxide dismutase 2, mitochondrial 0.0522288
HDAC9 histone deacetylase 9 0.0522208
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0509944
ANXA2 annexin A2 0.0508224
DST dystonin 0.0499734
NAV2 neuron navigator 2 0.0497406
CD59 CD59 molecule, complement regulatory protein 0.0494954
B2M beta-2-microglobulin 0.0489387
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0484684
TXNRD1 thioredoxin reductase 1 0.0483119
RPS3 ribosomal protein S3 0.0477157
SMAD3 SMAD family member 3 0.0474071
BHLHE40 basic helix-loop-helix family, member e40 0.0466497
SOX10 SRY (sex determining region Y)-box 10 0.0466118
VEGFA vascular endothelial growth factor A 0.0463596
CTSB cathepsin B 0.0461981
ZMIZ1 zinc finger, MIZ-type containing 1 0.0447729
PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 0.044177
TRIO trio Rho guanine nucleotide exchange factor 0.0435499
RACK1 receptor for activated C kinase 1 0.0428227
FUS FUS RNA binding protein 0.0427855
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 0.0424768
RPL3 ribosomal protein L3 0.0422989
LAMP2 lysosomal-associated membrane protein 2 0.042067
UBR4 ubiquitin protein ligase E3 component n-recognin 4 0.0417712
NOTCH2 notch 2 0.041574
FAT1 FAT atypical cadherin 1 0.0410775
PRRC2C proline-rich coiled-coil 2C 0.0402286
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0400598
SRRM2 serine/arginine repetitive matrix 2 0.0397593
SMG1 SMG1 phosphatidylinositol 3-kinase-related kinase 0.0396918
MACF1 microtubule-actin crosslinking factor 1 0.0394309
EP300 E1A binding protein p300 0.0386397
PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 0.0386093
ARRDC3 arrestin domain containing 3 0.0383561
PJA2 praja ring finger 2, E3 ubiquitin protein ligase 0.0379282
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0377514
NONO non-POU domain containing, octamer-binding 0.0374839
LINGO2 leucine rich repeat and Ig domain containing 2 0.0370799
AKAP12 A kinase (PRKA) anchor protein 12 0.0369611
OXSR1 oxidative stress responsive 1 0.0362274
TM4SF1 transmembrane 4 L six family member 1 0.0360655
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0358857
KTN1 kinectin 1 (kinesin receptor) 0.0357513
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.0357212
NFE2L1 nuclear factor, erythroid 2-like 1 0.0355464
SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 0.0353745
ATXN1 ataxin 1 0.0353704
SET SET nuclear proto-oncogene 0.0352862
BACE2 beta-site APP-cleaving enzyme 2 0.0348591
PTTG1IP pituitary tumor-transforming 1 interacting protein 0.0348082
KPNA4 karyopherin alpha 4 (importin alpha 3) 0.0347659
NRP2 neuropilin 2 0.0347159
DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 0.0346427
NAMPT nicotinamide phosphoribosyltransferase 0.0342509
KMT2D lysine (K)-specific methyltransferase 2D 0.034245
ARHGEF11 Rho guanine nucleotide exchange factor (GEF) 11 0.0341835
KLF6 Kruppel-like factor 6 0.0334312
CEP250 centrosomal protein 250kDa 0.0333758
TNIP1 TNFAIP3 interacting protein 1 0.0332368
TPM3 tropomyosin 3 0.0331518
YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma 0.0330366
SSH1 slingshot protein phosphatase 1 0.0330037
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.032767
SLC7A5 solute carrier family 7 (amino acid transporter light chain, L system), member 5 0.032423
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.0322556
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0320757
BRD2 bromodomain containing 2 0.0314365

decreased expression

Symbol Name Standardized Value
FN1 fibronectin 1 -0.22785
NLGN1 neuroligin 1 -0.197825
NRG3 neuregulin 3 -0.143696
LSAMP limbic system-associated membrane protein -0.140257
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.105889
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0851896
RAD51B RAD51 paralog B -0.0473878
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0340294
PTMA prothymosin, alpha -0.0328222
SBF2 SET binding factor 2 -0.0327049
VIM vimentin -0.0317005
ITGB3 integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) -0.0315911
FMN1 formin 1 -0.0315105
TNNC1 troponin C type 1 (slow) -0.0311099
CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 -0.0306546
MAML3 mastermind-like 3 (Drosophila) -0.0301002
FHIT fragile histidine triad -0.0293944
SMYD3 SET and MYND domain containing 3 -0.0292468
TMSB10 thymosin beta 10 -0.028709
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.0282739
SUPT3H suppressor of Ty 3 homolog (S. cerevisiae) -0.0277316
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.0273144
FRMD4A FERM domain containing 4A -0.0243226
COA1 cytochrome c oxidase assembly factor 1 homolog (S. cerevisiae) -0.0240499
LCORL ligand dependent nuclear receptor corepressor-like -0.0239394
PYGB phosphorylase, glycogen; brain -0.023338
MACROD2 MACRO domain containing 2 -0.0232512
HIBADH 3-hydroxyisobutyrate dehydrogenase -0.0230414
EHBP1 EH domain binding protein 1 -0.0228587
CNIH3 cornichon family AMPA receptor auxiliary protein 3 -0.0220788
IL1RAPL1 interleukin 1 receptor accessory protein-like 1 -0.0217326
CDK13 cyclin-dependent kinase 13 -0.0216587
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0209632
NHSL1 NHS-like 1 -0.0203196
DLGAP1 discs, large (Drosophila) homolog-associated protein 1 -0.0202692
CCND1 cyclin D1 -0.0200806
SRPK2 SRSF protein kinase 2 -0.0197327
ZBTB20 zinc finger and BTB domain containing 20 -0.0196922
SLC20A1 solute carrier family 20 (phosphate transporter), member 1 -0.0195887
FAF1 Fas (TNFRSF6) associated factor 1 -0.0195818
CTSD cathepsin D -0.0194627
EYA1 EYA transcriptional coactivator and phosphatase 1 -0.0192266
BCAS3 breast carcinoma amplified sequence 3 -0.0184926
SPPL3 signal peptide peptidase like 3 -0.0183943
NRN1 neuritin 1 -0.0183447
NKTR natural killer cell triggering receptor -0.0179187
RPS24 ribosomal protein S24 -0.0178143
THOC2 THO complex 2 -0.0176807
MCTP2 multiple C2 domains, transmembrane 2 -0.0176765
ANKFN1 ankyrin-repeat and fibronectin type III domain containing 1 -0.0176095
USP53 ubiquitin specific peptidase 53 -0.0174747
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0174539
CELF2 CUGBP, Elav-like family member 2 -0.0174015
TIMP3 TIMP metallopeptidase inhibitor 3 -0.0173201
CCDC14 coiled-coil domain containing 14 -0.0169512
TENM1 teneurin transmembrane protein 1 -0.0159225
APPBP2 amyloid beta precursor protein (cytoplasmic tail) binding protein 2 -0.0158599
ACSS3 acyl-CoA synthetase short-chain family member 3 -0.015727
APOD apolipoprotein D -0.0156997
PHF14 PHD finger protein 14 -0.015639
ATP1B3 ATPase, Na+/K+ transporting, beta 3 polypeptide -0.0155927
ST6GAL1 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 -0.0155465
KAZN kazrin, periplakin interacting protein -0.0154734
PLCB4 phospholipase C, beta 4 -0.0153256
PRELID2 PRELI domain containing 2 -0.015214
CDH13 cadherin 13 -0.0149387
IGFBP7 insulin-like growth factor binding protein 7 -0.0149003
UBE2D2 ubiquitin-conjugating enzyme E2D 2 -0.0148713
DIP2C DIP2 disco-interacting protein 2 homolog C (Drosophila) -0.0148523
POU2F1 POU class 2 homeobox 1 -0.0148512
ARPC1B actin related protein 2/3 complex, subunit 1B, 41kDa -0.0148314
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) -0.0147992
CLEC2D C-type lectin domain family 2, member D -0.0146346
CDK6 cyclin-dependent kinase 6 -0.0146328
LEF1 lymphoid enhancer-binding factor 1 -0.0145247
FBXO34 F-box protein 34 -0.0144437
DPP6 dipeptidyl-peptidase 6 -0.0144023
ADCY1 adenylate cyclase 1 (brain) -0.0143054
ZZZ3 zinc finger, ZZ-type containing 3 -0.0142829
S100A6 S100 calcium binding protein A6 -0.0141386
ARB2A ARB2 cotranscriptional regulator A -0.014119
MON2 MON2 homolog (S. cerevisiae) -0.0140424
SMC4 structural maintenance of chromosomes 4 -0.0140249
GNG7 guanine nucleotide binding protein (G protein), gamma 7 -0.0140019
CENPP centromere protein P -0.0139006
VMA21 VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) -0.0138603
RPS6KA5 ribosomal protein S6 kinase, 90kDa, polypeptide 5 -0.0137532
APBB2 amyloid beta (A4) precursor protein-binding, family B, member 2 -0.0136201
ITGB3BP integrin beta 3 binding protein (beta3-endonexin) -0.0135764
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0135153
TCF12 transcription factor 12 -0.0133692
PRAME preferentially expressed antigen in melanoma -0.0132078
HDAC8 histone deacetylase 8 -0.0131315
SOX5 SRY (sex determining region Y)-box 5 -0.0131083
PAICS phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase -0.013039
DNAH14 dynein, axonemal, heavy chain 14 -0.0129397
POLA1 polymerase (DNA directed), alpha 1, catalytic subunit -0.0128388
KIF18B kinesin family member 18B -0.0128345
ZSWIM6 zinc finger, SWIM-type containing 6 -0.012797
ARID4B AT rich interactive domain 4B (RBP1-like) -0.0127509