TE-11 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description A immortal human esophagus-derived cell line cell that has the characteristics: Human cell line derived from esophageal cancer. Moderately differentiated squamous cell carcinoma. TKG0262(Deposited from Tohoku Univ.). (Cell Line Ontology, CLO_0051373)
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Genes

29 genes with high or low copy number in TE-11 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
DHCR7 7-dehydrocholesterol reductase 2.24845
FLJ42102 uncharacterized LOC399923 2.24845
CPT1A carnitine palmitoyltransferase 1A (liver) 2.24139
MRPL21 mitochondrial ribosomal protein L21 2.23078
IGHMBP2 immunoglobulin mu binding protein 2 2.23078
MRGPRD MAS-related GPR, member D 2.22783
MRGPRF MAS-related GPR, member F 2.22633
SHANK2-AS3 SHANK2 antisense RNA 3 2.22291
MIR3664 microRNA 3664 2.22291
TPCN2 two pore segment channel 2 2.21258
FADD Fas (TNFRSF6)-associated via death domain 2.16564
MIR548K microRNA 548k 2.16564
MYEOV myeloma overexpressed 2.16459
PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 2.16459
FGF3 fibroblast growth factor 3 2.16307
CTTN cortactin 2.16307
ANO1 anoctamin 1, calcium activated chloride channel 2.16307
FGF4 fibroblast growth factor 4 2.16176
FGF19 fibroblast growth factor 19 2.1605
CCND1 cyclin D1 2.1605
ORAOV1 oral cancer overexpressed 1 2.16017
SHANK2-AS1 SHANK2 antisense RNA 1 2.05422
SHANK2 SH3 and multiple ankyrin repeat domains 2 2.04969

low copy number

Symbol Name Standardized Value
PACRG PARK2 co-regulated -3.03592
PARK2 parkin RBR E3 ubiquitin protein ligase -2.85647
DUSP21 dual specificity phosphatase 21 -2.85574
CXORF36 chromosome X open reading frame 36 -2.85574
KDM6A lysine (K)-specific demethylase 6A -2.84592
HCG4B HLA complex group 4B (non-protein coding) -2.75184