TE-5 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description A immortal human esophagus-derived cell line cell that has the characteristics: Human cell line derived from poorly differntiated esophageal squamous cell carcinoma. Not transplantable to nude mouse. TKG0256 (Deposited from Tohoku Univ.). (Cell Line Ontology, CLO_0051375)
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Genes

26 genes with high or low copy number in TE-5 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
TMEM243 transmembrane protein 243, mitochondrial 2.41451
TP53TG1 TP53 target 1 (non-protein coding) 2.41451
DMTF1 cyclin D binding myb-like transcription factor 1 2.41451
CROT carnitine O-octanoyltransferase 2.39327
KIAA1324L KIAA1324-like 2.39327
ABCB4 ATP-binding cassette, sub-family B (MDR/TAP), member 4 2.39327
GRM3 glutamate receptor, metabotropic 3 2.36889
ABCB1 ATP-binding cassette, sub-family B (MDR/TAP), member 1 2.36889
RUNDC3B RUN domain containing 3B 2.36889
DBF4 DBF4 zinc finger 2.36889
SLC25A40 solute carrier family 25, member 40 2.36889
ADAM22 ADAM metallopeptidase domain 22 2.30944
ODF1 outer dense fiber of sperm tails 1 2.283
ABRA actin binding Rho activating protein 2.22793
OXR1 oxidation resistance 1 2.22783
LINC00417 long intergenic non-protein coding RNA 417 2.12548
LINC00421 long intergenic non-protein coding RNA 421 2.12527
ANKRD26P3 ankyrin repeat domain 26 pseudogene 3 2.11467
ANKRD20A9P ankyrin repeat domain 20 family, member A9, pseudogene 2.11467
TPTE2 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 2.11435
LINC00442 long intergenic non-protein coding RNA 442 2.10548
RNU6-52P RNA, U6 small nuclear 52, pseudogene 2.10548
TUBA3C tubulin, alpha 3c 2.09826

low copy number

Symbol Name Standardized Value
NBPF15 neuroblastoma breakpoint family, member 15 -3.18157
LRRN3 leucine rich repeat neuronal 3 -2.98526
CES1P1 carboxylesterase 1 pseudogene 1 -2.74485