TE-9 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description A immortal human esophagus-derived cell line cell that has the characteristics: Human esophageal squamous cell carcinoma (poorly differentiated) cell line. Not transplantable to nude mouse. TKG0260 (Deposited from Tohoku Univ.). (Cell Line Ontology, CLO_0051379)
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Genes

33 genes with high or low copy number in TE-9 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
ZFAT zinc finger and AT hook domain containing 2.22291
MIR548K microRNA 548k 2.16564
FADD Fas (TNFRSF6)-associated via death domain 2.16564
MYEOV myeloma overexpressed 2.16459
PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 2.16459
ANO1 anoctamin 1, calcium activated chloride channel 2.16307
FGF3 fibroblast growth factor 3 2.16307
CTTN cortactin 2.16307
FGF4 fibroblast growth factor 4 2.16176
CCND1 cyclin D1 2.1605
FGF19 fibroblast growth factor 19 2.1605
ORAOV1 oral cancer overexpressed 1 2.16017
FAM84B family with sequence similarity 84, member B 2.15847
ZNF595 zinc finger protein 595 2.1339
ZNF718 zinc finger protein 718 2.1339
PCAT1 prostate cancer associated transcript 1 (non-protein coding) 2.08634
MIR1206 microRNA 1206 2.07612
MIR1205 microRNA 1205 2.07136
MIR1208 microRNA 1208 2.07136
MIR1207 microRNA 1207 2.07136
TMEM75 transmembrane protein 75 2.06401
CCAT1 colon cancer associated transcript 1 (non-protein coding) 2.0614
POU5F1B POU class 5 homeobox 1B 2.05836
SHANK2 SH3 and multiple ankyrin repeat domains 2 2.04969
MIR1204 microRNA 1204 2.04661
PVT1 Pvt1 oncogene (non-protein coding) 2.04585

low copy number

Symbol Name Standardized Value
EXOC4 exocyst complex component 4 -3.36169
LRGUK leucine-rich repeats and guanylate kinase domain containing -3.36169
GOLGA4 golgin A4 -3.2703
CHIAP2 chitinase, acidic pseudogene 2 -3.05196
CHIA chitinase, acidic -3.05196
PSG4 pregnancy specific beta-1-glycoprotein 4 -2.75301
LOC284344 uncharacterized LOC284344 -2.74526