TE159T Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: rhabdomyosarcoma (Cell Line Ontology, CLO_0009292)
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Genes

45 genes with high or low copy number in TE159T relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
LOC652276 potassium channel tetramerization domain containing 5 pseudogene 1.98903
FLJ42627 uncharacterized LOC645644 1.98899
SNORD115-3 small nucleolar RNA, C/D box 115-3 1.98807
SNORD115-4 small nucleolar RNA, C/D box 115-4 1.98786
SNORD115-6 small nucleolar RNA, C/D box 115-6 1.98775
SNORD115-7 small nucleolar RNA, C/D box 115-7 1.98765
SNORD115-8 small nucleolar RNA, C/D box 115-8 1.98749
SNORD115-11 small nucleolar RNA, C/D box 115-11 1.92209
SNORD115-29 small nucleolar RNA, C/D box 115-29 1.92209
SNORD115-36 small nucleolar RNA, C/D box 115-36 1.92209
SNORD115-43 small nucleolar RNA, C/D box 115-43 1.92209
SNORD115-10 small nucleolar RNA, C/D box 115-10 1.91821
SNORD115-5 small nucleolar RNA, C/D box 115-5 1.9182
SNORD115-12 small nucleolar RNA, C/D box 115-12 1.9182
SNORD115-9 small nucleolar RNA, C/D box 115-9 1.9182
SNORD109A small nucleolar RNA, C/D box 109A 1.86933
SNORD109B small nucleolar RNA, C/D box 109B 1.86933
KCTD5 potassium channel tetramerization domain containing 5 1.81837
ERVK13-1 endogenous retrovirus group K13, member 1 1.80831
PRSS46 protease, serine, 46 1.42717

low copy number

Symbol Name Standardized Value
ACP6 acid phosphatase 6, lysophosphatidic -3.21049
CHN2 chimerin 2 -2.806
KIF2A kinesin heavy chain member 2A -2.61966
LAMA2 laminin, alpha 2 -2.59064
FAM71F1 family with sequence similarity 71, member F1 -2.57861
DAOA-AS1 DAOA antisense RNA 1 -2.4476
DAOA D-amino acid oxidase activator -2.4476
PUS7 pseudouridylate synthase 7 (putative) -2.36595
ZNF521 zinc finger protein 521 -2.24394
NAT8 N-acetyltransferase 8 (GCN5-related, putative) -2.15048
FBXO16 F-box protein 16 -2.14483
S100A9 S100 calcium binding protein A9 -2.09287
MECOM MDS1 and EVI1 complex locus -2.03583
NBPF11 neuroblastoma breakpoint family, member 11 -1.99359
MPG N-methylpurine-DNA glycosylase -1.89232
ALMS1P Alstrom syndrome 1 pseudogene -1.84343
LINC01558 long intergenic non-protein coding RNA 1558 -1.83418
RHBDF1 rhomboid 5 homolog 1 (Drosophila) -1.83266
OPCML opioid binding protein/cell adhesion molecule-like -1.76093
TNR tenascin R -1.71744
PGR progesterone receptor -1.67776
IMPA2 inositol(myo)-1(or 4)-monophosphatase 2 -1.49959
RGS6 regulator of G-protein signaling 6 -1.49029
LILRB3 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3 -1.34775
LILRA6 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 -1.33683