TE617T Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: rhabdomyosarcoma (Cell Line Ontology, CLO_0009304)
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Genes

88 genes with high or low copy number in TE617T relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
LOC441666 zinc finger protein 91 pseudogene 2.24211
RBFOX3 RNA binding protein, fox-1 homolog (C. elegans) 3 1.86663
HEATR4 HEAT repeat containing 4 1.79562
SCLT1 sodium channel and clathrin linker 1 1.60638
DPP10 dipeptidyl-peptidase 10 (non-functional) 1.59549
NUTM2A-AS1 NUTM2A antisense RNA 1 1.44025
KIR3DL1 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1 1.36927

low copy number

Symbol Name Standardized Value
FGFR3 fibroblast growth factor receptor 3 -3.21049
TONSL tonsoku-like, DNA repair protein -3.21049
TUSC7 tumor suppressor candidate 7 (non-protein coding) -3.21049
HERC2P10 hect domain and RLD 2 pseudogene 10 -3.21037
TTTY11 testis-specific transcript, Y-linked 11 (non-protein coding) -2.71045
LILRA6 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 -2.64195
BCL9 B-cell CLL/lymphoma 9 -2.59447
HLA-A major histocompatibility complex, class I, A -2.59447
SYT2 synaptotagmin II -2.51756
RBMY3AP RNA binding motif protein, Y-linked, family 3, member A pseudogene -2.44311
DAZ1 deleted in azoospermia 1 -2.29507
PTPN5 protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) -2.27955
POM121L8P POM121 transmembrane nucleoporin-like 8 pseudogene -2.20291
TSPAN9 tetraspanin 9 -2.14476
CDC73 cell division cycle 73 -2.11405
TMEM175 transmembrane protein 175 -2.09289
DGKQ diacylglycerol kinase, theta 110kDa -2.09289
ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 -2.09288
RBMY1A3P RNA binding motif protein, Y-linked, family 1, member A3 pseudogene -2.05158
PRKY protein kinase, Y-linked, pseudogene -2.02435
AMELY amelogenin, Y-linked -2.02344
TBL1Y transducin (beta)-like 1, Y-linked -1.99317
TTTY16 testis-specific transcript, Y-linked 16 (non-protein coding) -1.96265
SRP54 signal recognition particle 54kDa -1.95454
CSTF2T cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant -1.95024
ERBB4 erb-b2 receptor tyrosine kinase 4 -1.94206
GGT8P gamma-glutamyltransferase 8 pseudogene -1.929
PLXNC1 plexin C1 -1.92894
TMEM63C transmembrane protein 63C -1.92801
OCA2 oculocutaneous albinism II -1.91027
SPDYE2B speedy/RINGO cell cycle regulator family member E2B -1.8539
SPDYE2 speedy/RINGO cell cycle regulator family member E2 -1.8539
RASA4 RAS p21 protein activator 4 -1.8531
TTTY12 testis-specific transcript, Y-linked 12 (non-protein coding) -1.85257
ZNF490 zinc finger protein 490 -1.85153
TTTY18 testis-specific transcript, Y-linked 18 (non-protein coding) -1.8498
TTTY19 testis-specific transcript, Y-linked 19 (non-protein coding) -1.8498
NBPF11 neuroblastoma breakpoint family, member 11 -1.84892
RBMY2EP RNA binding motif protein, Y-linked, family 2, member E pseudogene -1.84851
PFN1P2 profilin 1 pseudogene 2 -1.83568
LOC653513 phosphodiesterase 4D interacting protein pseudogene -1.83568
NBPF9 neuroblastoma breakpoint family, member 9 -1.83565
EIF1AY eukaryotic translation initiation factor 1A, Y-linked -1.82829
TTTY10 testis-specific transcript, Y-linked 10 (non-protein coding) -1.82829
TXLNGY taxilin gamma pseudogene, Y-linked -1.82263
BCORP1 BCL6 corepressor pseudogene 1 -1.82263
RBMY2FP RNA binding motif protein, Y-linked, family 2, member F pseudogene -1.81599
TTTY5 testis-specific transcript, Y-linked 5 (non-protein coding) -1.81599
OCLN occludin -1.81434
TEC tec protein tyrosine kinase -1.80327
TTTY14 testis-specific transcript, Y-linked 14 (non-protein coding) -1.76626
NLGN4Y neuroligin 4, Y-linked -1.75719
NLGN4Y-AS1 NLGN4Y antisense RNA 1 -1.75719
CLIC5 chloride intracellular channel 5 -1.75532
TMSB4Y thymosin beta 4, Y-linked -1.74469
USP9Y ubiquitin specific peptidase 9, Y-linked -1.73819
GYG2P1 glycogenin 2 pseudogene 1 -1.72781
DCDC2 doublecortin domain containing 2 -1.69945
HCG4B HLA complex group 4B (non-protein coding) -1.69475
ZNF623 zinc finger protein 623 -1.64762
BTNL8 butyrophilin-like 8 -1.64745
MIR570 microRNA 570 -1.64084
C2CD2 C2 calcium-dependent domain containing 2 -1.63996
BTNL3 butyrophilin-like 3 -1.63028
TTTY15 testis-specific transcript, Y-linked 15 (non-protein coding) -1.61386
MUC20 mucin 20, cell surface associated -1.60949
RHD Rh blood group, D antigen -1.60315
MIR548AI microRNA 548ai -1.59882
KDM5D lysine (K)-specific demethylase 5D -1.56183
KRT85 keratin 85, type II -1.55967
APOD apolipoprotein D -1.54421
PDZRN4 PDZ domain containing ring finger 4 -1.54285
MARC2 mitochondrial amidoxime reducing component 2 -1.51277
SNTG2 syntrophin, gamma 2 -1.51187
LEPROT leptin receptor overlapping transcript -1.50476
RPS4Y2 ribosomal protein S4, Y-linked 2 -1.50418
LEPR leptin receptor -1.47921
UGT2B17 UDP glucuronosyltransferase 2 family, polypeptide B17 -1.4659
CSMD1 CUB and Sushi multiple domains 1 -1.45851
EPHA6 EPH receptor A6 -1.43072
KIAA1429 KIAA1429 -1.38246