Talc_KATO III Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Talc perturbation in KATO III cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Talc_KATO III drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FGFR2 fibroblast growth factor receptor 2 0.321889
PTMA prothymosin, alpha 0.0773086
FTH1 ferritin, heavy polypeptide 1 0.0679102
H1-0 H1.0 linker histone 0.063546
ANXA1 annexin A1 0.0561329
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.0554609
HM13 histocompatibility (minor) 13 0.0539382
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0537636
GOLGA4 golgin A4 0.0526814
RPS3 ribosomal protein S3 0.0522531
NPSR1 neuropeptide S receptor 1 0.0454662
GARS1 glycyl-tRNA synthetase 1 0.0413572
AGR3 anterior gradient 3 0.0413369
EIF1 eukaryotic translation initiation factor 1 0.0400064
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 0.0395868
SEC31A SEC31 homolog A (S. cerevisiae) 0.0340446
PGK1 phosphoglycerate kinase 1 0.0337979
RPL18 ribosomal protein L18 0.033506
FAM13A family with sequence similarity 13, member A 0.0330418
SRP54 signal recognition particle 54kDa 0.0327064
ZCCHC7 zinc finger, CCHC domain containing 7 0.0322488
PMM2 phosphomannomutase 2 0.0320755
RPL4 ribosomal protein L4 0.0320666
HLA-A major histocompatibility complex, class I, A 0.031529
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0309913
TMF1 TATA element modulatory factor 1 0.0309474
HERPUD1 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 0.0307096
CDK13 cyclin-dependent kinase 13 0.0298671
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0297027
KDM3A lysine (K)-specific demethylase 3A 0.0291846
GFPT1 glutamine--fructose-6-phosphate transaminase 1 0.0290123
MORF4L2 mortality factor 4 like 2 0.0284634
AREG amphiregulin 0.0279354
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 0.0274682
GOLGB1 golgin B1 0.0273608
EIF2S2 eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa 0.0259038
ARHGAP32 Rho GTPase activating protein 32 0.0257974
KLF5 Kruppel-like factor 5 (intestinal) 0.0257446
DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 0.0255178
COG5 component of oligomeric golgi complex 5 0.0254316
RBM39 RNA binding motif protein 39 0.0247763
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0247558
ANXA2 annexin A2 0.0244101
ENO1 enolase 1, (alpha) 0.0240141
CSDE1 cold shock domain containing E1, RNA-binding 0.0238266
RAB1A RAB1A, member RAS oncogene family 0.0235743
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0235661
IARS1 isoleucyl-tRNA synthetase 1 0.0234517
DDIT4 DNA-damage-inducible transcript 4 0.023043
HKDC1 hexokinase domain containing 1 0.0228613
RPL37A ribosomal protein L37a 0.0227793
ANKHD1 ankyrin repeat and KH domain containing 1 0.0225824
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 0.0224947
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa 0.0224875
KRT17 keratin 17, type I 0.0223274
RPS12 ribosomal protein S12 0.0221736
PGM3 phosphoglucomutase 3 0.0221613
MUC17 mucin 17, cell surface associated 0.0221536
SEC61A1 Sec61 alpha 1 subunit (S. cerevisiae) 0.0220129
KMT2E lysine (K)-specific methyltransferase 2E 0.0219646
SETD5 SET domain containing 5 0.0219137
DSG2 desmoglein 2 0.0218872
ANKRD11 ankyrin repeat domain 11 0.0210886
KLHL29 kelch-like family member 29 0.0208376
FNIP1 folliculin interacting protein 1 0.0207364
RPS2 ribosomal protein S2 0.0206642
EHBP1 EH domain binding protein 1 0.0206529
CANX calnexin 0.0203025
NFE2L1 nuclear factor, erythroid 2-like 1 0.0200496
ZNF706 zinc finger protein 706 0.0198799
CYCS cytochrome c, somatic 0.0198567
LAMB3 laminin, beta 3 0.019788
OSBPL2 oxysterol binding protein-like 2 0.0197487
PDIA6 protein disulfide isomerase family A, member 6 0.0197306
AP2B1 adaptor-related protein complex 2, beta 1 subunit 0.0195698
SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein 0.0194947
SRPRA SRP receptor subunit alpha 0.0192774
PIP5K1B phosphatidylinositol-4-phosphate 5-kinase, type I, beta 0.0192202
AHNAK AHNAK nucleoprotein 0.0191604
EIF2AK1 eukaryotic translation initiation factor 2-alpha kinase 1 0.019081
ARFGAP3 ADP-ribosylation factor GTPase activating protein 3 0.0188305
PREPL prolyl endopeptidase-like 0.0186015
BCLAF1 BCL2-associated transcription factor 1 0.0185779
WARS1 tryptophanyl-tRNA synthetase 1 0.0185587
SEL1L sel-1 suppressor of lin-12-like (C. elegans) 0.0182108
ERRFI1 ERBB receptor feedback inhibitor 1 0.018082
TCEA1 transcription elongation factor A (SII), 1 0.0180714
SELENOK selenoprotein K 0.0179426
TAS2R14 taste receptor, type 2, member 14 0.0177429
SCFD1 sec1 family domain containing 1 0.0176556
PSMB1 proteasome (prosome, macropain) subunit, beta type, 1 0.017576
PAPOLA poly(A) polymerase alpha 0.0175226
ARFGEF3 ARFGEF family member 3 0.0173227
TPM3 tropomyosin 3 0.0172886
PCBP1 poly(rC) binding protein 1 0.0172342
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 0.017075
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0170017
DNAJC25 DnaJ (Hsp40) homolog, subfamily C , member 25 0.0164893
HDLBP high density lipoprotein binding protein 0.0163329
SEC22A SEC22 vesicle trafficking protein homolog A (S. cerevisiae) 0.0162431

decreased expression

Symbol Name Standardized Value
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa -0.111333
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.0811775
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0772633
TMSB10 thymosin beta 10 -0.0714685
RPL35A ribosomal protein L35a -0.0616341
CEMIP cell migration inducing protein, hyaluronan binding -0.0601497
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0585329
IFI27 interferon, alpha-inducible protein 27 -0.052113
GMDS GDP-mannose 4,6-dehydratase -0.0477253
SERPINB1 serpin peptidase inhibitor, clade B (ovalbumin), member 1 -0.0457722
ADAM9 ADAM metallopeptidase domain 9 -0.0412447
KRT8 keratin 8, type II -0.0401105
MUC1 mucin 1, cell surface associated -0.0397623
CALR calreticulin -0.039747
CLDN4 claudin 4 -0.0394701
LOC112694756 uncharaterized LOC112694756 -0.0382067
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0347362
C6ORF132 chromosome 6 open reading frame 132 -0.0342499
EGR1 early growth response 1 -0.0341585
RPS21 ribosomal protein S21 -0.0341254
WWC1 WW and C2 domain containing 1 -0.0337687
ACTN4 actinin, alpha 4 -0.032282
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.0316439
RPL38 ribosomal protein L38 -0.0306691
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta -0.0306129
TXNRD1 thioredoxin reductase 1 -0.0305538
FAT1 FAT atypical cadherin 1 -0.0289797
PKM pyruvate kinase, muscle -0.0276602
TNRC18 trinucleotide repeat containing 18 -0.0276132
STK24 serine/threonine kinase 24 -0.0271634
ST14 suppression of tumorigenicity 14 (colon carcinoma) -0.0268584
BCL2L1 BCL2-like 1 -0.0261695
LOC102724023 ES1 protein homolog, mitochondrial -0.0259479
INSIG1 insulin induced gene 1 -0.0257437
PPDPF pancreatic progenitor cell differentiation and proliferation factor -0.0256031
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.0254283
B2M beta-2-microglobulin -0.0251671
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0250857
SPTBN1 spectrin, beta, non-erythrocytic 1 -0.025014
TNFRSF21 tumor necrosis factor receptor superfamily, member 21 -0.024509
NDRG1 N-myc downstream regulated 1 -0.0244897
TM4SF1 transmembrane 4 L six family member 1 -0.0243852
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0234308
NCEH1 neutral cholesterol ester hydrolase 1 -0.023215
UBE2H ubiquitin-conjugating enzyme E2H -0.0228614
SPINT2 serine peptidase inhibitor, Kunitz type, 2 -0.0227874
ATP11A ATPase, class VI, type 11A -0.0226335
EIF4A2 eukaryotic translation initiation factor 4A2 -0.0224305
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 -0.0222997
TMC5 transmembrane channel-like 5 -0.0221949
ATF5 activating transcription factor 5 -0.0221898
ASPH aspartate beta-hydroxylase -0.0218953
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 -0.0215801
ATRX alpha thalassemia/mental retardation syndrome X-linked -0.0215487
ATF7IP2 activating transcription factor 7 interacting protein 2 -0.0210806
RBM47 RNA binding motif protein 47 -0.0209263
GPX2 glutathione peroxidase 2 -0.020747
RNF213 ring finger protein 213 -0.0206891
ITGA6 integrin, alpha 6 -0.0204723
CEACAM5 carcinoembryonic antigen-related cell adhesion molecule 5 -0.0204632
SEPTIN9 septin 9 -0.0204414
EPCAM epithelial cell adhesion molecule -0.0203516
YAP1 Yes-associated protein 1 -0.0202487
LRRTM4 leucine rich repeat transmembrane neuronal 4 -0.0200947
RNF43 ring finger protein 43 -0.0197778
CBX3 chromobox homolog 3 -0.0195652
PDIA3 protein disulfide isomerase family A, member 3 -0.0193989
KLF3 Kruppel-like factor 3 (basic) -0.0191518
KRT19 keratin 19, type I -0.0190092
BPTF bromodomain PHD finger transcription factor -0.0190023
ID1 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein -0.0187909
RPLP1 ribosomal protein, large, P1 -0.0185912
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 -0.018551
H3-3B H3.3 histone B -0.018411
S100A9 S100 calcium binding protein A9 -0.018389
POTEF POTE ankyrin domain family, member F -0.0182013
SPIDR scaffolding protein involved in DNA repair -0.0181677
ANXA11 annexin A11 -0.018006
TBC1D5 TBC1 domain family, member 5 -0.0179096
ACSL1 acyl-CoA synthetase long-chain family member 1 -0.0178702
SHB Src homology 2 domain containing adaptor protein B -0.0178026
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0177798
TFF2 trefoil factor 2 -0.017709
PRELID2 PRELI domain containing 2 -0.0176733
RPL23 ribosomal protein L23 -0.0176628
AVL9 AVL9 homolog (S. cerevisiase) -0.0175331
ITGB4 integrin, beta 4 -0.0175248
ACTR2 ARP2 actin-related protein 2 homolog (yeast) -0.0175242
S100A10 S100 calcium binding protein A10 -0.0174698
TC2N tandem C2 domains, nuclear -0.0174376
JUP junction plakoglobin -0.0172867
TNS4 tensin 4 -0.0172454
LIMA1 LIM domain and actin binding 1 -0.017191
IER3 immediate early response 3 -0.0171596
LIPH lipase, member H -0.0171068
DPY19L1 dpy-19-like 1 (C. elegans) -0.0170507
TMEM45B transmembrane protein 45B -0.0170454
ALCAM activated leukocyte cell adhesion molecule -0.01696
ITPKC inositol-trisphosphate 3-kinase C -0.0169293
GSK3B glycogen synthase kinase 3 beta -0.0168439