Talc_SW 1088 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Talc perturbation in SW 1088 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Talc_SW 1088 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
TGFBI transforming growth factor, beta-induced, 68kDa 0.140183
TRIO trio Rho guanine nucleotide exchange factor 0.117724
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0706001
IL6 interleukin 6 0.0699791
ZBTB20 zinc finger and BTB domain containing 20 0.0698904
PDE4D phosphodiesterase 4D, cAMP-specific 0.0679697
B2M beta-2-microglobulin 0.0656795
PRELID2 PRELI domain containing 2 0.0603878
TNIP1 TNFAIP3 interacting protein 1 0.0596289
EFNA5 ephrin-A5 0.0584305
ZMYND8 zinc finger, MYND-type containing 8 0.0555007
IGFBP7 insulin-like growth factor binding protein 7 0.0553787
KYNU kynureninase 0.0529721
CAVIN1 caveolae associated protein 1 0.0495306
ZSWIM6 zinc finger, SWIM-type containing 6 0.0487834
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats 0.0459316
PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 0.0453489
FMNL2 formin-like 2 0.0451594
TMEM165 transmembrane protein 165 0.0446858
ZC3HAV1 zinc finger CCCH-type, antiviral 1 0.0446268
TENT5A terminal nucleotidyltransferase 5A 0.0430173
OXSR1 oxidative stress responsive 1 0.0416637
PRRC2C proline-rich coiled-coil 2C 0.0408217
SPARC secreted protein, acidic, cysteine-rich (osteonectin) 0.0395227
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) 0.0390008
WNK1 WNK lysine deficient protein kinase 1 0.0385605
PRKRIP1 PRKR interacting protein 1 (IL11 inducible) 0.0378934
PSME4 proteasome (prosome, macropain) activator subunit 4 0.037766
DCN decorin 0.0375209
RAI14 retinoic acid induced 14 0.0371619
MBNL1 muscleblind-like splicing regulator 1 0.0367839
RPL26 ribosomal protein L26 0.0363499
ETV6 ets variant 6 0.0362122
CSNK1A1 casein kinase 1, alpha 1 0.0357433
SLC25A37 solute carrier family 25 (mitochondrial iron transporter), member 37 0.0350708
MBD5 methyl-CpG binding domain protein 5 0.0346919
RAB1A RAB1A, member RAS oncogene family 0.0345908
ZEB2 zinc finger E-box binding homeobox 2 0.0339362
CBFA2T2 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 0.0333212
PDIA5 protein disulfide isomerase family A, member 5 0.0331941
ANKRD17 ankyrin repeat domain 17 0.0330963
TMF1 TATA element modulatory factor 1 0.0329389
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0325078
FBXL7 F-box and leucine-rich repeat protein 7 0.0322777
STK17A serine/threonine kinase 17a 0.0317216
HIPK2 homeodomain interacting protein kinase 2 0.0314644
OSBPL3 oxysterol binding protein-like 3 0.0314485
GLIS3 GLIS family zinc finger 3 0.0313017
SAMD4A sterile alpha motif domain containing 4A 0.0300498
PTPRJ protein tyrosine phosphatase, receptor type, J 0.0297821
FAM13A family with sequence similarity 13, member A 0.0297768
SERINC3 serine incorporator 3 0.029493
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 0.029236
DSCAM Down syndrome cell adhesion molecule 0.0291445
TNS3 tensin 3 0.0291125
STC1 stanniocalcin 1 0.0290993
KAZN kazrin, periplakin interacting protein 0.0290755
NALF1 NALCN channel auxiliary factor 1 0.0290035
MICAL2 microtubule associated monooxygenase, calponin and LIM domain containing 2 0.029003
IGF2 insulin-like growth factor 2 0.028967
HLA-A major histocompatibility complex, class I, A 0.028939
PIBF1 progesterone immunomodulatory binding factor 1 0.0289071
STX12 syntaxin 12 0.0288904
SOX5 SRY (sex determining region Y)-box 5 0.0288132
AKAP9 A kinase (PRKA) anchor protein 9 0.0286366
PALLD palladin, cytoskeletal associated protein 0.0285931
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 0.0284409
NKTR natural killer cell triggering receptor 0.0283985
TBC1D23 TBC1 domain family, member 23 0.0283085
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.0282625
PALM2AKAP2 PALM2 and AKAP2 fusion 0.028216
CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) 0.0280942
WASL Wiskott-Aldrich syndrome-like 0.0280315
RPS5 ribosomal protein S5 0.0279284
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) 0.0276418
SLC35F5 solute carrier family 35, member F5 0.0273024
GSDME gasdermin E 0.0272177
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 0.0271977
SP100 SP100 nuclear antigen 0.0271684
DDIT4 DNA-damage-inducible transcript 4 0.027014
NAMPT nicotinamide phosphoribosyltransferase 0.0268816
BET1 Bet1 golgi vesicular membrane trafficking protein 0.0268157
PID1 phosphotyrosine interaction domain containing 1 0.0267066
SSBP1 single-stranded DNA binding protein 1, mitochondrial 0.0266324
BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 0.026565
UBE2D3 ubiquitin-conjugating enzyme E2D 3 0.0265021
HMBOX1 homeobox containing 1 0.0262665
ARID5B AT rich interactive domain 5B (MRF1-like) 0.0260982
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0259684
ATG14 autophagy related 14 0.0258281
UBE2E1 ubiquitin-conjugating enzyme E2E 1 0.0256393
JAK1 Janus kinase 1 0.0255852
CSF1 colony stimulating factor 1 (macrophage) 0.0255196
G3BP2 GTPase activating protein (SH3 domain) binding protein 2 0.0253938
PRKD3 protein kinase D3 0.0251623
THRAP3 thyroid hormone receptor associated protein 3 0.02502
NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 0.0249514
PTGES2 prostaglandin E synthase 2 0.0248814
KIF4A kinesin family member 4A 0.0247682
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 0.0247183

decreased expression

Symbol Name Standardized Value
COL6A3 collagen, type VI, alpha 3 -0.223151
IGFBP3 insulin-like growth factor binding protein 3 -0.194839
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.17618
NDRG1 N-myc downstream regulated 1 -0.123297
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.106492
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0990723
MEF2A myocyte enhancer factor 2A -0.0861085
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0836984
FN1 fibronectin 1 -0.0770337
LOC112694756 uncharaterized LOC112694756 -0.0672128
LOX lysyl oxidase -0.0664826
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.0619754
HILPDA hypoxia inducible lipid droplet-associated -0.0576856
POTEF POTE ankyrin domain family, member F -0.0570646
COL1A2 collagen, type I, alpha 2 -0.0563435
ZNF395 zinc finger protein 395 -0.0552843
COL6A1 collagen, type VI, alpha 1 -0.052558
RTN4 reticulon 4 -0.0524475
LGALS3 lectin, galactoside-binding, soluble, 3 -0.0501294
KMT2C lysine (K)-specific methyltransferase 2C -0.049844
ZNF292 zinc finger protein 292 -0.0485567
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0469123
KMT2E lysine (K)-specific methyltransferase 2E -0.0467388
FTH1 ferritin, heavy polypeptide 1 -0.0465554
ELL2 elongation factor, RNA polymerase II, 2 -0.0453479
VEGFA vascular endothelial growth factor A -0.0449318
CALR calreticulin -0.0446547
PKM pyruvate kinase, muscle -0.0446312
EGR1 early growth response 1 -0.0440023
MYH9 myosin, heavy chain 9, non-muscle -0.0423682
HOOK2 hook microtubule-tethering protein 2 -0.040352
TPM1 tropomyosin 1 (alpha) -0.0396348
PDIA6 protein disulfide isomerase family A, member 6 -0.0395117
ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) -0.0392784
COPB2 coatomer protein complex, subunit beta 2 (beta prime) -0.0385247
PDIA3 protein disulfide isomerase family A, member 3 -0.0380315
ENO1 enolase 1, (alpha) -0.0379923
PDPK1 3-phosphoinositide dependent protein kinase 1 -0.0370672
ANXA2 annexin A2 -0.0364254
CRLS1 cardiolipin synthase 1 -0.0359035
ESCO1 establishment of sister chromatid cohesion N-acetyltransferase 1 -0.0357556
LUC7L2 LUC7-like 2 (S. cerevisiae) -0.0346099
SETD5 SET domain containing 5 -0.0344277
LDHA lactate dehydrogenase A -0.0344081
PDIA4 protein disulfide isomerase family A, member 4 -0.0329218
CADM1 cell adhesion molecule 1 -0.0328485
RPL28 ribosomal protein L28 -0.0328096
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0327735
MARCHF6 membrane associated ring-CH-type finger 6 -0.0326644
CCNL1 cyclin L1 -0.0326527
SSBP2 single-stranded DNA binding protein 2 -0.0322938
MORF4L2 mortality factor 4 like 2 -0.0320129
LUC7L3 LUC7-like 3 (S. cerevisiae) -0.0316845
ACBD3 acyl-CoA binding domain containing 3 -0.0316641
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase -0.031334
TNNC1 troponin C type 1 (slow) -0.0310942
SLC6A6 solute carrier family 6 (neurotransmitter transporter), member 6 -0.0306404
ALCAM activated leukocyte cell adhesion molecule -0.0304699
ATP1A4 ATPase, Na+/K+ transporting, alpha 4 polypeptide -0.0303944
CLIC4 chloride intracellular channel 4 -0.0293724
TMEM123 transmembrane protein 123 -0.0292299
MAP1B microtubule-associated protein 1B -0.0290726
TMSB10 thymosin beta 10 -0.0289128
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0287835
TNPO1 transportin 1 -0.0285981
SYNPO synaptopodin -0.0285637
ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) -0.0284278
SPAG9 sperm associated antigen 9 -0.0280685
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0278716
ATP6AP2 ATPase, H+ transporting, lysosomal accessory protein 2 -0.027574
PAICS phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase -0.027388
HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) -0.0272666
MAP3K13 mitogen-activated protein kinase kinase kinase 13 -0.0270128
CDK7 cyclin-dependent kinase 7 -0.0269942
CNOT4 CCR4-NOT transcription complex, subunit 4 -0.0269776
CCDC47 coiled-coil domain containing 47 -0.0268271
FRMD6 FERM domain containing 6 -0.0262767
DPY19L1 dpy-19-like 1 (C. elegans) -0.0262139
FAM162A family with sequence similarity 162, member A -0.0262081
CDK6 cyclin-dependent kinase 6 -0.0261866
SND1 staphylococcal nuclease and tudor domain containing 1 -0.0261454
CLIP2 CAP-GLY domain containing linker protein 2 -0.0259224
CAV1 caveolin 1, caveolae protein, 22kDa -0.0258305
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 -0.0254986
TXNDC11 thioredoxin domain containing 11 -0.0254446
PGK1 phosphoglycerate kinase 1 -0.0254403
AAK1 AP2 associated kinase 1 -0.0253365
CAPN2 calpain 2, (m/II) large subunit -0.0253183
ID2 inhibitor of DNA binding 2, dominant negative helix-loop-helix protein -0.0252089
EIF4A2 eukaryotic translation initiation factor 4A2 -0.025177
COPB1 coatomer protein complex, subunit beta 1 -0.025092
HDLBP high density lipoprotein binding protein -0.0249753
UBN1 ubinuclein 1 -0.0249612
ITM2B integral membrane protein 2B -0.0249216
CAPZA2 capping protein (actin filament) muscle Z-line, alpha 2 -0.0248137
UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative) -0.0247636
MORF4L1 mortality factor 4 like 1 -0.0245322
NSMCE2 non-SMC element 2, MMS21 homolog (S. cerevisiae) -0.0245305
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 -0.0244378
EIF3D eukaryotic translation initiation factor 3, subunit D -0.0244097