Talc_SW 1271 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Talc perturbation in SW 1271 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Talc_SW 1271 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
YBX3 Y box binding protein 3 0.0763934
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0733806
NAP1L1 nucleosome assembly protein 1-like 1 0.0671037
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa 0.0610272
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0570993
ANKRD28 ankyrin repeat domain 28 0.0485915
BIRC3 baculoviral IAP repeat containing 3 0.0471606
DERA deoxyribose-phosphate aldolase (putative) 0.0468889
FTH1 ferritin, heavy polypeptide 1 0.045837
IGFBP3 insulin-like growth factor binding protein 3 0.045188
EIF2S2 eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa 0.0451663
BASP1 brain abundant, membrane attached signal protein 1 0.0451406
SMC5 structural maintenance of chromosomes 5 0.0438388
CXCL8 chemokine (C-X-C motif) ligand 8 0.0428639
PHLDB2 pleckstrin homology-like domain, family B, member 2 0.0425495
TOP2A topoisomerase (DNA) II alpha 170kDa 0.04048
RPS3 ribosomal protein S3 0.0402992
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0380125
MYO9A myosin IXA 0.0361395
GIGYF2 GRB10 interacting GYF protein 2 0.0339703
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0326407
MBNL1 muscleblind-like splicing regulator 1 0.0321742
MCTP1 multiple C2 domains, transmembrane 1 0.0302449
CALU calumenin 0.0293673
KIAA1958 KIAA1958 0.0290704
RTN4 reticulon 4 0.0289548
PCBP2 poly(rC) binding protein 2 0.0281036
PRKDC protein kinase, DNA-activated, catalytic polypeptide 0.0279092
ATP11B ATPase, class VI, type 11B 0.027488
DST dystonin 0.0274179
RAB2A RAB2A, member RAS oncogene family 0.0272169
PRPF8 pre-mRNA processing factor 8 0.0271878
SRRM2 serine/arginine repetitive matrix 2 0.0259224
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.02554
NR4A3 nuclear receptor subfamily 4, group A, member 3 0.0247856
H1-0 H1.0 linker histone 0.0247086
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0245529
PALM2AKAP2 PALM2 and AKAP2 fusion 0.0245132
SCAF8 SR-related CTD-associated factor 8 0.0241497
PHIP pleckstrin homology domain interacting protein 0.0239545
CDK6 cyclin-dependent kinase 6 0.0238981
EIF4A1 eukaryotic translation initiation factor 4A1 0.0237724
WAC WW domain containing adaptor with coiled-coil 0.0235463
ARID2 AT rich interactive domain 2 (ARID, RFX-like) 0.0230962
BRAF B-Raf proto-oncogene, serine/threonine kinase 0.0227009
RBM27 RNA binding motif protein 27 0.0226544
PJA2 praja ring finger 2, E3 ubiquitin protein ligase 0.0225921
DPYD dihydropyrimidine dehydrogenase 0.0222446
USP9X ubiquitin specific peptidase 9, X-linked 0.0221569
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0220142
CTNNAL1 catenin (cadherin-associated protein), alpha-like 1 0.0217798
EXOC6B exocyst complex component 6B 0.0217554
SEC16A SEC16 homolog A (S. cerevisiae) 0.0217383
PICALM phosphatidylinositol binding clathrin assembly protein 0.0215831
PTPN14 protein tyrosine phosphatase, non-receptor type 14 0.0215095
ANTXR2 anthrax toxin receptor 2 0.0212648
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0211845
ATP13A3 ATPase type 13A3 0.0211709
BCLAF1 BCL2-associated transcription factor 1 0.0211286
CCNL1 cyclin L1 0.0210963
CSNK1A1 casein kinase 1, alpha 1 0.0210186
NCOA6 nuclear receptor coactivator 6 0.0209053
CHD1 chromodomain helicase DNA binding protein 1 0.0208506
TENT2 terminal nucleotidyltransferase 2 0.0208274
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0204559
SEC62 SEC62 homolog (S. cerevisiae) 0.0203832
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0202896
HMG20A high mobility group 20A 0.0200774
CCNT2 cyclin T2 0.0200571
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.0200416
TTBK2 tau tubulin kinase 2 0.0199309
NAMPT nicotinamide phosphoribosyltransferase 0.0199218
ACTG1 actin gamma 1 0.019897
MAP2K5 mitogen-activated protein kinase kinase 5 0.0198795
TRIM38 tripartite motif containing 38 0.0198765
UBE2B ubiquitin-conjugating enzyme E2B 0.0198713
MED13L mediator complex subunit 13-like 0.019814
ZNF292 zinc finger protein 292 0.019804
NPTN neuroplastin 0.0197367
PRRC2B proline-rich coiled-coil 2B 0.0196813
RPN2 ribophorin II 0.0195442
SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 0.0194698
PRKCE protein kinase C, epsilon 0.0193255
CLINT1 clathrin interactor 1 0.0192693
FBXW7 F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase 0.0192114
MCM8 minichromosome maintenance complex component 8 0.0191759
NPAT nuclear protein, ataxia-telangiectasia locus 0.0191027
SBNO1 strawberry notch homolog 1 (Drosophila) 0.0189774
MTMR14 myotubularin related protein 14 0.0189605
TPR translocated promoter region, nuclear basket protein 0.0186853
POT1 protection of telomeres 1 0.0185238
CDC5L cell division cycle 5-like 0.018468
LDLR low density lipoprotein receptor 0.0184336
TXNRD1 thioredoxin reductase 1 0.0183762
SH3GL3 SH3-domain GRB2-like 3 0.0183663
CASP8AP2 caspase 8 associated protein 2 0.0183621
RUNX1 runt-related transcription factor 1 0.0183593
ZNF652 zinc finger protein 652 0.0182499
FAR1 fatty acyl CoA reductase 1 0.0179847
HSDL2 hydroxysteroid dehydrogenase like 2 0.017965

decreased expression

Symbol Name Standardized Value
MT2A metallothionein 2A -0.0859421
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0789077
WSB1 WD repeat and SOCS box containing 1 -0.0559196
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0520966
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.048919
PKM pyruvate kinase, muscle -0.0463506
FTL ferritin, light polypeptide -0.0456885
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0431249
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 -0.0414351
TMSB10 thymosin beta 10 -0.0401614
HILPDA hypoxia inducible lipid droplet-associated -0.0393517
RPS13 ribosomal protein S13 -0.0386028
FNDC3B fibronectin type III domain containing 3B -0.0385862
RAB1A RAB1A, member RAS oncogene family -0.036773
ZSWIM6 zinc finger, SWIM-type containing 6 -0.034689
RPL35A ribosomal protein L35a -0.0339231
NAV2 neuron navigator 2 -0.0332105
RNF213 ring finger protein 213 -0.0324844
VIM vimentin -0.0318328
PDGFA platelet-derived growth factor alpha polypeptide -0.0310842
NCEH1 neutral cholesterol ester hydrolase 1 -0.0310806
UBE2E1 ubiquitin-conjugating enzyme E2E 1 -0.0309456
TAOK3 TAO kinase 3 -0.0306844
RPS29 ribosomal protein S29 -0.0306639
HMGA2 high mobility group AT-hook 2 -0.0302643
RAI14 retinoic acid induced 14 -0.0301
CCNH cyclin H -0.0298162
IER3 immediate early response 3 -0.0293057
TPT1 tumor protein, translationally-controlled 1 -0.0292501
RAP1B RAP1B, member of RAS oncogene family -0.0284099
PRKCA protein kinase C, alpha -0.0282258
RPL37A ribosomal protein L37a -0.0278407
ARMH4 armadillo like helical domain containing 4 -0.0276919
NFE2L2 nuclear factor, erythroid 2-like 2 -0.0275724
RPS27A ribosomal protein S27a -0.0274819
DHX34 DEAH (Asp-Glu-Ala-His) box polypeptide 34 -0.0273512
INTS6 integrator complex subunit 6 -0.0273034
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 -0.0268905
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0267748
SDCBP syndecan binding protein (syntenin) -0.0263735
DDX24 DEAD (Asp-Glu-Ala-Asp) box helicase 24 -0.0256977
ARID4B AT rich interactive domain 4B (RBP1-like) -0.0256587
MYO9B myosin IXB -0.0256265
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.025593
ZBTB1 zinc finger and BTB domain containing 1 -0.0252238
FRMD6 FERM domain containing 6 -0.0251225
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0249924
MATR3 matrin 3 -0.0247624
RPL38 ribosomal protein L38 -0.0247383
PODXL podocalyxin-like -0.0242296
UBE2Z ubiquitin-conjugating enzyme E2Z -0.0239358
DYNLRB1 dynein, light chain, roadblock-type 1 -0.0238489
SPATS2L spermatogenesis associated, serine-rich 2-like -0.0238063
DCAF7 DDB1 and CUL4 associated factor 7 -0.0234288
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.023274
RPL7A ribosomal protein L7a -0.0230534
SH3KBP1 SH3-domain kinase binding protein 1 -0.0228125
SEMA4B sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B -0.0228005
SLC25A37 solute carrier family 25 (mitochondrial iron transporter), member 37 -0.0226642
CCND1 cyclin D1 -0.0226045
FAM177A1 family with sequence similarity 177, member A1 -0.0225058
ANKLE2 ankyrin repeat and LEM domain containing 2 -0.0224295
RERE arginine-glutamic acid dipeptide (RE) repeats -0.022338
LGALS1 lectin, galactoside-binding, soluble, 1 -0.0220943
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0218017
RPS11 ribosomal protein S11 -0.0216093
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0210483
PRG2 proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) -0.0207322
GPC5 glypican 5 -0.020688
LRCH3 leucine-rich repeats and calponin homology (CH) domain containing 3 -0.0204768
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0203736
RPL19 ribosomal protein L19 -0.0203454
LOC112694756 uncharaterized LOC112694756 -0.02021
TAOK1 TAO kinase 1 -0.0200631
CREBBP CREB binding protein -0.0199687
GALNT2 polypeptide N-acetylgalactosaminyltransferase 2 -0.0199356
MARCHF7 membrane associated ring-CH-type finger 7 -0.0199354
ASPH aspartate beta-hydroxylase -0.0198227
B2M beta-2-microglobulin -0.0197751
CDC42SE2 CDC42 small effector 2 -0.0194834
USP36 ubiquitin specific peptidase 36 -0.0194488
LUC7L2 LUC7-like 2 (S. cerevisiae) -0.0194077
RNF145 ring finger protein 145 -0.0192778
ZNF609 zinc finger protein 609 -0.0192569
PRSS23 protease, serine, 23 -0.0191993
RPL31 ribosomal protein L31 -0.0191697
TBCA tubulin folding cofactor A -0.0191525
LARP4B La ribonucleoprotein domain family, member 4B -0.0189384
S100A9 S100 calcium binding protein A9 -0.018913
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 -0.0188498
AAGAB alpha- and gamma-adaptin binding protein -0.0186666
ITFG2 integrin alpha FG-GAP repeat containing 2 -0.0185496
FERMT2 fermitin family member 2 -0.0183862
FBXO11 F-box protein 11 -0.0183669
VDAC1 voltage-dependent anion channel 1 -0.0182529
PMEPA1 prostate transmembrane protein, androgen induced 1 -0.0181748
FRYL FRY-like -0.0181582
ATG7 autophagy related 7 -0.0181245
PCNX2 pecanex 2 -0.018078
TPX2 TPX2, microtubule-associated -0.0180474