Talc_SW 900 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Talc perturbation in SW 900 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Talc_SW 900 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FTH1 ferritin, heavy polypeptide 1 0.189911
GOLGA4 golgin A4 0.063917
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0600663
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 0.0550836
NAMPT nicotinamide phosphoribosyltransferase 0.0529945
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0519812
ANKRD28 ankyrin repeat domain 28 0.0516549
SEC31A SEC31 homolog A (S. cerevisiae) 0.0499236
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0447258
TPR translocated promoter region, nuclear basket protein 0.0426963
CDC73 cell division cycle 73 0.0422267
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 0.0420875
AKAP9 A kinase (PRKA) anchor protein 9 0.0414798
EXT1 exostosin glycosyltransferase 1 0.0409812
PUM2 pumilio RNA-binding family member 2 0.0390682
COG5 component of oligomeric golgi complex 5 0.0390664
BIRC6 baculoviral IAP repeat containing 6 0.0381844
ETNK1 ethanolamine kinase 1 0.0378019
RNF145 ring finger protein 145 0.0375872
OGA O-GlcNAcase 0.0373565
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.0369107
SEC23A Sec23 homolog A (S. cerevisiae) 0.0368608
PSME4 proteasome (prosome, macropain) activator subunit 4 0.0364243
ACBD3 acyl-CoA binding domain containing 3 0.0353832
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0348523
CSDE1 cold shock domain containing E1, RNA-binding 0.0343821
WAC WW domain containing adaptor with coiled-coil 0.0342308
SUCO SUN domain containing ossification factor 0.0338475
PCBP2 poly(rC) binding protein 2 0.0335807
FAM13A family with sequence similarity 13, member A 0.0333323
HS2ST1 heparan sulfate 2-O-sulfotransferase 1 0.0326342
ZNRF1 zinc and ring finger 1, E3 ubiquitin protein ligase 0.0323379
CEP350 centrosomal protein 350kDa 0.0322637
PRRC2C proline-rich coiled-coil 2C 0.0319968
DOCK5 dedicator of cytokinesis 5 0.0307872
FNDC3B fibronectin type III domain containing 3B 0.0305886
TMF1 TATA element modulatory factor 1 0.0303283
COPA coatomer protein complex, subunit alpha 0.0303105
RB1CC1 RB1-inducible coiled-coil 1 0.0300088
TTC3 tetratricopeptide repeat domain 3 0.029783
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0297165
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 0.0288371
NEK7 NIMA-related kinase 7 0.0287117
SIPA1L1 signal-induced proliferation-associated 1 like 1 0.0283786
RICTOR RPTOR independent companion of MTOR, complex 2 0.0283618
MCTP2 multiple C2 domains, transmembrane 2 0.0282482
KMT2C lysine (K)-specific methyltransferase 2C 0.0276275
CLINT1 clathrin interactor 1 0.0276186
RBM25 RNA binding motif protein 25 0.027434
MAP3K9 mitogen-activated protein kinase kinase kinase 9 0.0273506
RUNX2 runt-related transcription factor 2 0.0273292
CAB39 calcium binding protein 39 0.0271758
ZNF292 zinc finger protein 292 0.0269214
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.0269108
FHIP1A FHF complex subunit HOOK interacting protein 1A 0.0266243
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 0.0265658
HELZ helicase with zinc finger 0.026439
SRP54 signal recognition particle 54kDa 0.0262572
HDLBP high density lipoprotein binding protein 0.0260586
CD44 CD44 molecule (Indian blood group) 0.0255771
TENT2 terminal nucleotidyltransferase 2 0.0255671
RNF24 ring finger protein 24 0.0255087
MON2 MON2 homolog (S. cerevisiae) 0.0253368
CTNND1 catenin (cadherin-associated protein), delta 1 0.0253071
EIF2AK3 eukaryotic translation initiation factor 2-alpha kinase 3 0.0252758
SIK3 SIK family kinase 3 0.0252586
ZFR zinc finger RNA binding protein 0.0250647
CENPF centromere protein F, 350/400kDa 0.0250182
YME1L1 YME1-like 1 ATPase 0.0245167
PPP1CB protein phosphatase 1, catalytic subunit, beta isozyme 0.024234
KMT2E lysine (K)-specific methyltransferase 2E 0.0239871
RPS2 ribosomal protein S2 0.0237987
SMURF1 SMAD specific E3 ubiquitin protein ligase 1 0.0234955
FOXO3 forkhead box O3 0.0234424
PELI1 pellino E3 ubiquitin protein ligase 1 0.0230627
MAP3K2 mitogen-activated protein kinase kinase kinase 2 0.0228615
AHR aryl hydrocarbon receptor 0.0227469
CLTC clathrin, heavy chain (Hc) 0.0227184
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.0226082
GPCPD1 glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) 0.0225352
GCC2 GRIP and coiled-coil domain containing 2 0.0224441
PRPF8 pre-mRNA processing factor 8 0.0224179
SEC24A SEC24 family member A 0.0220661
ANKRD17 ankyrin repeat domain 17 0.0219917
WDR26 WD repeat domain 26 0.0219554
ARID4B AT rich interactive domain 4B (RBP1-like) 0.0218013
MAPKAPK2 mitogen-activated protein kinase-activated protein kinase 2 0.0210794
CUL3 cullin 3 0.0207949
AFDN afadin, adherens junction formation factor 0.02079
ZC3H11A zinc finger CCCH-type containing 11A 0.0206107
KSR1 kinase suppressor of ras 1 0.0205983
TGFBR2 transforming growth factor, beta receptor II (70/80kDa) 0.0203062
TMEM39A transmembrane protein 39A 0.0201659
MNAT1 MNAT CDK-activating kinase assembly factor 1 0.0200905
SNX13 sorting nexin 13 0.0198277
KCNK1 potassium channel, two pore domain subfamily K, member 1 0.0198055
BCLAF1 BCL2-associated transcription factor 1 0.0197926
RO60 Ro60, Y RNA binding protein 0.0197404
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 0.0195555
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 0.0195422

decreased expression

Symbol Name Standardized Value
NRG1 neuregulin 1 -0.253026
FN1 fibronectin 1 -0.197877
HMGA2 high mobility group AT-hook 2 -0.134139
CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 -0.132663
ASPH aspartate beta-hydroxylase -0.120909
TMSB10 thymosin beta 10 -0.0868129
IFI27 interferon, alpha-inducible protein 27 -0.0797069
HLA-B major histocompatibility complex, class I, B -0.0791393
STC2 stanniocalcin 2 -0.0764691
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0682374
PTMA prothymosin, alpha -0.06614
ITGA1 integrin, alpha 1 -0.0648369
SQSTM1 sequestosome 1 -0.0614307
TMSB4X thymosin beta 4, X-linked -0.0611676
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.0596778
TPT1 tumor protein, translationally-controlled 1 -0.0573425
RAI14 retinoic acid induced 14 -0.0563182
SYT1 synaptotagmin I -0.0557422
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.050873
S100A6 S100 calcium binding protein A6 -0.0503939
TMEM156 transmembrane protein 156 -0.0502242
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.0502017
FTL ferritin, light polypeptide -0.0500956
PKM pyruvate kinase, muscle -0.0496539
SOX4 SRY (sex determining region Y)-box 4 -0.0494028
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0491801
DNAH5 dynein, axonemal, heavy chain 5 -0.0481919
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) -0.0447086
LIMCH1 LIM and calponin homology domains 1 -0.0426574
IER3 immediate early response 3 -0.0421665
ACTG1 actin gamma 1 -0.0418898
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.0413301
AEBP2 AE binding protein 2 -0.0400627
MRPS6 mitochondrial ribosomal protein S6 -0.0393863
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.039369
INTS6 integrator complex subunit 6 -0.0391426
B2M beta-2-microglobulin -0.0390193
GLIS3 GLIS family zinc finger 3 -0.0387808
SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 -0.0374734
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0360581
EGR1 early growth response 1 -0.035043
VIM vimentin -0.0336502
VCL vinculin -0.0329216
SLC35F3 solute carrier family 35, member F3 -0.0323359
CTSD cathepsin D -0.0320973
LOC102724023 ES1 protein homolog, mitochondrial -0.0320044
RPL31 ribosomal protein L31 -0.0314982
TM4SF1 transmembrane 4 L six family member 1 -0.0309014
RPL38 ribosomal protein L38 -0.0307115
TFPI2 tissue factor pathway inhibitor 2 -0.0307033
HMGA1 high mobility group AT-hook 1 -0.0306345
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0304145
SFTPA2 surfactant protein A2 -0.0302582
IFI6 interferon, alpha-inducible protein 6 -0.0296784
ETV1 ets variant 1 -0.0291066
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0285294
S100A10 S100 calcium binding protein A10 -0.0283091
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 -0.0280176
SLC38A2 solute carrier family 38, member 2 -0.0279974
PALLD palladin, cytoskeletal associated protein -0.0278046
AKAP12 A kinase (PRKA) anchor protein 12 -0.0275238
KLHL5 kelch-like family member 5 -0.0273943
BPTF bromodomain PHD finger transcription factor -0.0272399
TENM4 teneurin transmembrane protein 4 -0.0269533
BICD1 bicaudal D homolog 1 (Drosophila) -0.0269191
TPM4 tropomyosin 4 -0.0266204
UBC ubiquitin C -0.0259846
IFI44L interferon-induced protein 44-like -0.0256783
ENO1 enolase 1, (alpha) -0.0251854
S100A9 S100 calcium binding protein A9 -0.0250544
PDE4D phosphodiesterase 4D, cAMP-specific -0.0249432
ZBTB20 zinc finger and BTB domain containing 20 -0.0248389
TRIO trio Rho guanine nucleotide exchange factor -0.0247144
CADM1 cell adhesion molecule 1 -0.0243493
SOX5 SRY (sex determining region Y)-box 5 -0.0243261
TSHZ2 teashirt zinc finger homeobox 2 -0.0242588
VEGFA vascular endothelial growth factor A -0.02414
CALR calreticulin -0.0239793
GRB10 growth factor receptor-bound protein 10 -0.0237697
CAPN2 calpain 2, (m/II) large subunit -0.0235792
MLPH melanophilin -0.0229205
SFRP1 secreted frizzled-related protein 1 -0.0228721
NFE2L2 nuclear factor, erythroid 2-like 2 -0.0227103
ENO2 enolase 2 (gamma, neuronal) -0.022569
AHNAK AHNAK nucleoprotein -0.0225488
SEMA4A sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A -0.0224352
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.0222208
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0221691
RPS21 ribosomal protein S21 -0.0218634
RNF213 ring finger protein 213 -0.0216507
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0215858
PTK2 protein tyrosine kinase 2 -0.0215766
LOXL2 lysyl oxidase-like 2 -0.0215718
ZFP36L1 ZFP36 ring finger protein-like 1 -0.0215055
CCND1 cyclin D1 -0.0214523
TSC22D1 TSC22 domain family, member 1 -0.0214089
KRT19 keratin 19, type I -0.0210453
RPL35A ribosomal protein L35a -0.0208989
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0208637
LRMDA leucine rich melanocyte differentiation associated -0.0208003