Thymol_NCI-H460 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Thymol perturbation in NCI-H460 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Thymol_NCI-H460 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) 0.271162
FN1 fibronectin 1 0.170998
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.101126
IGFBP3 insulin-like growth factor binding protein 3 0.0953021
FNDC3A fibronectin type III domain containing 3A 0.0928259
STC1 stanniocalcin 1 0.081869
PDLIM5 PDZ and LIM domain 5 0.0802928
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.0747257
VIM vimentin 0.0737025
TNFAIP3 tumor necrosis factor, alpha-induced protein 3 0.0718104
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0715374
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 0.0710605
MAP7 microtubule-associated protein 7 0.0700732
FMNL2 formin-like 2 0.0695913
CHL1 cell adhesion molecule L1-like 0.060308
KYNU kynureninase 0.0582663
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 0.057708
ELL2 elongation factor, RNA polymerase II, 2 0.0532142
ZEB2 zinc finger E-box binding homeobox 2 0.0525333
ESYT2 extended synaptotagmin-like protein 2 0.0492732
P3H2 prolyl 3-hydroxylase 2 0.0489651
PM20D1 peptidase M20 domain containing 1 0.0486778
AKAP13 A kinase (PRKA) anchor protein 13 0.0481818
FTH1 ferritin, heavy polypeptide 1 0.0468836
SMAD2 SMAD family member 2 0.046299
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0456734
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.0442247
SPAG9 sperm associated antigen 9 0.0430662
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0428521
INHBA inhibin, beta A 0.0424867
IL6 interleukin 6 0.0421215
SMOC1 SPARC related modular calcium binding 1 0.0418693
AUTS2 autism susceptibility candidate 2 0.0415326
ITPRID2 ITPR interacting domain containing 2 0.0413515
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.041014
WARS1 tryptophanyl-tRNA synthetase 1 0.0400819
PYGL phosphorylase, glycogen, liver 0.0399185
MCL1 myeloid cell leukemia 1 0.0392441
SLC44A1 solute carrier family 44 (choline transporter), member 1 0.036889
NBEAL1 neurobeachin-like 1 0.0353342
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0342724
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.0341252
GDA guanine deaminase 0.0332792
SOD2 superoxide dismutase 2, mitochondrial 0.0331002
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 0.0330549
CDH13 cadherin 13 0.0326969
RPS6 ribosomal protein S6 0.0321547
DHRSX dehydrogenase/reductase (SDR family) X-linked 0.0319887
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 0.0317076
BMERB1 bMERB domain containing 1 0.0316745
BMP6 bone morphogenetic protein 6 0.0311302
OXSR1 oxidative stress responsive 1 0.0310541
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0308796
ERC2 ELKS/RAB6-interacting/CAST family member 2 0.0307675
COL4A5 collagen, type IV, alpha 5 0.0305397
CTBP2 C-terminal binding protein 2 0.0299672
KMT2E lysine (K)-specific methyltransferase 2E 0.029962
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.0298393
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.029697
DGKD diacylglycerol kinase, delta 130kDa 0.0296394
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 0.029565
NR4A2 nuclear receptor subfamily 4, group A, member 2 0.0294178
NFX1 nuclear transcription factor, X-box binding 1 0.0291667
ADGRD1 adhesion G protein-coupled receptor D1 0.029006
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0288616
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0287985
PRICKLE1 prickle homolog 1 (Drosophila) 0.0285311
AGTPBP1 ATP/GTP binding protein 1 0.0283714
DPP10 dipeptidyl-peptidase 10 (non-functional) 0.0283198
DNER delta/notch-like EGF repeat containing 0.0282893
CUX1 cut-like homeobox 1 0.0282529
COL4A6 collagen, type IV, alpha 6 0.028216
ERRFI1 ERBB receptor feedback inhibitor 1 0.027746
PRKN parkin RBR E3 ubiquitin protein ligase 0.0272926
CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 0.0272339
NPAS2 neuronal PAS domain protein 2 0.0269963
RAB31 RAB31, member RAS oncogene family 0.0265807
CD44 CD44 molecule (Indian blood group) 0.0264489
PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 0.0264434
MKLN1 muskelin 1, intracellular mediator containing kelch motifs 0.0263556
NTN4 netrin 4 0.026335
DOCK5 dedicator of cytokinesis 5 0.026308
EPB41L3 erythrocyte membrane protein band 4.1-like 3 0.025857
FAM107B family with sequence similarity 107, member B 0.0256495
ABLIM1 actin binding LIM protein 1 0.0252146
XYLT1 xylosyltransferase I 0.0250511
CTSL cathepsin L 0.0249987
RAB3B RAB3B, member RAS oncogene family 0.0249689
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0245586
WSB1 WD repeat and SOCS box containing 1 0.0245091
SOX4 SRY (sex determining region Y)-box 4 0.0244452
UNC5D unc-5 homolog D (C. elegans) 0.0239019
COPA coatomer protein complex, subunit alpha 0.0237924
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0237849
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0237168
PLEKHA5 pleckstrin homology domain containing, family A member 5 0.0234646
FLNB filamin B, beta 0.0233246
KTN1 kinectin 1 (kinesin receptor) 0.0233119
CLMP CXADR-like membrane protein 0.0230879
TENM3 teneurin transmembrane protein 3 0.0228678

decreased expression

Symbol Name Standardized Value
ASPH aspartate beta-hydroxylase -0.137676
TMSB10 thymosin beta 10 -0.0912484
TXNRD1 thioredoxin reductase 1 -0.0885577
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase -0.0866269
NRCAM neuronal cell adhesion molecule -0.0722449
EFNA5 ephrin-A5 -0.0674473
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0517448
RPS24 ribosomal protein S24 -0.0508154
TNPO1 transportin 1 -0.0467985
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) -0.0399571
NALF1 NALCN channel auxiliary factor 1 -0.0378991
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0358859
RPL9 ribosomal protein L9 -0.0354207
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 -0.0350213
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0348321
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.03463
NAMPT nicotinamide phosphoribosyltransferase -0.0338051
SMYD3 SET and MYND domain containing 3 -0.0329817
ACTG1 actin gamma 1 -0.031831
EIF4A1 eukaryotic translation initiation factor 4A1 -0.0304539
CENPF centromere protein F, 350/400kDa -0.0301339
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0300169
RPL23 ribosomal protein L23 -0.0293004
CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 -0.0292712
RPS21 ribosomal protein S21 -0.0287385
MYOF myoferlin -0.0286172
SRGN serglycin -0.0286015
DIAPH3 diaphanous-related formin 3 -0.0276708
TPT1 tumor protein, translationally-controlled 1 -0.0270266
ABCC2 ATP-binding cassette, sub-family C (CFTR/MRP), member 2 -0.0270176
PRDX1 peroxiredoxin 1 -0.0259494
AKR1C1 aldo-keto reductase family 1, member C1 -0.0258186
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.0256231
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa -0.024968
ATP5F1B ATP synthase F1 subunit beta -0.0249165
DHX9 DEAH (Asp-Glu-Ala-His) box helicase 9 -0.0243697
RPS4X ribosomal protein S4, X-linked -0.0242692
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 -0.0241379
SLC25A5 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 -0.0241179
RBM39 RNA binding motif protein 39 -0.0234602
FUS FUS RNA binding protein -0.0231829
RPL35A ribosomal protein L35a -0.0223342
ANLN anillin, actin binding protein -0.0221804
AHNAK AHNAK nucleoprotein -0.02179
MT2A metallothionein 2A -0.0211766
SMC4 structural maintenance of chromosomes 4 -0.0206899
TRIO trio Rho guanine nucleotide exchange factor -0.0203412
NEK7 NIMA-related kinase 7 -0.0199387
NAP1L1 nucleosome assembly protein 1-like 1 -0.0195259
EXO1 exonuclease 1 -0.019197
MAN2A1 mannosidase, alpha, class 2A, member 1 -0.0191864
RPL26 ribosomal protein L26 -0.0189861
RRBP1 ribosome binding protein 1 -0.0189347
ANK3 ankyrin 3, node of Ranvier (ankyrin G) -0.0188665
CENPE centromere protein E, 312kDa -0.0184883
SLC25A3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 -0.0183096
OGA O-GlcNAcase -0.0182434
TRA2A transformer 2 alpha homolog (Drosophila) -0.0180177
CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) -0.0179271
SEPTIN10 septin 10 -0.0178804
PNISR PNN-interacting serine/arginine-rich protein -0.0176883
RPL11 ribosomal protein L11 -0.0176083
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa -0.0175951
PALLD palladin, cytoskeletal associated protein -0.0172586
SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 -0.01719
LUC7L3 LUC7-like 3 (S. cerevisiae) -0.0167615
PGK1 phosphoglycerate kinase 1 -0.0167094
WDFY2 WD repeat and FYVE domain containing 2 -0.0166663
RPS27A ribosomal protein S27a -0.0164437
NFIA nuclear factor I/A -0.0162935
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta -0.016292
PIR pirin (iron-binding nuclear protein) -0.016129
SLC25A37 solute carrier family 25 (mitochondrial iron transporter), member 37 -0.0160212
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.016006
TUSC3 tumor suppressor candidate 3 -0.0158793
SFPQ splicing factor proline/glutamine-rich -0.0158288
NIPBL Nipped-B homolog (Drosophila) -0.0157869
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon -0.0154978
TM9SF3 transmembrane 9 superfamily member 3 -0.0154825
MAP1B microtubule-associated protein 1B -0.0152056
RBM25 RNA binding motif protein 25 -0.0150468
RPLP0 ribosomal protein, large, P0 -0.0150282
PCBP3 poly(rC) binding protein 3 -0.0150016
ATP5F1E ATP synthase F1 subunit epsilon -0.0149724
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) -0.0147619
SP3 Sp3 transcription factor -0.0147613
SKP1 S-phase kinase-associated protein 1 -0.0147189
THOC2 THO complex 2 -0.0146829
DDX3X DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked -0.0146592
IFRD1 interferon-related developmental regulator 1 -0.014601
PTGR1 prostaglandin reductase 1 -0.0145565
SAR1A secretion associated, Ras related GTPase 1A -0.0145348
PAN3 PAN3 poly(A) specific ribonuclease subunit -0.0145004
PCNX1 pecanex 1 -0.0144325
PPP3R1 protein phosphatase 3, regulatory subunit B, alpha -0.0143083
METTL15 methyltransferase like 15 -0.0142439
CANX calnexin -0.0141685
RPL38 ribosomal protein L38 -0.0140903
RPH3AL rabphilin 3A-like (without C2 domains) -0.0140586
SHTN1 shootin 1 -0.0139836