Tolcapone_SNU-423 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Tolcapone perturbation in SNU-423 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Tolcapone_SNU-423 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
HDAC9 histone deacetylase 9 0.13136
BICC1 BicC family RNA binding protein 1 0.0783853
FRMD4A FERM domain containing 4A 0.0761176
KYNU kynureninase 0.0737045
ZSWIM6 zinc finger, SWIM-type containing 6 0.0720868
COL6A3 collagen, type VI, alpha 3 0.070593
EXT1 exostosin glycosyltransferase 1 0.0677471
EPAS1 endothelial PAS domain protein 1 0.0564526
ZBTB38 zinc finger and BTB domain containing 38 0.0543748
INTS6 integrator complex subunit 6 0.0458464
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 0.0429156
RNF213 ring finger protein 213 0.0426666
VCL vinculin 0.0424658
SMAD3 SMAD family member 3 0.0410171
GPC6 glypican 6 0.040263
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0399811
SEPTIN9 septin 9 0.0399501
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0394926
AKAP12 A kinase (PRKA) anchor protein 12 0.0388177
ZMIZ1 zinc finger, MIZ-type containing 1 0.0380614
TRIO trio Rho guanine nucleotide exchange factor 0.0376362
HMGA2 high mobility group AT-hook 2 0.0371193
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.0356522
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0355206
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.0351266
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) 0.0350683
TGM2 transglutaminase 2 0.0347397
SMYD3 SET and MYND domain containing 3 0.0345039
VEGFA vascular endothelial growth factor A 0.0339084
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 0.0331982
ATXN1 ataxin 1 0.0318072
DUSP10 dual specificity phosphatase 10 0.031649
NHS Nance-Horan syndrome (congenital cataracts and dental anomalies) 0.0314454
TNS3 tensin 3 0.0301838
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.0297453
LAMC1 laminin, gamma 1 (formerly LAMB2) 0.0294351
RAD51B RAD51 paralog B 0.0292066
FNIP1 folliculin interacting protein 1 0.0289038
IGFN1 immunoglobulin-like and fibronectin type III domain containing 1 0.0288758
WWOX WW domain containing oxidoreductase 0.0287432
IL1RAPL1 interleukin 1 receptor accessory protein-like 1 0.0287305
JMJD1C jumonji domain containing 1C 0.0286497
FHIT fragile histidine triad 0.0282991
SHB Src homology 2 domain containing adaptor protein B 0.0275832
IRAK2 interleukin-1 receptor-associated kinase 2 0.0275185
IQCJ-SCHIP1 IQCJ-SCHIP1 readthrough 0.0272205
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 0.026381
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0263539
MYOF myoferlin 0.0259516
CPEB4 cytoplasmic polyadenylation element binding protein 4 0.0255992
TLE4 transducin-like enhancer of split 4 0.0255547
SOX9 SRY (sex determining region Y)-box 9 0.0251804
FMN1 formin 1 0.0251722
DUSP5 dual specificity phosphatase 5 0.0238852
FNDC3B fibronectin type III domain containing 3B 0.0237347
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0236913
PMEPA1 prostate transmembrane protein, androgen induced 1 0.0235506
EGFR epidermal growth factor receptor 0.0233218
VCAN versican 0.0228687
RUNX1 runt-related transcription factor 1 0.0227767
MBNL1 muscleblind-like splicing regulator 1 0.0225451
RAB7A RAB7A, member RAS oncogene family 0.0224673
PDE10A phosphodiesterase 10A 0.0224187
TIMP2 TIMP metallopeptidase inhibitor 2 0.021728
CORO1C coronin, actin binding protein, 1C 0.0216053
ZHX2 zinc fingers and homeoboxes 2 0.0214358
SIPA1L1 signal-induced proliferation-associated 1 like 1 0.0213636
SLC39A11 solute carrier family 39, member 11 0.0212822
RND3 Rho family GTPase 3 0.0212388
FBXL7 F-box and leucine-rich repeat protein 7 0.0211673
BCAR3 breast cancer anti-estrogen resistance 3 0.0211442
LOXL2 lysyl oxidase-like 2 0.021088
PDLIM5 PDZ and LIM domain 5 0.0210736
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.020323
MBD5 methyl-CpG binding domain protein 5 0.0202361
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.0200557
KSR1 kinase suppressor of ras 1 0.0198914
PCLO piccolo presynaptic cytomatrix protein 0.019808
EFNA5 ephrin-A5 0.0197989
TMEM132D transmembrane protein 132D 0.0196988
CCNL1 cyclin L1 0.0196082
FNIP2 folliculin interacting protein 2 0.0194983
RASAL2 RAS protein activator like 2 0.0192888
FBXO32 F-box protein 32 0.0192813
GLIS3 GLIS family zinc finger 3 0.0191478
EPC2 enhancer of polycomb homolog 2 (Drosophila) 0.0191143
PTPRK protein tyrosine phosphatase, receptor type, K 0.018997
SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 0.01879
UTRN utrophin 0.0187461
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0187064
TUT7 terminal uridylyl transferase 7 0.0186568
ZFYVE16 zinc finger, FYVE domain containing 16 0.018602
FER fer (fps/fes related) tyrosine kinase 0.0184335
TIAM2 T-cell lymphoma invasion and metastasis 2 0.0181939
UBASH3B ubiquitin associated and SH3 domain containing B 0.0181923
VTI1A vesicle transport through interaction with t-SNAREs 1A 0.0181392
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 0.0181039
SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 0.0181023
SMAD2 SMAD family member 2 0.017996
RALGAPA2 Ral GTPase activating protein, alpha subunit 2 (catalytic) 0.0178454

decreased expression

Symbol Name Standardized Value
VIM vimentin -0.308901
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.144272
HLA-B major histocompatibility complex, class I, B -0.131186
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.123326
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.109798
UBC ubiquitin C -0.0994792
PTMA prothymosin, alpha -0.0940344
IER3 immediate early response 3 -0.0908855
PGK1 phosphoglycerate kinase 1 -0.0875167
TPT1 tumor protein, translationally-controlled 1 -0.0850705
RPS27A ribosomal protein S27a -0.0811593
CANX calnexin -0.0797275
SPARC secreted protein, acidic, cysteine-rich (osteonectin) -0.0772426
ENO1 enolase 1, (alpha) -0.076344
AHNAK AHNAK nucleoprotein -0.0724876
ZNF292 zinc finger protein 292 -0.0712887
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0705296
TMSB10 thymosin beta 10 -0.0663404
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0653693
LDHA lactate dehydrogenase A -0.0623028
HLA-E major histocompatibility complex, class I, E -0.0594412
CALR calreticulin -0.0593534
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0581881
NAMPT nicotinamide phosphoribosyltransferase -0.0558435
EEF2 eukaryotic translation elongation factor 2 -0.0553066
ELL2 elongation factor, RNA polymerase II, 2 -0.0547928
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0547332
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0546222
ZMYND8 zinc finger, MYND-type containing 8 -0.054499
MXI1 MAX interactor 1, dimerization protein -0.054288
ADM adrenomedullin -0.0523471
ANXA2 annexin A2 -0.0521782
RPS3 ribosomal protein S3 -0.050522
RPS24 ribosomal protein S24 -0.049934
NAP1L1 nucleosome assembly protein 1-like 1 -0.0486383
RPL23 ribosomal protein L23 -0.0478719
KDM3A lysine (K)-specific demethylase 3A -0.0478039
COL1A1 collagen, type I, alpha 1 -0.0471323
CD44 CD44 molecule (Indian blood group) -0.046293
EIF1 eukaryotic translation initiation factor 1 -0.045134
KPNB1 karyopherin (importin) beta 1 -0.0443948
MT2A metallothionein 2A -0.0437321
TPM4 tropomyosin 4 -0.0434651
TOP2A topoisomerase (DNA) II alpha 170kDa -0.043274
SOD2 superoxide dismutase 2, mitochondrial -0.0430944
FN1 fibronectin 1 -0.0428621
MARCKS myristoylated alanine-rich protein kinase C substrate -0.0419869
IGFBP3 insulin-like growth factor binding protein 3 -0.0419226
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0419022
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0410588
B2M beta-2-microglobulin -0.0407397
RPS8 ribosomal protein S8 -0.0407371
FTL ferritin, light polypeptide -0.0402622
GOLGA4 golgin A4 -0.0394833
OGA O-GlcNAcase -0.0389188
PNRC1 proline-rich nuclear receptor coactivator 1 -0.0385291
WDFY1 WD repeat and FYVE domain containing 1 -0.0383478
WSB1 WD repeat and SOCS box containing 1 -0.0382581
JUN jun proto-oncogene -0.037319
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0363813
RTN4 reticulon 4 -0.0362894
ARRDC3 arrestin domain containing 3 -0.0360709
STC1 stanniocalcin 1 -0.0360667
RAI14 retinoic acid induced 14 -0.0357916
SLC38A1 solute carrier family 38, member 1 -0.0355034
P4HA2 prolyl 4-hydroxylase, alpha polypeptide II -0.0351088
BTG1 B-cell translocation gene 1, anti-proliferative -0.0348355
RAI1 retinoic acid induced 1 -0.0344288
SDC4 syndecan 4 -0.0340316
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 -0.033987
SEPTIN7 septin 7 -0.0334581
ANLN anillin, actin binding protein -0.0318181
RPS13 ribosomal protein S13 -0.0314854
GNAS GNAS complex locus -0.0312321
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0303556
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0300666
SRGN serglycin -0.0298971
RPL37A ribosomal protein L37a -0.0298875
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 -0.0298306
MATR3 matrin 3 -0.0296353
DDIT4 DNA-damage-inducible transcript 4 -0.0294454
UGCG UDP-glucose ceramide glucosyltransferase -0.0284987
RPLP2 ribosomal protein, large, P2 -0.0284649
NDRG1 N-myc downstream regulated 1 -0.0282352
CSDE1 cold shock domain containing E1, RNA-binding -0.0282282
NT5C2 5'-nucleotidase, cytosolic II -0.027276
RPL36A ribosomal protein L36a -0.0271955
CALU calumenin -0.0271189
COL1A2 collagen, type I, alpha 2 -0.0270642
THBS1 thrombospondin 1 -0.0268526
RACK1 receptor for activated C kinase 1 -0.0264181
KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 -0.026134
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0260977
FAM162A family with sequence similarity 162, member A -0.0254734
ARL4C ADP-ribosylation factor-like 4C -0.0252699
PCBP2 poly(rC) binding protein 2 -0.0251986
NPEPPS aminopeptidase puromycin sensitive -0.0251465
RPS12 ribosomal protein S12 -0.0250532
FUT11 fucosyltransferase 11 (alpha (1,3) fucosyltransferase) -0.0250455
PJA2 praja ring finger 2, E3 ubiquitin protein ligase -0.024978