Torkinib_SW 1088 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Torkinib perturbation in SW 1088 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Torkinib_SW 1088 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FTH1 ferritin, heavy polypeptide 1 0.136274
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.109088
VIM vimentin 0.108206
ERRFI1 ERBB receptor feedback inhibitor 1 0.0937418
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0751405
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.0730314
FNDC3B fibronectin type III domain containing 3B 0.0713284
SOD2 superoxide dismutase 2, mitochondrial 0.0696207
ZSWIM6 zinc finger, SWIM-type containing 6 0.0655719
PRELID2 PRELI domain containing 2 0.0648994
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0635019
FAM13A family with sequence similarity 13, member A 0.0623724
SND1 staphylococcal nuclease and tudor domain containing 1 0.0603703
MYH9 myosin, heavy chain 9, non-muscle 0.0599
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0594745
ENO1 enolase 1, (alpha) 0.057633
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0546528
SEC24A SEC24 family member A 0.0541921
TGFBI transforming growth factor, beta-induced, 68kDa 0.0530614
STC1 stanniocalcin 1 0.0522965
ADM adrenomedullin 0.0503776
SDC4 syndecan 4 0.0494788
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 0.0490566
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0489449
AKAP9 A kinase (PRKA) anchor protein 9 0.0484249
INTS6 integrator complex subunit 6 0.0473129
KYNU kynureninase 0.0448874
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.0444456
TNIP1 TNFAIP3 interacting protein 1 0.0421841
GLS2 glutaminase 2 (liver, mitochondrial) 0.0418189
FNIP1 folliculin interacting protein 1 0.0418017
PRKRIP1 PRKR interacting protein 1 (IL11 inducible) 0.0412402
NDRG1 N-myc downstream regulated 1 0.0405872
ZCCHC7 zinc finger, CCHC domain containing 7 0.0404636
RND3 Rho family GTPase 3 0.0393915
JARID2 jumonji, AT rich interactive domain 2 0.0388197
POTEF POTE ankyrin domain family, member F 0.038253
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0376603
YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma 0.0375707
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.037196
RPS12 ribosomal protein S12 0.0369035
INSIG2 insulin induced gene 2 0.0366673
B2M beta-2-microglobulin 0.0362108
GFPT1 glutamine--fructose-6-phosphate transaminase 1 0.0360748
LGALS3 lectin, galactoside-binding, soluble, 3 0.035981
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 0.0358621
SEPTIN2 septin 2 0.0358481
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.0354077
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 0.0346824
COPB1 coatomer protein complex, subunit beta 1 0.0346368
EIF1 eukaryotic translation initiation factor 1 0.0344689
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 0.0339547
HBP1 HMG-box transcription factor 1 0.0336798
LDHA lactate dehydrogenase A 0.0332131
DSCAM Down syndrome cell adhesion molecule 0.0331905
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0327831
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 0.0327504
NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 0.032671
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0323197
HIP1 huntingtin interacting protein 1 0.0319677
ZNF395 zinc finger protein 395 0.03142
SLC39A14 solute carrier family 39 (zinc transporter), member 14 0.031291
ALK anaplastic lymphoma receptor tyrosine kinase 0.0308689
UBA6 ubiquitin-like modifier activating enzyme 6 0.0308245
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.0307445
ANXA5 annexin A5 0.030597
SUCO SUN domain containing ossification factor 0.0304421
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0303437
MTPN myotrophin 0.0301454
SEC24D SEC24 family member D 0.0299869
IL6 interleukin 6 0.0297099
SHB Src homology 2 domain containing adaptor protein B 0.0295276
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.0293985
CYLD cylindromatosis (turban tumor syndrome) 0.0286473
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0283024
MCL1 myeloid cell leukemia 1 0.0281908
FAM107B family with sequence similarity 107, member B 0.0279648
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 0.0278417
PGM3 phosphoglucomutase 3 0.0277927
MYDGF myeloid-derived growth factor 0.0275397
MT2A metallothionein 2A 0.0273633
ARFIP1 ADP-ribosylation factor interacting protein 1 0.0272085
ARRDC3 arrestin domain containing 3 0.0269155
SEC31A SEC31 homolog A (S. cerevisiae) 0.0268961
PTGES2 prostaglandin E synthase 2 0.0268743
TRA2A transformer 2 alpha homolog (Drosophila) 0.0268349
PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 0.0266587
HELZ helicase with zinc finger 0.0265176
NFE2L1 nuclear factor, erythroid 2-like 1 0.0262111
BACE2 beta-site APP-cleaving enzyme 2 0.0259659
ANKHD1 ankyrin repeat and KH domain containing 1 0.0258775
ATP2C1 ATPase, Ca++ transporting, type 2C, member 1 0.0257987
WASHC4 WASH complex subunit 4 0.0257835
BHLHE40 basic helix-loop-helix family, member e40 0.025765
GNAI3 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 0.0257507
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.0257189
MICAL2 microtubule associated monooxygenase, calponin and LIM domain containing 2 0.0255833
RAB10 RAB10, member RAS oncogene family 0.0255462
TPM3 tropomyosin 3 0.0254281
C1D C1D nuclear receptor corepressor 0.0254279

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.234548
COL1A1 collagen, type I, alpha 1 -0.198456
FN1 fibronectin 1 -0.188157
SPARC secreted protein, acidic, cysteine-rich (osteonectin) -0.18132
COL6A3 collagen, type VI, alpha 3 -0.16192
COL1A2 collagen, type I, alpha 2 -0.159733
LOX lysyl oxidase -0.101187
IGFBP3 insulin-like growth factor binding protein 3 -0.0932734
PSD3 pleckstrin and Sec7 domain containing 3 -0.071246
HLA-B major histocompatibility complex, class I, B -0.0696303
COL6A1 collagen, type VI, alpha 1 -0.0655083
GLIS3 GLIS family zinc finger 3 -0.0645749
CDK6 cyclin-dependent kinase 6 -0.0616695
HLA-C major histocompatibility complex, class I, C -0.0592991
MT1X metallothionein 1X -0.0584233
EGR1 early growth response 1 -0.0536327
MAP1B microtubule-associated protein 1B -0.0520431
ACTG1 actin gamma 1 -0.0498458
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0484308
CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 -0.048142
RRBP1 ribosome binding protein 1 -0.0473129
COL3A1 collagen, type III, alpha 1 -0.0460616
NIPBL Nipped-B homolog (Drosophila) -0.0456049
AHNAK AHNAK nucleoprotein -0.0455138
COL5A2 collagen, type V, alpha 2 -0.0451291
DLG1 discs, large homolog 1 (Drosophila) -0.0449323
CCNI cyclin I -0.0440072
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0437516
H3-3B H3.3 histone B -0.043368
TNNC1 troponin C type 1 (slow) -0.0430775
CALU calumenin -0.042685
COL6A2 collagen, type VI, alpha 2 -0.0423332
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0401782
LOXL2 lysyl oxidase-like 2 -0.0385212
PLCB4 phospholipase C, beta 4 -0.0382124
PXDN peroxidasin -0.0382061
MMP14 matrix metallopeptidase 14 (membrane-inserted) -0.0369576
SMYD3 SET and MYND domain containing 3 -0.0367927
LAMA4 laminin, alpha 4 -0.0348939
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.0347673
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0338685
ZMYM2 zinc finger, MYM-type 2 -0.0337496
SLC38A2 solute carrier family 38, member 2 -0.0336673
RPS24 ribosomal protein S24 -0.0333543
DKK3 dickkopf WNT signaling pathway inhibitor 3 -0.0331638
PTPRG protein tyrosine phosphatase, receptor type, G -0.032787
TPM1 tropomyosin 1 (alpha) -0.0321348
TXNRD1 thioredoxin reductase 1 -0.0320258
TUBB tubulin, beta class I -0.0316847
S100A6 S100 calcium binding protein A6 -0.031241
BASP1 brain abundant, membrane attached signal protein 1 -0.0311632
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 -0.0311546
MAP3K2 mitogen-activated protein kinase kinase kinase 2 -0.030811
EFNA5 ephrin-A5 -0.0304769
SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A -0.030237
SPRED2 sprouty-related, EVH1 domain containing 2 -0.0301252
PTMA prothymosin, alpha -0.028619
PIAS1 protein inhibitor of activated STAT, 1 -0.0282452
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 -0.0282328
FBN1 fibrillin 1 -0.0281483
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 -0.0279786
PIK3R1 phosphoinositide-3-kinase, regulatory subunit 1 (alpha) -0.0277031
ANKIB1 ankyrin repeat and IBR domain containing 1 -0.0275449
ERCC6L2 excision repair cross-complementation group 6-like 2 -0.0271726
GRIK5 glutamate receptor, ionotropic, kainate 5 -0.0271324
PDE10A phosphodiesterase 10A -0.0270256
HIPK2 homeodomain interacting protein kinase 2 -0.0269984
ERGIC1 endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 -0.0268247
TNS3 tensin 3 -0.0261827
S100A9 S100 calcium binding protein A9 -0.0260783
TENT5A terminal nucleotidyltransferase 5A -0.0260447
CENPF centromere protein F, 350/400kDa -0.0260307
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0257522
KCNE4 potassium channel, voltage gated subfamily E regulatory beta subunit 4 -0.0254735
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 -0.0254709
RPS11 ribosomal protein S11 -0.0252849
ITFG1 integrin alpha FG-GAP repeat containing 1 -0.0252573
ERBIN erbb2 interacting protein -0.0251309
TRPS1 trichorhinophalangeal syndrome I -0.0250769
ZFAND3 zinc finger, AN1-type domain 3 -0.0249838
SEPTIN7 septin 7 -0.0249599
ZFHX3 zinc finger homeobox 3 -0.0245716
PFN1 profilin 1 -0.0245566
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) -0.0243497
NCOA7 nuclear receptor coactivator 7 -0.0242737
CALD1 caldesmon 1 -0.0242655
KLHL5 kelch-like family member 5 -0.0242328
GNAS GNAS complex locus -0.0240927
FKBP10 FK506 binding protein 10, 65 kDa -0.0240737
VCL vinculin -0.0240674
CD99 CD99 molecule -0.024048
ACTR2 ARP2 actin-related protein 2 homolog (yeast) -0.0240161
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0239224
PDIA3 protein disulfide isomerase family A, member 3 -0.0239177
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 -0.0237683
AK1 adenylate kinase 1 -0.02367
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0236397
NPEPPS aminopeptidase puromycin sensitive -0.0235406
PGK1 phosphoglycerate kinase 1 -0.023256
TMEM123 transmembrane protein 123 -0.0232046