Trametinib (DMSO_HCT15 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Trametinib (DMSO perturbation in HCT15 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Trametinib (DMSO_HCT15 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
CANX calnexin 0.10327
EEF2 eukaryotic translation elongation factor 2 0.0908173
GFPT1 glutamine--fructose-6-phosphate transaminase 1 0.0894892
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0773461
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa 0.075452
KMT2C lysine (K)-specific methyltransferase 2C 0.0718155
ZNF292 zinc finger protein 292 0.070572
PCBP2 poly(rC) binding protein 2 0.0680167
YEATS2 YEATS domain containing 2 0.0623078
PRELID2 PRELI domain containing 2 0.0589007
DSPP dentin sialophosphoprotein 0.058335
OGA O-GlcNAcase 0.0573142
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0571711
GOLGA4 golgin A4 0.0560447
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.05428
CSDE1 cold shock domain containing E1, RNA-binding 0.0540873
N4BP2L2 NEDD4 binding protein 2-like 2 0.0526029
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 0.050669
ASNS asparagine synthetase (glutamine-hydrolyzing) 0.0501619
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.0494632
TENM3 teneurin transmembrane protein 3 0.0494162
DSCAM Down syndrome cell adhesion molecule 0.0479975
AKAP9 A kinase (PRKA) anchor protein 9 0.047259
NEBL nebulette 0.0456497
MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 0.045194
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0450595
HELZ helicase with zinc finger 0.0450218
CDK19 cyclin-dependent kinase 19 0.0444766
PIK3C2A phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha 0.0442398
B2M beta-2-microglobulin 0.0434044
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0430046
FHIP1A FHF complex subunit HOOK interacting protein 1A 0.0427761
ANKRD11 ankyrin repeat domain 11 0.0421484
MYH9 myosin, heavy chain 9, non-muscle 0.0420531
ARHGEF12 Rho guanine nucleotide exchange factor (GEF) 12 0.041838
EPRS1 glutamyl-prolyl-tRNA synthetase 1 0.0416988
UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative) 0.0413107
RAD51B RAD51 paralog B 0.0399294
PTEN phosphatase and tensin homolog 0.0398285
GIGYF2 GRB10 interacting GYF protein 2 0.0396021
MBNL2 muscleblind-like splicing regulator 2 0.039397
HERC3 HECT and RLD domain containing E3 ubiquitin protein ligase 3 0.0389423
TNRC6A trinucleotide repeat containing 6A 0.0379591
SMG1 SMG1 phosphatidylinositol 3-kinase-related kinase 0.0379489
YME1L1 YME1-like 1 ATPase 0.0378732
CALR calreticulin 0.0377863
TMF1 TATA element modulatory factor 1 0.0376662
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.0371687
KMT2E lysine (K)-specific methyltransferase 2E 0.0370341
GANAB glucosidase, alpha; neutral AB 0.0367969
XPOT exportin, tRNA 0.0366492
CNN3 calponin 3, acidic 0.0365827
FTH1 ferritin, heavy polypeptide 1 0.0363319
TRA2A transformer 2 alpha homolog (Drosophila) 0.036062
EPB41 erythrocyte membrane protein band 4.1 0.0357407
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0350249
PHC3 polyhomeotic homolog 3 (Drosophila) 0.0346954
MAP4 microtubule-associated protein 4 0.0345694
MED13 mediator complex subunit 13 0.034431
SRP54 signal recognition particle 54kDa 0.0323522
OGT O-linked N-acetylglucosamine (GlcNAc) transferase 0.031768
AARS1 alanyl-tRNA synthetase 1 0.0316918
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0310713
SHROOM3 shroom family member 3 0.030888
GYS1 glycogen synthase 1 (muscle) 0.0308706
PHF21A PHD finger protein 21A 0.0307999
HOOK2 hook microtubule-tethering protein 2 0.0307424
YTHDC1 YTH domain containing 1 0.0307133
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 0.0306571
WAC WW domain containing adaptor with coiled-coil 0.030564
CNOT1 CCR4-NOT transcription complex, subunit 1 0.0304659
APLP2 amyloid beta (A4) precursor-like protein 2 0.0304279
SCARB2 scavenger receptor class B, member 2 0.0302792
ZNF148 zinc finger protein 148 0.0301873
WDFY3 WD repeat and FYVE domain containing 3 0.0299832
MAP3K2 mitogen-activated protein kinase kinase kinase 2 0.0299237
MON2 MON2 homolog (S. cerevisiae) 0.0297386
TTC3 tetratricopeptide repeat domain 3 0.029541
KDM6A lysine (K)-specific demethylase 6A 0.0295208
PCCA propionyl CoA carboxylase, alpha polypeptide 0.0295004
ZNF451 zinc finger protein 451 0.0292293
PGM3 phosphoglucomutase 3 0.0290848
RAB1A RAB1A, member RAS oncogene family 0.0290687
MLLT3 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 0.028954
ZZZ3 zinc finger, ZZ-type containing 3 0.028875
TMTC2 transmembrane and tetratricopeptide repeat containing 2 0.0288217
SREK1 splicing regulatory glutamine/lysine-rich protein 1 0.0286557
TBC1D4 TBC1 domain family, member 4 0.0284364
INSIG2 insulin induced gene 2 0.0283675
APOL2 apolipoprotein L, 2 0.0283156
RBM39 RNA binding motif protein 39 0.0282044
CTNND1 catenin (cadherin-associated protein), delta 1 0.0280846
FNDC3A fibronectin type III domain containing 3A 0.0280715
YARS1 tyrosyl-tRNA synthetase 1 0.0280508
REV3L REV3-like, polymerase (DNA directed), zeta, catalytic subunit 0.0279287
UTRN utrophin 0.0275665
ANKRD12 ankyrin repeat domain 12 0.0275645
LUC7L2 LUC7-like 2 (S. cerevisiae) 0.0273374
ADAR adenosine deaminase, RNA-specific 0.0269754
PNISR PNN-interacting serine/arginine-rich protein 0.0269724

decreased expression

Symbol Name Standardized Value
FAT1 FAT atypical cadherin 1 -0.249025
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.15631
PTMA prothymosin, alpha -0.153535
TMSB10 thymosin beta 10 -0.137425
ERRFI1 ERBB receptor feedback inhibitor 1 -0.133069
NDRG1 N-myc downstream regulated 1 -0.131663
AHNAK AHNAK nucleoprotein -0.0997793
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0925104
TPM4 tropomyosin 4 -0.0838472
PKM pyruvate kinase, muscle -0.0828724
EGR1 early growth response 1 -0.0774947
MT2A metallothionein 2A -0.0766196
MKI67 marker of proliferation Ki-67 -0.0707095
KRT18 keratin 18, type I -0.069556
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0672484
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.064848
PRAG1 PEAK1 related, kinase-activating pseudokinase 1 -0.0609709
EGFR epidermal growth factor receptor -0.0608427
EZR ezrin -0.0608244
MCL1 myeloid cell leukemia 1 -0.0605595
LOC112694756 uncharaterized LOC112694756 -0.0564711
CENPF centromere protein F, 350/400kDa -0.0555667
INTS6 integrator complex subunit 6 -0.0537762
ACTG1 actin gamma 1 -0.0528183
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.0525804
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.051643
TPT1 tumor protein, translationally-controlled 1 -0.0506772
RRM2 ribonucleotide reductase M2 -0.0491477
KRT8 keratin 8, type II -0.0484419
HMGA1 high mobility group AT-hook 1 -0.0479353
TUBB4B tubulin, beta 4B class IVb -0.0462064
POTEF POTE ankyrin domain family, member F -0.0455762
SPRED2 sprouty-related, EVH1 domain containing 2 -0.0429548
RAB7A RAB7A, member RAS oncogene family -0.0424226
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase -0.0422795
S100A10 S100 calcium binding protein A10 -0.0418213
TUBA1B tubulin, alpha 1b -0.0401991
DIAPH3 diaphanous-related formin 3 -0.038762
CCND1 cyclin D1 -0.0380107
ANXA2 annexin A2 -0.0377659
FAF1 Fas (TNFRSF6) associated factor 1 -0.0377526
ARF4 ADP-ribosylation factor 4 -0.0377335
CDCP1 CUB domain containing protein 1 -0.0377046
PLAUR plasminogen activator, urokinase receptor -0.0371392
SDC4 syndecan 4 -0.0369146
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 -0.0357796
UBE2E2 ubiquitin-conjugating enzyme E2E 2 -0.0355945
SLC38A1 solute carrier family 38, member 1 -0.0351606
FRMD5 FERM domain containing 5 -0.0351289
FLNB filamin B, beta -0.035085
ASPH aspartate beta-hydroxylase -0.0346177
KIAA1217 KIAA1217 -0.0342162
ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) -0.0336718
SHB Src homology 2 domain containing adaptor protein B -0.0331486
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0330478
AGO2 argonaute RISC catalytic component 2 -0.0329716
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) -0.0328605
CADPS Ca++-dependent secretion activator -0.0327096
BZW1 basic leucine zipper and W2 domains 1 -0.0322642
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.031664
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.0315103
RPS24 ribosomal protein S24 -0.0312357
SMC4 structural maintenance of chromosomes 4 -0.0309086
EHBP1 EH domain binding protein 1 -0.0305508
ASAP2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 -0.0304447
CACNB4 calcium channel, voltage-dependent, beta 4 subunit -0.0304057
BACE2 beta-site APP-cleaving enzyme 2 -0.0300505
TUBB tubulin, beta class I -0.0296407
MACF1 microtubule-actin crosslinking factor 1 -0.0296161
HMGA2 high mobility group AT-hook 2 -0.0294431
ADGRG6 adhesion G protein-coupled receptor G6 -0.029099
PKP4 plakophilin 4 -0.0282062
SEPTIN10 septin 10 -0.0281351
CEP128 centrosomal protein 128kDa -0.0280282
ABCC3 ATP-binding cassette, sub-family C (CFTR/MRP), member 3 -0.0279015
ITGB4 integrin, beta 4 -0.027646
TNFAIP8 tumor necrosis factor, alpha-induced protein 8 -0.027606
TGFB1 transforming growth factor, beta 1 -0.0272056
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0270501
SLC38A2 solute carrier family 38, member 2 -0.0262229
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.0258893
FHIT fragile histidine triad -0.025867
SERPINB1 serpin peptidase inhibitor, clade B (ovalbumin), member 1 -0.0257983
KLHL29 kelch-like family member 29 -0.0256505
UGDH UDP-glucose 6-dehydrogenase -0.0253979
CALM1 calmodulin 1 (phosphorylase kinase, delta) -0.0253584
FUS FUS RNA binding protein -0.0253462
LRRC23 leucine rich repeat containing 23 -0.025332
RPS27A ribosomal protein S27a -0.024999
DLC1 DLC1 Rho GTPase activating protein -0.024831
KLF12 Kruppel-like factor 12 -0.0245955
NT5DC3 5'-nucleotidase domain containing 3 -0.024505
HELLS helicase, lymphoid-specific -0.0244345
ANLN anillin, actin binding protein -0.0244143
PALD1 phosphatase domain containing, paladin 1 -0.0242121
HMGB1 high mobility group box 1 -0.0241631
FOSL1 FOS-like antigen 1 -0.0240402
PSMD14 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 -0.0240052
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0238869
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) -0.0236103