Trametinib (DMSO_J82 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Trametinib (DMSO perturbation in J82 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Trametinib (DMSO_J82 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.129861
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0731999
KLF7 Kruppel-like factor 7 (ubiquitous) 0.0719836
ENO1 enolase 1, (alpha) 0.068427
ZNF841 zinc finger protein 841 0.0678318
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0664475
FTH1 ferritin, heavy polypeptide 1 0.059082
ATP13A3 ATPase type 13A3 0.0543706
ADM adrenomedullin 0.0502957
CALR calreticulin 0.0489927
POSTN periostin, osteoblast specific factor 0.0487515
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0478504
CANX calnexin 0.0476
FAM120A family with sequence similarity 120A 0.0472038
MYH9 myosin, heavy chain 9, non-muscle 0.046512
STC2 stanniocalcin 2 0.0441327
SLC12A8 solute carrier family 12, member 8 0.0425403
COL5A1 collagen, type V, alpha 1 0.042501
CCBE1 collagen and calcium binding EGF domains 1 0.0415622
GRAMD2B GRAM domain containing 2B 0.0412721
GANAB glucosidase, alpha; neutral AB 0.0405742
FNDC3B fibronectin type III domain containing 3B 0.0396725
UGCG UDP-glucose ceramide glucosyltransferase 0.0385522
KRT18 keratin 18, type I 0.038429
TGFB2 transforming growth factor, beta 2 0.0377808
UBA6 ubiquitin-like modifier activating enzyme 6 0.0368812
ZNF148 zinc finger protein 148 0.035532
RAB8B RAB8B, member RAS oncogene family 0.0350048
AHNAK AHNAK nucleoprotein 0.0343249
PDIA3 protein disulfide isomerase family A, member 3 0.033759
MYLK myosin light chain kinase 0.0332385
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0309441
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0308731
ATP5F1B ATP synthase F1 subunit beta 0.0303627
TPM3 tropomyosin 3 0.0303397
NAMPT nicotinamide phosphoribosyltransferase 0.0296551
PLCB4 phospholipase C, beta 4 0.0295129
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0293652
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0289648
CNBP CCHC-type zinc finger, nucleic acid binding protein 0.0284273
CAPRIN1 cell cycle associated protein 1 0.028251
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0280482
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.0279676
DRAM1 DNA-damage regulated autophagy modulator 1 0.0278759
APLP2 amyloid beta (A4) precursor-like protein 2 0.0278753
ARRDC3 arrestin domain containing 3 0.0278103
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 0.0277094
TMEM178B transmembrane protein 178B 0.0274957
TRAM1 translocation associated membrane protein 1 0.0273042
PGK1 phosphoglycerate kinase 1 0.0272644
FAR1 fatty acyl CoA reductase 1 0.0269914
PPME1 protein phosphatase methylesterase 1 0.0269428
CUL4B cullin 4B 0.0268373
BCL2L1 BCL2-like 1 0.0263724
SNX4 sorting nexin 4 0.0261619
STK4 serine/threonine kinase 4 0.0259664
VEGFC vascular endothelial growth factor C 0.0256436
PLK2 polo-like kinase 2 0.0250705
STARD13 StAR-related lipid transfer (START) domain containing 13 0.0250428
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats 0.0246075
PKP4 plakophilin 4 0.0244354
SFPQ splicing factor proline/glutamine-rich 0.0243161
ANKRD36 ankyrin repeat domain 36 0.0240554
BAZ2A bromodomain adjacent to zinc finger domain, 2A 0.0240404
PALM2AKAP2 PALM2 and AKAP2 fusion 0.023806
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0236169
ADAM12 ADAM metallopeptidase domain 12 0.0233921
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0231144
TPR translocated promoter region, nuclear basket protein 0.0229013
ARF4 ADP-ribosylation factor 4 0.022873
GOLGA2 golgin A2 0.0227055
IFI6 interferon, alpha-inducible protein 6 0.0226844
HEG1 heart development protein with EGF-like domains 1 0.0226559
GLIS3 GLIS family zinc finger 3 0.0225607
PTPRM protein tyrosine phosphatase, receptor type, M 0.0224691
SBF2 SET binding factor 2 0.0222111
PSIP1 PC4 and SFRS1 interacting protein 1 0.0222003
KRIT1 KRIT1, ankyrin repeat containing 0.0221752
SWAP70 SWAP switching B-cell complex 70kDa subunit 0.0221475
CKAP5 cytoskeleton associated protein 5 0.0221283
MED13L mediator complex subunit 13-like 0.0216924
RARS1 arginyl-tRNA synthetase 1 0.0216207
SULF1 sulfatase 1 0.0213761
CTTN cortactin 0.0212851
TPM1 tropomyosin 1 (alpha) 0.0211993
CD47 CD47 molecule 0.0211735
AGFG1 ArfGAP with FG repeats 1 0.0211716
SET SET nuclear proto-oncogene 0.0210311
DPM1 dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit 0.0209336
AKR1B1 aldo-keto reductase family 1, member B1 (aldose reductase) 0.0207864
NCKAP1 NCK-associated protein 1 0.0207373
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0207148
PGM3 phosphoglucomutase 3 0.0207091
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0204736
CD99 CD99 molecule 0.0204047
DDB1 damage-specific DNA binding protein 1, 127kDa 0.0203606
TAC4 tachykinin 4 (hemokinin) 0.0202148
SMAD3 SMAD family member 3 0.0199676
CCDC14 coiled-coil domain containing 14 0.0197696
FBXL5 F-box and leucine-rich repeat protein 5 0.0196354

decreased expression

Symbol Name Standardized Value
FN1 fibronectin 1 -0.218366
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.192808
IGFBP3 insulin-like growth factor binding protein 3 -0.116759
NDRG1 N-myc downstream regulated 1 -0.111335
NALF1 NALCN channel auxiliary factor 1 -0.103021
HLA-B major histocompatibility complex, class I, B -0.101005
ABI3BP ABI family, member 3 (NESH) binding protein -0.093913
TMSB10 thymosin beta 10 -0.0879168
DLG1 discs, large homolog 1 (Drosophila) -0.085524
MT2A metallothionein 2A -0.0837701
PHLDB2 pleckstrin homology-like domain, family B, member 2 -0.0687101
DTNA dystrobrevin, alpha -0.0640324
POTEF POTE ankyrin domain family, member F -0.0622757
CCND1 cyclin D1 -0.0608129
RPS6 ribosomal protein S6 -0.0594949
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0513239
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase -0.0509436
ACTG1 actin gamma 1 -0.048804
RPLP1 ribosomal protein, large, P1 -0.0479215
RPL35A ribosomal protein L35a -0.0463451
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0447776
ASPH aspartate beta-hydroxylase -0.0427516
PHACTR1 phosphatase and actin regulator 1 -0.0421273
TNFAIP3 tumor necrosis factor, alpha-induced protein 3 -0.0413407
RAB7A RAB7A, member RAS oncogene family -0.0413024
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 -0.0409374
MORF4L2 mortality factor 4 like 2 -0.040256
TRIO trio Rho guanine nucleotide exchange factor -0.0386075
HMGA1 high mobility group AT-hook 1 -0.0384637
PKM pyruvate kinase, muscle -0.0384222
VIM vimentin -0.03756
IGFBP5 insulin-like growth factor binding protein 5 -0.0362352
PTK2 protein tyrosine kinase 2 -0.0355991
EGR1 early growth response 1 -0.0349404
FTL ferritin, light polypeptide -0.0342153
RPL31 ribosomal protein L31 -0.034184
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase -0.0340487
RBM39 RNA binding motif protein 39 -0.0340412
PNRC1 proline-rich nuclear receptor coactivator 1 -0.0334231
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta -0.0324027
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0322201
NAV2 neuron navigator 2 -0.032185
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0316388
UBE2E2 ubiquitin-conjugating enzyme E2E 2 -0.0313737
ERBIN erbb2 interacting protein -0.0313205
TOP1 topoisomerase (DNA) I -0.0310788
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 -0.0310194
SRRM2 serine/arginine repetitive matrix 2 -0.0310016
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.030756
ANXA1 annexin A1 -0.030456
VPS13A vacuolar protein sorting 13 homolog A (S. cerevisiae) -0.0304067
CTSD cathepsin D -0.0304042
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.0287167
TLE4 transducin-like enhancer of split 4 -0.0284363
SF3B2 splicing factor 3b, subunit 2, 145kDa -0.0281393
RPS24 ribosomal protein S24 -0.0278237
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0274278
RPS20 ribosomal protein S20 -0.0271384
ANKRD11 ankyrin repeat domain 11 -0.0270914
PDE8A phosphodiesterase 8A -0.027043
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0269625
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.0266319
PDE4D phosphodiesterase 4D, cAMP-specific -0.0265062
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) -0.026217
BTG1 B-cell translocation gene 1, anti-proliferative -0.0260241
MAP4 microtubule-associated protein 4 -0.0259129
RPL32 ribosomal protein L32 -0.0255677
JARID2 jumonji, AT rich interactive domain 2 -0.0251526
ANKHD1 ankyrin repeat and KH domain containing 1 -0.0249492
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 -0.0248704
SQSTM1 sequestosome 1 -0.0245106
S100A10 S100 calcium binding protein A10 -0.0241872
EXT1 exostosin glycosyltransferase 1 -0.0240983
SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 -0.0237997
WSB1 WD repeat and SOCS box containing 1 -0.0236641
HMGB1 high mobility group box 1 -0.0236323
RPS21 ribosomal protein S21 -0.0236147
IGF1R insulin-like growth factor 1 receptor -0.023046
STAU1 staufen double-stranded RNA binding protein 1 -0.0230134
PDLIM5 PDZ and LIM domain 5 -0.0228868
PEA15 phosphoprotein enriched in astrocytes 15 -0.0228773
KRT17 keratin 17, type I -0.0226721
USP34 ubiquitin specific peptidase 34 -0.0226631
HSPH1 heat shock 105kDa/110kDa protein 1 -0.0224672
SIPA1L1 signal-induced proliferation-associated 1 like 1 -0.0224016
IPO7 importin 7 -0.0222285
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0221757
EIF5B eukaryotic translation initiation factor 5B -0.0221034
SLC38A1 solute carrier family 38, member 1 -0.0220751
EIF1 eukaryotic translation initiation factor 1 -0.0220317
JMJD1C jumonji domain containing 1C -0.0219933
RND3 Rho family GTPase 3 -0.0219114
NCOA7 nuclear receptor coactivator 7 -0.0218065
CAP1 CAP, adenylate cyclase-associated protein 1 (yeast) -0.0216478
SP100 SP100 nuclear antigen -0.0216336
RPLP2 ribosomal protein, large, P2 -0.0211408
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0210184
DENND1A DENN/MADD domain containing 1A -0.0210017
VDAC1 voltage-dependent anion channel 1 -0.020958
LMNA lamin A/C -0.02091