Trametinib_CHP-212 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Trametinib perturbation in CHP-212 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Trametinib_CHP-212 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
SYT1 synaptotagmin I 0.0922385
LPIN1 lipin 1 0.083366
DDX1 DEAD (Asp-Glu-Ala-Asp) box helicase 1 0.0734888
DST dystonin 0.0709502
AHNAK AHNAK nucleoprotein 0.0631271
RALYL RALY RNA binding protein-like 0.0623768
MAP1B microtubule-associated protein 1B 0.0518055
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0516413
ACTG1 actin gamma 1 0.050033
RNF213 ring finger protein 213 0.047516
RUNX1T1 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) 0.0421888
ZMIZ1 zinc finger, MIZ-type containing 1 0.0420091
DISP1 dispatched homolog 1 (Drosophila) 0.040764
PALLD palladin, cytoskeletal associated protein 0.0379945
RPL3 ribosomal protein L3 0.03799
EEF2 eukaryotic translation elongation factor 2 0.0376818
SSBP2 single-stranded DNA binding protein 2 0.0376389
KMT2C lysine (K)-specific methyltransferase 2C 0.0367434
TRIM37 tripartite motif containing 37 0.0359934
PLPP1 phospholipid phosphatase 1 0.0354783
AUTS2 autism susceptibility candidate 2 0.0348788
ANKS1B ankyrin repeat and sterile alpha motif domain containing 1B 0.0345588
HMBOX1 homeobox containing 1 0.0344417
MAN1A1 mannosidase, alpha, class 1A, member 1 0.0343204
ANK3 ankyrin 3, node of Ranvier (ankyrin G) 0.0341708
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0338735
NPEPPS aminopeptidase puromycin sensitive 0.0337631
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.0324159
ARID5B AT rich interactive domain 5B (MRF1-like) 0.0322727
AOPEP aminopeptidase O (putative) 0.0320746
ATP2B4 ATPase, Ca++ transporting, plasma membrane 4 0.0316936
ANXA2 annexin A2 0.0307058
COL1A1 collagen, type I, alpha 1 0.0306027
RPL4 ribosomal protein L4 0.0295926
CACNA2D1 calcium channel, voltage-dependent, alpha 2/delta subunit 1 0.0295457
CAMSAP2 calmodulin regulated spectrin-associated protein family, member 2 0.0292416
FMN1 formin 1 0.0291704
PCM1 pericentriolar material 1 0.0282359
FOXO3 forkhead box O3 0.028002
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) 0.0272699
TNRC6A trinucleotide repeat containing 6A 0.0268205
KDM6A lysine (K)-specific demethylase 6A 0.0263901
ZNF804A zinc finger protein 804A 0.026379
WAC WW domain containing adaptor with coiled-coil 0.0262551
MRTFA myocardin related transcription factor A 0.0261862
EPHA3 EPH receptor A3 0.0261625
ZSWIM6 zinc finger, SWIM-type containing 6 0.0261378
SCN9A sodium channel, voltage gated, type IX alpha subunit 0.0260922
ACSL3 acyl-CoA synthetase long-chain family member 3 0.025915
NCAM2 neural cell adhesion molecule 2 0.0258168
CNOT1 CCR4-NOT transcription complex, subunit 1 0.0257045
ELF2 E74-like factor 2 (ets domain transcription factor) 0.0254346
DLC1 DLC1 Rho GTPase activating protein 0.0251509
MEMO1 mediator of cell motility 1 0.0251004
SETD2 SET domain containing 2 0.0249344
GNA13 guanine nucleotide binding protein (G protein), alpha 13 0.0248953
PTPN13 protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) 0.0248099
MLLT10 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 0.0247129
LINGO2 leucine rich repeat and Ig domain containing 2 0.0244819
TNS3 tensin 3 0.0243089
PSD3 pleckstrin and Sec7 domain containing 3 0.0240242
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.0239337
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 0.0239271
DGKH diacylglycerol kinase, eta 0.0238501
ANKRD28 ankyrin repeat domain 28 0.0234297
HSPA8 heat shock 70kDa protein 8 0.0233448
GRIK5 glutamate receptor, ionotropic, kainate 5 0.023012
LRRFIP2 leucine rich repeat (in FLII) interacting protein 2 0.02269
DDX17 DEAD (Asp-Glu-Ala-Asp) box helicase 17 0.0226889
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.0225922
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0223785
ZMYM2 zinc finger, MYM-type 2 0.022199
FAM219A family with sequence similarity 219, member A 0.0220985
LCOR ligand dependent nuclear receptor corepressor 0.0219621
STRN3 striatin, calmodulin binding protein 3 0.0219501
TNPO1 transportin 1 0.0219245
PANK3 pantothenate kinase 3 0.0218999
PRRC2C proline-rich coiled-coil 2C 0.0217679
PICALM phosphatidylinositol binding clathrin assembly protein 0.0216207
PCDH9 protocadherin 9 0.0215246
NCKAP1 NCK-associated protein 1 0.0213543
MNAT1 MNAT CDK-activating kinase assembly factor 1 0.0211676
FXR1 fragile X mental retardation, autosomal homolog 1 0.021112
LMNA lamin A/C 0.0209776
ADGRL2 adhesion G protein-coupled receptor L2 0.0206134
KAT6A K(lysine) acetyltransferase 6A 0.0205546
VWA8 von Willebrand factor A domain containing 8 0.0204555
PTBP2 polypyrimidine tract binding protein 2 0.0203581
FRS2 fibroblast growth factor receptor substrate 2 0.0202389
FBXO32 F-box protein 32 0.0199571
SLMAP sarcolemma associated protein 0.0197729
TPST1 tyrosylprotein sulfotransferase 1 0.0197416
TANC1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 0.0196643
ADAM9 ADAM metallopeptidase domain 9 0.019454
PPP3R1 protein phosphatase 3, regulatory subunit B, alpha 0.0192766
KCTD3 potassium channel tetramerization domain containing 3 0.0192367
ARL15 ADP-ribosylation factor-like 15 0.0189346
ARHGAP24 Rho GTPase activating protein 24 0.0186031
ZNF148 zinc finger protein 148 0.0185974
KDM5A lysine (K)-specific demethylase 5A 0.018497

decreased expression

Symbol Name Standardized Value
NRG1 neuregulin 1 -0.208551
AKAP12 A kinase (PRKA) anchor protein 12 -0.173775
EXT1 exostosin glycosyltransferase 1 -0.149667
LSAMP limbic system-associated membrane protein -0.122636
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.108605
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0991698
LIMCH1 LIM and calponin homology domains 1 -0.096156
PLAT plasminogen activator, tissue -0.094415
FNDC3B fibronectin type III domain containing 3B -0.0748576
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0741063
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0700518
NPAS2 neuronal PAS domain protein 2 -0.0688898
STC1 stanniocalcin 1 -0.0686023
VCL vinculin -0.0684842
THSD4 thrombospondin, type I, domain containing 4 -0.0672791
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.0630211
CEMIP cell migration inducing protein, hyaluronan binding -0.0626426
FRMD4A FERM domain containing 4A -0.0620559
DPH6 diphthamine biosynthesis 6 -0.0620361
ANTXR1 anthrax toxin receptor 1 -0.0612625
EPAS1 endothelial PAS domain protein 1 -0.0605799
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0586825
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0556864
RPTOR regulatory associated protein of MTOR, complex 1 -0.0544708
LRFN5 leucine rich repeat and fibronectin type III domain containing 5 -0.0539475
MCL1 myeloid cell leukemia 1 -0.053644
CENPF centromere protein F, 350/400kDa -0.053036
CPED1 cadherin-like and PC-esterase domain containing 1 -0.0527116
GOLGA4 golgin A4 -0.0521604
COL4A5 collagen, type IV, alpha 5 -0.0518743
PDE4D phosphodiesterase 4D, cAMP-specific -0.0504774
GPC5 glypican 5 -0.0502972
NALF1 NALCN channel auxiliary factor 1 -0.0496197
ZBTB20 zinc finger and BTB domain containing 20 -0.0476074
TRIO trio Rho guanine nucleotide exchange factor -0.0464442
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0462856
MAML2 mastermind-like 2 (Drosophila) -0.0451622
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0445374
VIM vimentin -0.0444215
MAPK10 mitogen-activated protein kinase 10 -0.0440331
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0439961
CDH10 cadherin 10, type 2 (T2-cadherin) -0.0432155
ERRFI1 ERBB receptor feedback inhibitor 1 -0.0430829
NDRG1 N-myc downstream regulated 1 -0.0422553
FAM13A family with sequence similarity 13, member A -0.0410286
AFF3 AF4/FMR2 family, member 3 -0.0401904
PDIA3 protein disulfide isomerase family A, member 3 -0.0398258
PDE3A phosphodiesterase 3A, cGMP-inhibited -0.0393547
TOP1 topoisomerase (DNA) I -0.0384628
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0384281
NREP neuronal regeneration related protein -0.0383746
FN1 fibronectin 1 -0.0379723
EGR1 early growth response 1 -0.0378736
ST6GALNAC3 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 -0.0378364
NAMPT nicotinamide phosphoribosyltransferase -0.0371977
MORF4L2 mortality factor 4 like 2 -0.0367058
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa -0.0365358
BCAT1 branched chain amino-acid transaminase 1, cytosolic -0.0363153
TAS2R14 taste receptor, type 2, member 14 -0.035668
PRKCA protein kinase C, alpha -0.0354973
COL4A6 collagen, type IV, alpha 6 -0.0350849
HMGA2 high mobility group AT-hook 2 -0.0349661
BPTF bromodomain PHD finger transcription factor -0.0346013
GDF15 growth differentiation factor 15 -0.0344681
IER3 immediate early response 3 -0.0342102
MEF2A myocyte enhancer factor 2A -0.0341415
LMAN1 lectin, mannose-binding, 1 -0.034095
ASPH aspartate beta-hydroxylase -0.0334134
IGFBP3 insulin-like growth factor binding protein 3 -0.0331083
ESYT2 extended synaptotagmin-like protein 2 -0.0329955
PTPRM protein tyrosine phosphatase, receptor type, M -0.0326509
CANX calnexin -0.0326344
KLHL13 kelch-like family member 13 -0.0325774
REV3L REV3-like, polymerase (DNA directed), zeta, catalytic subunit -0.0323597
NCOA7 nuclear receptor coactivator 7 -0.0320245
MSI2 musashi RNA-binding protein 2 -0.0316947
CHD9 chromodomain helicase DNA binding protein 9 -0.0315455
EIF1 eukaryotic translation initiation factor 1 -0.0314498
FLT1 fms-related tyrosine kinase 1 -0.0312929
PCBP3 poly(rC) binding protein 3 -0.0308053
ZCCHC7 zinc finger, CCHC domain containing 7 -0.0305819
HM13 histocompatibility (minor) 13 -0.0304028
IARS1 isoleucyl-tRNA synthetase 1 -0.0303852
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0300507
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 -0.0299154
PTPRE protein tyrosine phosphatase, receptor type, E -0.0298974
KIAA1217 KIAA1217 -0.0296128
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0294682
TENT5A terminal nucleotidyltransferase 5A -0.0292985
SLC25A37 solute carrier family 25 (mitochondrial iron transporter), member 37 -0.0291498
B3GALT1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 -0.0291436
TPM1 tropomyosin 1 (alpha) -0.0289574
CDH13 cadherin 13 -0.0289063
UBE2D3 ubiquitin-conjugating enzyme E2D 3 -0.0287823
MACF1 microtubule-actin crosslinking factor 1 -0.0283644
IRF2BP2 interferon regulatory factor 2 binding protein 2 -0.0281137
ASCC3 activating signal cointegrator 1 complex subunit 3 -0.0280582
PHF3 PHD finger protein 3 -0.0274824
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) -0.0274476
ATRX alpha thalassemia/mental retardation syndrome X-linked -0.0274427