Trametinib_MIA PaCa-2 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Trametinib perturbation in MIA PaCa-2 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Trametinib_MIA PaCa-2 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.147504
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.145508
COL5A2 collagen, type V, alpha 2 0.143675
SOD2 superoxide dismutase 2, mitochondrial 0.125508
WARS1 tryptophanyl-tRNA synthetase 1 0.0976712
DST dystonin 0.0974053
TP63 tumor protein p63 0.0968549
EEF2 eukaryotic translation elongation factor 2 0.0952247
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.0762456
EGFR epidermal growth factor receptor 0.0755933
LDHA lactate dehydrogenase A 0.0725606
CFB complement factor B 0.0710692
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.066655
APOLD1 apolipoprotein L domain containing 1 0.0634804
DPYD dihydropyrimidine dehydrogenase 0.061759
RNF213 ring finger protein 213 0.0611695
EPHA4 EPH receptor A4 0.057259
AHNAK AHNAK nucleoprotein 0.057208
ANXA1 annexin A1 0.0569188
PGK1 phosphoglycerate kinase 1 0.0541038
PARP14 poly (ADP-ribose) polymerase family, member 14 0.053041
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0525641
MYOF myoferlin 0.05246
BABAM2 BRISC and BRCA1 A complex member 2 0.0494382
STXBP5 syntaxin binding protein 5 (tomosyn) 0.0488685
ADAR adenosine deaminase, RNA-specific 0.0485616
GNPDA1 glucosamine-6-phosphate deaminase 1 0.047854
GNGT1 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 0.0443452
PLK2 polo-like kinase 2 0.0437788
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 0.043772
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0435079
TMEM123 transmembrane protein 123 0.043136
TNFAIP2 tumor necrosis factor, alpha-induced protein 2 0.0427788
ENO1 enolase 1, (alpha) 0.0426607
TNS3 tensin 3 0.0415197
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0410259
KMT2C lysine (K)-specific methyltransferase 2C 0.0407135
IFIT1 interferon-induced protein with tetratricopeptide repeats 1 0.040687
MBNL2 muscleblind-like splicing regulator 2 0.0402918
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 0.0402235
VIM vimentin 0.0392607
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 0.0390158
PHF21A PHD finger protein 21A 0.0387156
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0383958
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 0.0382809
BIRC3 baculoviral IAP repeat containing 3 0.0375674
SFTPA2 surfactant protein A2 0.0364543
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0350662
CD109 CD109 molecule 0.0349979
SMG1 SMG1 phosphatidylinositol 3-kinase-related kinase 0.0346399
KTN1 kinectin 1 (kinesin receptor) 0.0345928
YEATS2 YEATS domain containing 2 0.0345917
BCAS3 breast carcinoma amplified sequence 3 0.0341277
SQSTM1 sequestosome 1 0.034126
HDLBP high density lipoprotein binding protein 0.034109
CANX calnexin 0.0339965
PTTG1IP pituitary tumor-transforming 1 interacting protein 0.0335034
CUL4B cullin 4B 0.0333045
MB21D2 Mab-21 domain containing 2 0.0328542
CSNK1A1 casein kinase 1, alpha 1 0.0328368
AHNAK2 AHNAK nucleoprotein 2 0.0308597
CALR calreticulin 0.0302638
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0301796
NPEPPS aminopeptidase puromycin sensitive 0.0300304
RUNX1 runt-related transcription factor 1 0.0298596
CLIC4 chloride intracellular channel 4 0.0297309
ALDH1A1 aldehyde dehydrogenase 1 family, member A1 0.0296717
ARRDC3 arrestin domain containing 3 0.0294303
RIGI RNA sensor RIG-I 0.0293818
BPTF bromodomain PHD finger transcription factor 0.0291654
ANKRD50 ankyrin repeat domain 50 0.0289996
ADGRG6 adhesion G protein-coupled receptor G6 0.0289365
EPB41 erythrocyte membrane protein band 4.1 0.028473
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 0.0281877
PRRC2C proline-rich coiled-coil 2C 0.0278186
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) 0.027305
LOC112694756 uncharaterized LOC112694756 0.027291
MYH9 myosin, heavy chain 9, non-muscle 0.0269726
CLIP1 CAP-GLY domain containing linker protein 1 0.026568
IFIH1 interferon induced with helicase C domain 1 0.0265295
KDM3A lysine (K)-specific demethylase 3A 0.0264797
CSDE1 cold shock domain containing E1, RNA-binding 0.0262201
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.026014
CEP350 centrosomal protein 350kDa 0.0259757
B2M beta-2-microglobulin 0.0258379
FAM13A family with sequence similarity 13, member A 0.0254699
TXNRD1 thioredoxin reductase 1 0.0253473
OAS2 2'-5'-oligoadenylate synthetase 2, 69/71kDa 0.0253417
RSAD2 radical S-adenosyl methionine domain containing 2 0.0251841
TRERF1 transcriptional regulating factor 1 0.0242725
DENND5B DENN/MADD domain containing 5B 0.0236122
ATRX alpha thalassemia/mental retardation syndrome X-linked 0.0231202
PTPRJ protein tyrosine phosphatase, receptor type, J 0.0230842
SPAG9 sperm associated antigen 9 0.0230081
SSH2 slingshot protein phosphatase 2 0.0229487
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0229087
RAD51B RAD51 paralog B 0.0227261
IFI6 interferon, alpha-inducible protein 6 0.0225514
TRIM56 tripartite motif containing 56 0.022439
MAML2 mastermind-like 2 (Drosophila) 0.0224251

decreased expression

Symbol Name Standardized Value
CAPRIN2 caprin family member 2 -0.113104
TMSB10 thymosin beta 10 -0.0939312
MT2A metallothionein 2A -0.0863771
SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 -0.0846773
PTMA prothymosin, alpha -0.0837459
TM4SF1 transmembrane 4 L six family member 1 -0.0800728
PDE10A phosphodiesterase 10A -0.0664364
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0640642
ZDHHC14 zinc finger, DHHC-type containing 14 -0.0632803
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0619978
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.0619142
SDK1 sidekick cell adhesion molecule 1 -0.0602134
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0588195
RAB7A RAB7A, member RAS oncogene family -0.0584068
EGR1 early growth response 1 -0.0582126
HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 -0.0579215
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0562011
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -0.0561467
TPT1 tumor protein, translationally-controlled 1 -0.0518682
ERRFI1 ERBB receptor feedback inhibitor 1 -0.0515411
CADM2 cell adhesion molecule 2 -0.0504453
NPAS2 neuronal PAS domain protein 2 -0.0492387
RPL35A ribosomal protein L35a -0.0478228
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 -0.0476805
ARHGAP5 Rho GTPase activating protein 5 -0.0445171
FMNL2 formin-like 2 -0.0440533
CSMD3 CUB and Sushi multiple domains 3 -0.0439986
CD44 CD44 molecule (Indian blood group) -0.0415002
PSD3 pleckstrin and Sec7 domain containing 3 -0.041281
RPS6 ribosomal protein S6 -0.041258
IL1RAPL1 interleukin 1 receptor accessory protein-like 1 -0.0409953
HMGA1 high mobility group AT-hook 1 -0.0408371
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0383995
WWTR1 WW domain containing transcription regulator 1 -0.0377947
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0373481
NAV2 neuron navigator 2 -0.0371176
ZSWIM6 zinc finger, SWIM-type containing 6 -0.03672
PTK2 protein tyrosine kinase 2 -0.0364023
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0359738
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 -0.0357995
SPRY4 sprouty homolog 4 (Drosophila) -0.0357488
MACF1 microtubule-actin crosslinking factor 1 -0.0356956
NT5E 5'-nucleotidase, ecto (CD73) -0.0355733
TOP1 topoisomerase (DNA) I -0.0355047
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 -0.0349033
PYGL phosphorylase, glycogen, liver -0.0348802
FOSL1 FOS-like antigen 1 -0.0343294
KMT2E lysine (K)-specific methyltransferase 2E -0.0341606
ADARB1 adenosine deaminase, RNA-specific, B1 -0.0337707
RPS19 ribosomal protein S19 -0.0335463
CMIP c-Maf inducing protein -0.0334454
TSC22D1 TSC22 domain family, member 1 -0.0333606
RTTN rotatin -0.0331828
MCTP1 multiple C2 domains, transmembrane 1 -0.032804
GLS2 glutaminase 2 (liver, mitochondrial) -0.0316999
SMURF1 SMAD specific E3 ubiquitin protein ligase 1 -0.0316896
TGM2 transglutaminase 2 -0.0316273
OSBPL8 oxysterol binding protein-like 8 -0.0305245
THSD4 thrombospondin, type I, domain containing 4 -0.0304744
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 -0.0304688
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0301928
NHSL1 NHS-like 1 -0.0300939
ZEB1 zinc finger E-box binding homeobox 1 -0.0299062
SLCO4A1 solute carrier organic anion transporter family, member 4A1 -0.0296484
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase -0.0289254
TNFRSF6B tumor necrosis factor receptor superfamily, member 6b, decoy -0.0288596
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0287868
RPS8 ribosomal protein S8 -0.0276241
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.0274668
ETV5 ets variant 5 -0.027006
EFNA5 ephrin-A5 -0.0266355
RPL37A ribosomal protein L37a -0.0264506
SPRED2 sprouty-related, EVH1 domain containing 2 -0.0252621
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 -0.025078
GMDS GDP-mannose 4,6-dehydratase -0.0250441
DENND1A DENN/MADD domain containing 1A -0.0247621
MCL1 myeloid cell leukemia 1 -0.024746
MARK3 MAP/microtubule affinity-regulating kinase 3 -0.0247237
UPP1 uridine phosphorylase 1 -0.0244567
SNX14 sorting nexin 14 -0.024424
RPL36 ribosomal protein L36 -0.0238257
PIAS2 protein inhibitor of activated STAT, 2 -0.0237767
TNFRSF10D tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain -0.0236808
FLNB filamin B, beta -0.0233271
CDK6 cyclin-dependent kinase 6 -0.0232101
RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 -0.0230917
POLA1 polymerase (DNA directed), alpha 1, catalytic subunit -0.02303
RPL26 ribosomal protein L26 -0.022539
PSMD14 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 -0.0224814
ALDH1A3 aldehyde dehydrogenase 1 family, member A3 -0.0223782
KPNA4 karyopherin alpha 4 (importin alpha 3) -0.0223351
STK17A serine/threonine kinase 17a -0.0222257
ASAP2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 -0.0221584
INTS6 integrator complex subunit 6 -0.0221219
BCAR3 breast cancer anti-estrogen resistance 3 -0.0220737
FAF1 Fas (TNFRSF6) associated factor 1 -0.0218974
ZNF217 zinc finger protein 217 -0.0218203
RPLP1 ribosomal protein, large, P1 -0.0217446
RPL28 ribosomal protein L28 -0.0215191
ITPR3 inositol 1,4,5-trisphosphate receptor, type 3 -0.0214613