Trifluridine_KATO III Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Trifluridine perturbation in KATO III cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Trifluridine_KATO III drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.289644
CEACAM5 carcinoembryonic antigen-related cell adhesion molecule 5 0.177069
MAML2 mastermind-like 2 (Drosophila) 0.103181
LCN2 lipocalin 2 0.0915294
ITGA6 integrin, alpha 6 0.0906447
PTMA prothymosin, alpha 0.0807445
IFI27 interferon, alpha-inducible protein 27 0.0787109
B2M beta-2-microglobulin 0.0755836
EZR ezrin 0.0718136
IFI6 interferon, alpha-inducible protein 6 0.0658586
TMSB10 thymosin beta 10 0.0640248
EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 0.063276
RPS3 ribosomal protein S3 0.0616211
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide 0.0568582
RPS12 ribosomal protein S12 0.0541597
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0537688
ASPH aspartate beta-hydroxylase 0.0523022
CLDN4 claudin 4 0.0506315
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0505075
KRT18 keratin 18, type I 0.0504556
ENO1 enolase 1, (alpha) 0.0494587
ANXA2 annexin A2 0.0488121
ANXA1 annexin A1 0.0488067
LMNA lamin A/C 0.0484025
BAIAP2L1 BAI1-associated protein 2-like 1 0.0454835
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0433472
EHBP1 EH domain binding protein 1 0.0391381
ATF5 activating transcription factor 5 0.039095
CEMIP cell migration inducing protein, hyaluronan binding 0.0385127
LIMA1 LIM domain and actin binding 1 0.03736
PSMA7 proteasome (prosome, macropain) subunit, alpha type, 7 0.0360802
RPS8 ribosomal protein S8 0.035628
EFNA5 ephrin-A5 0.0354355
SET SET nuclear proto-oncogene 0.0352743
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0347966
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.0345112
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 0.0344728
CBX3 chromobox homolog 3 0.0344358
PFN1 profilin 1 0.0342943
KRT19 keratin 19, type I 0.0342172
MACC1 metastasis associated in colon cancer 1 0.0340478
BCL2L1 BCL2-like 1 0.0339864
CD9 CD9 molecule 0.0336754
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0329275
NCEH1 neutral cholesterol ester hydrolase 1 0.0326411
MYADM myeloid-associated differentiation marker 0.0323067
HLA-A major histocompatibility complex, class I, A 0.0322336
IFITM3 interferon induced transmembrane protein 3 0.0316626
HMGA1 high mobility group AT-hook 1 0.0312565
TUBA1B tubulin, alpha 1b 0.0312459
KLK10 kallikrein-related peptidase 10 0.030673
MBNL1 muscleblind-like splicing regulator 1 0.0303174
LAMA4 laminin, alpha 4 0.0302508
S100A6 S100 calcium binding protein A6 0.0301271
GDA guanine deaminase 0.0299099
AGR3 anterior gradient 3 0.0297767
DSTN destrin (actin depolymerizing factor) 0.0297193
FTH1 ferritin, heavy polypeptide 1 0.0295513
SLTM SAFB-like, transcription modulator 0.0295082
TUBB4B tubulin, beta 4B class IVb 0.0291464
TPM3 tropomyosin 3 0.0288858
FOSB FBJ murine osteosarcoma viral oncogene homolog B 0.0288092
AREG amphiregulin 0.0284254
RPS17 ribosomal protein S17 0.0283344
S100A11 S100 calcium binding protein A11 0.0277292
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.0276566
KLF6 Kruppel-like factor 6 0.0274299
RRM2 ribonucleotide reductase M2 0.027303
TPI1 triosephosphate isomerase 1 0.0262889
TPT1 tumor protein, translationally-controlled 1 0.0262753
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta 0.0261827
LDHA lactate dehydrogenase A 0.0261264
PPARG peroxisome proliferator-activated receptor gamma 0.025883
ANP32B acidic (leucine-rich) nuclear phosphoprotein 32 family, member B 0.0258797
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.0257928
NDUFA4 NDUFA4, mitochondrial complex associated 0.0255421
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 0.0252667
S100A9 S100 calcium binding protein A9 0.0252636
BACE2 beta-site APP-cleaving enzyme 2 0.0250814
SERPINB1 serpin peptidase inhibitor, clade B (ovalbumin), member 1 0.0247479
HMGB2 high mobility group box 2 0.0246802
EGR1 early growth response 1 0.0246801
RPL26 ribosomal protein L26 0.0243552
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0242157
ALCAM activated leukocyte cell adhesion molecule 0.0239739
CYP3A5 cytochrome P450, family 3, subfamily A, polypeptide 5 0.023834
ARPC1B actin related protein 2/3 complex, subunit 1B, 41kDa 0.0236833
TMC5 transmembrane channel-like 5 0.0234347
ST14 suppression of tumorigenicity 14 (colon carcinoma) 0.0233036
MT2A metallothionein 2A 0.0231342
RPS7 ribosomal protein S7 0.0230455
COX6C cytochrome c oxidase subunit VIc 0.023034
SNRPB small nuclear ribonucleoprotein polypeptides B and B1 0.0229033
SRRM2 serine/arginine repetitive matrix 2 0.022866
JUP junction plakoglobin 0.0227226
UGCG UDP-glucose ceramide glucosyltransferase 0.0226658
CEACAM6 carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen) 0.0225466
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.022408
MKI67 marker of proliferation Ki-67 0.0223826
LPP LIM domain containing preferred translocation partner in lipoma 0.0223061

decreased expression

Symbol Name Standardized Value
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.279384
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.173219
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.117974
EIF1 eukaryotic translation initiation factor 1 -0.101693
PDIA4 protein disulfide isomerase family A, member 4 -0.0798495
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0763512
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 -0.0685257
AGR2 anterior gradient 2 -0.0658602
UBC ubiquitin C -0.0638321
ASNS asparagine synthetase (glutamine-hydrolyzing) -0.0620395
GOLGA4 golgin A4 -0.0596398
IARS1 isoleucyl-tRNA synthetase 1 -0.0594077
H1-0 H1.0 linker histone -0.0585988
AHNAK AHNAK nucleoprotein -0.0578866
CD2AP CD2-associated protein -0.0575896
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0555912
LOC112694756 uncharaterized LOC112694756 -0.053609
ZCCHC7 zinc finger, CCHC domain containing 7 -0.0519794
GARS1 glycyl-tRNA synthetase 1 -0.0513375
SEL1L sel-1 suppressor of lin-12-like (C. elegans) -0.0479891
CANX calnexin -0.0471802
RRBP1 ribosome binding protein 1 -0.0459094
EIF4A2 eukaryotic translation initiation factor 4A2 -0.0456918
SEC31A SEC31 homolog A (S. cerevisiae) -0.0453103
KDM3A lysine (K)-specific demethylase 3A -0.04432
RAB1A RAB1A, member RAS oncogene family -0.0432606
RBM39 RNA binding motif protein 39 -0.0426194
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa -0.0425532
BIRC6 baculoviral IAP repeat containing 6 -0.0418615
FGFR2 fibroblast growth factor receptor 2 -0.0415878
PPIB peptidylprolyl isomerase B (cyclophilin B) -0.0398481
COPB2 coatomer protein complex, subunit beta 2 (beta prime) -0.0398091
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0397861
HDLBP high density lipoprotein binding protein -0.0390719
COG5 component of oligomeric golgi complex 5 -0.0387245
N4BP2L2 NEDD4 binding protein 2-like 2 -0.0384778
DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 -0.0383664
GOLGB1 golgin B1 -0.0379776
CNOT1 CCR4-NOT transcription complex, subunit 1 -0.0373231
ANKRD11 ankyrin repeat domain 11 -0.0365459
ACTG1 actin gamma 1 -0.0363964
ZFAND3 zinc finger, AN1-type domain 3 -0.0359121
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 -0.0355741
ARCN1 archain 1 -0.0351954
LMAN1 lectin, mannose-binding, 1 -0.0351689
MINDY2 MINDY lysine 48 deubiquitinase 2 -0.0344329
AKAP9 A kinase (PRKA) anchor protein 9 -0.0343997
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa -0.0343181
PDIA6 protein disulfide isomerase family A, member 6 -0.0342526
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0339691
PARP4 poly (ADP-ribose) polymerase family, member 4 -0.0327192
WDR45B WD repeat domain 45B -0.0324789
CDK13 cyclin-dependent kinase 13 -0.0324354
ANKHD1 ankyrin repeat and KH domain containing 1 -0.0322357
UBR5 ubiquitin protein ligase E3 component n-recognin 5 -0.0317789
UMAD1 UBAP1-MVB12-associated (UMA) domain containing 1 -0.0316455
WARS1 tryptophanyl-tRNA synthetase 1 -0.031419
S100A10 S100 calcium binding protein A10 -0.0312538
PMM2 phosphomannomutase 2 -0.0311588
RPL35A ribosomal protein L35a -0.0309257
NDRG1 N-myc downstream regulated 1 -0.0303957
ATM ATM serine/threonine kinase -0.0288978
COPA coatomer protein complex, subunit alpha -0.0281273
HLA-E major histocompatibility complex, class I, E -0.0280461
COG6 component of oligomeric golgi complex 6 -0.0276992
HLA-C major histocompatibility complex, class I, C -0.0276716
KLHL29 kelch-like family member 29 -0.0275937
INSIG1 insulin induced gene 1 -0.0275599
SPAG9 sperm associated antigen 9 -0.0273282
MON2 MON2 homolog (S. cerevisiae) -0.0270628
KRT8 keratin 8, type II -0.0269597
RTN3 reticulon 3 -0.026932
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.0268872
EPB41 erythrocyte membrane protein band 4.1 -0.0267521
HSD17B12 hydroxysteroid (17-beta) dehydrogenase 12 -0.0266691
EXT1 exostosin glycosyltransferase 1 -0.0265751
SLC25A36 solute carrier family 25 (pyrimidine nucleotide carrier), member 36 -0.0264279
RPL8 ribosomal protein L8 -0.0258125
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0257178
STK24 serine/threonine kinase 24 -0.0255424
SEC24D SEC24 family member D -0.025369
GLG1 golgi glycoprotein 1 -0.0252174
FNIP1 folliculin interacting protein 1 -0.0250732
ARFGEF2 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) -0.0250489
USO1 USO1 vesicle transport factor -0.0248531
ARHGAP32 Rho GTPase activating protein 32 -0.0247451
RSF1 remodeling and spacing factor 1 -0.0244328
TXNRD1 thioredoxin reductase 1 -0.0243716
SLC38A1 solute carrier family 38, member 1 -0.0242187
GPX2 glutathione peroxidase 2 -0.0241857
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0241678
RSL1D1 ribosomal L1 domain containing 1 -0.0240034
KMT2A lysine (K)-specific methyltransferase 2A -0.0239909
TMSB4X thymosin beta 4, X-linked -0.0238798
DLG1 discs, large homolog 1 (Drosophila) -0.0238499
TNKS tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase -0.0236984
AFTPH aftiphilin -0.0236545
PNPLA8 patatin-like phospholipase domain containing 8 -0.0234474
LARP4B La ribonucleoprotein domain family, member 4B -0.0234173
PUM2 pumilio RNA-binding family member 2 -0.023298