Trifluridine_LS 180 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Trifluridine perturbation in LS 180 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Trifluridine_LS 180 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.153888
FTH1 ferritin, heavy polypeptide 1 0.110616
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 0.0881593
KRT18 keratin 18, type I 0.0844213
MUC6 mucin 6, oligomeric mucus/gel-forming 0.0775137
LDHA lactate dehydrogenase A 0.0763343
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.0644219
ALCAM activated leukocyte cell adhesion molecule 0.0629255
MUC5AC mucin 5AC, oligomeric mucus/gel-forming 0.0533566
SOX9 SRY (sex determining region Y)-box 9 0.0512931
TPI1 triosephosphate isomerase 1 0.0495321
PFN1 profilin 1 0.0474359
FAT1 FAT atypical cadherin 1 0.0470496
SERPINB1 serpin peptidase inhibitor, clade B (ovalbumin), member 1 0.045839
PELI1 pellino E3 ubiquitin protein ligase 1 0.0426971
MT2A metallothionein 2A 0.041498
GSTP1 glutathione S-transferase pi 1 0.0408187
MLEC malectin 0.0406425
PTBP3 polypyrimidine tract binding protein 3 0.0399622
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0398786
RPL18 ribosomal protein L18 0.0395463
CEMIP cell migration inducing protein, hyaluronan binding 0.0392891
CEACAM5 carcinoembryonic antigen-related cell adhesion molecule 5 0.0359749
MUC17 mucin 17, cell surface associated 0.0358773
FTL ferritin, light polypeptide 0.0355253
SON SON DNA binding protein 0.0351688
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0344833
TUBA1B tubulin, alpha 1b 0.0342043
FOXP1 forkhead box P1 0.0328745
ITGA6 integrin, alpha 6 0.0328148
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.0327612
KRT19 keratin 19, type I 0.0322713
CBX3 chromobox homolog 3 0.0317758
CADPS Ca++-dependent secretion activator 0.0316647
HMGA1 high mobility group AT-hook 1 0.0314976
LGR4 leucine-rich repeat containing G protein-coupled receptor 4 0.0312831
RPS12 ribosomal protein S12 0.0312773
PERP PERP, TP53 apoptosis effector 0.0312574
MT1E metallothionein 1E 0.0304687
RPLP0 ribosomal protein, large, P0 0.0302767
SERBP1 SERPINE1 mRNA binding protein 1 0.0301734
RPS2 ribosomal protein S2 0.0293408
HMGB2 high mobility group box 2 0.0292263
SRRM1 serine/arginine repetitive matrix 1 0.0290448
KCNK1 potassium channel, two pore domain subfamily K, member 1 0.0289783
ZFP36L2 ZFP36 ring finger protein-like 2 0.0287185
LMO7 LIM domain 7 0.0284595
KDELR1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 0.0280956
CLCN3 chloride channel, voltage-sensitive 3 0.0273364
PTPRR protein tyrosine phosphatase, receptor type, R 0.0262891
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.02613
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0260898
ABHD2 abhydrolase domain containing 2 0.0260347
MYC v-myc avian myelocytomatosis viral oncogene homolog 0.0257722
S100A6 S100 calcium binding protein A6 0.0253022
PPP3CA protein phosphatase 3, catalytic subunit, alpha isozyme 0.0248217
USP6NL USP6 N-terminal like 0.0248126
TUBB4B tubulin, beta 4B class IVb 0.0241448
TPM3 tropomyosin 3 0.0240006
MUC5B mucin 5B, oligomeric mucus/gel-forming 0.0237737
GAREM1 GRB2 associated regulator of MAPK1 subtype 1 0.0231264
ENO1 enolase 1, (alpha) 0.022886
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 0.0228438
TAGLN2 transgelin 2 0.0226461
TNS4 tensin 4 0.0225154
RPL17-C18ORF32 RPL17-C18orf32 readthrough 0.0224836
SERINC5 serine incorporator 5 0.0222993
KLK10 kallikrein-related peptidase 10 0.0221023
PRKDC protein kinase, DNA-activated, catalytic polypeptide 0.0219826
SRSF11 serine/arginine-rich splicing factor 11 0.0219812
PRDX1 peroxiredoxin 1 0.0219647
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0218419
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0214263
TXN2 thioredoxin 2 0.0204834
ABHD17C abhydrolase domain containing 17C 0.0203724
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 0.020279
CLDN7 claudin 7 0.0202611
RPL21 ribosomal protein L21 0.0202556
RRM2 ribonucleotide reductase M2 0.0201931
SMC4 structural maintenance of chromosomes 4 0.0201203
NEDD9 neural precursor cell expressed, developmentally down-regulated 9 0.0199919
CLIC1 chloride intracellular channel 1 0.0198931
FANCI Fanconi anemia, complementation group I 0.019569
RPS7 ribosomal protein S7 0.0195684
ZFP36L1 ZFP36 ring finger protein-like 1 0.0194816
RPL7 ribosomal protein L7 0.0193533
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa 0.0192851
PA2G4 proliferation-associated 2G4, 38kDa 0.0192743
BZW1 basic leucine zipper and W2 domains 1 0.0191482
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 0.0191252
PPP1R9A protein phosphatase 1, regulatory subunit 9A 0.0188443
MGST1 microsomal glutathione S-transferase 1 0.0188261
NDUFA4 NDUFA4, mitochondrial complex associated 0.0187602
SLC25A5 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 0.0187137
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats 0.0186054
KLF6 Kruppel-like factor 6 0.0185041
SRP14 signal recognition particle 14kDa (homologous Alu RNA binding protein) 0.018453
RPL35 ribosomal protein L35 0.0184373
DENND4C DENN/MADD domain containing 4C 0.0184055
DPY19L1 dpy-19-like 1 (C. elegans) 0.0181626

decreased expression

Symbol Name Standardized Value
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.275828
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.246511
TPT1 tumor protein, translationally-controlled 1 -0.166492
VCL vinculin -0.138818
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.134867
RPL35A ribosomal protein L35a -0.106057
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0976141
AHNAK AHNAK nucleoprotein -0.0947065
ACTG1 actin gamma 1 -0.0882179
RPS6 ribosomal protein S6 -0.0792185
RPL34 ribosomal protein L34 -0.0705669
RPS27A ribosomal protein S27a -0.0697531
UBC ubiquitin C -0.0696689
PTMA prothymosin, alpha -0.0669199
AGR2 anterior gradient 2 -0.066785
PIGR polymeric immunoglobulin receptor -0.0659052
FLNB filamin B, beta -0.0646752
IER3 immediate early response 3 -0.0635522
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 -0.0620135
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0574934
RPS29 ribosomal protein S29 -0.057076
MYO1E myosin IE -0.0567652
FBXO11 F-box protein 11 -0.0549001
EXT1 exostosin glycosyltransferase 1 -0.0548964
GOLGA4 golgin A4 -0.0545404
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0539017
RPS23 ribosomal protein S23 -0.051895
NDRG1 N-myc downstream regulated 1 -0.0513666
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0504964
IARS1 isoleucyl-tRNA synthetase 1 -0.0500522
TPM4 tropomyosin 4 -0.0484999
HERPUD1 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 -0.0482785
CALR calreticulin -0.0479628
RPS24 ribosomal protein S24 -0.0476307
CANX calnexin -0.046735
ANKRD11 ankyrin repeat domain 11 -0.045652
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa -0.0451432
GPHN gephyrin -0.0442832
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase -0.0440175
GMDS GDP-mannose 4,6-dehydratase -0.0436013
SEC31A SEC31 homolog A (S. cerevisiae) -0.0434854
MYH9 myosin, heavy chain 9, non-muscle -0.0432976
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0424311
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0420865
RPL23 ribosomal protein L23 -0.0405981
BTBD9 BTB (POZ) domain containing 9 -0.040104
NPSR1 neuropeptide S receptor 1 -0.0398823
ONECUT3 one cut homeobox 3 -0.0394696
RPS11 ribosomal protein S11 -0.0394561
RPLP1 ribosomal protein, large, P1 -0.0385003
RAB1A RAB1A, member RAS oncogene family -0.0384029
GRB10 growth factor receptor-bound protein 10 -0.0382338
PDIA4 protein disulfide isomerase family A, member 4 -0.0382241
TFF3 trefoil factor 3 (intestinal) -0.0379518
HSPA9 heat shock 70kDa protein 9 (mortalin) -0.0379152
ANTXR2 anthrax toxin receptor 2 -0.0373197
RPL38 ribosomal protein L38 -0.0365163
RPL31 ribosomal protein L31 -0.0362815
GLG1 golgi glycoprotein 1 -0.036153
SETD5 SET domain containing 5 -0.0356691
RBM39 RNA binding motif protein 39 -0.0356588
S100A10 S100 calcium binding protein A10 -0.035549
ZFAND3 zinc finger, AN1-type domain 3 -0.0351199
EIF1 eukaryotic translation initiation factor 1 -0.0348003
RAP1B RAP1B, member of RAS oncogene family -0.0340733
USP53 ubiquitin specific peptidase 53 -0.0340169
DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 -0.0338188
RPS8 ribosomal protein S8 -0.0336846
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0336101
KDM3A lysine (K)-specific demethylase 3A -0.0334313
CUX1 cut-like homeobox 1 -0.0331755
ANKRD10 ankyrin repeat domain 10 -0.0325103
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0317681
MBNL2 muscleblind-like splicing regulator 2 -0.0312753
HM13 histocompatibility (minor) 13 -0.0312302
PALLD palladin, cytoskeletal associated protein -0.0311566
ACTN4 actinin, alpha 4 -0.0311092
MYH14 myosin, heavy chain 14, non-muscle -0.0311077
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0308678
TAS2R14 taste receptor, type 2, member 14 -0.0306586
EIF4A2 eukaryotic translation initiation factor 4A2 -0.0302948
RPL37A ribosomal protein L37a -0.0302189
ATXN1 ataxin 1 -0.0301394
PPIB peptidylprolyl isomerase B (cyclophilin B) -0.0300472
BTG1 B-cell translocation gene 1, anti-proliferative -0.0297871
INTS6 integrator complex subunit 6 -0.0296975
FNDC3B fibronectin type III domain containing 3B -0.0294936
TUFT1 tuftelin 1 -0.0294237
ATP2A2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 -0.0293836
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) -0.0292892
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.02911
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0289402
RPLP2 ribosomal protein, large, P2 -0.0286271
PDLIM5 PDZ and LIM domain 5 -0.0283996
RPS25 ribosomal protein S25 -0.0282005
FDPS farnesyl diphosphate synthase -0.0280752
SEC24D SEC24 family member D -0.0280226
KDM4B lysine (K)-specific demethylase 4B -0.0278429
PPP2R5C protein phosphatase 2, regulatory subunit B', gamma -0.027814
SEL1L sel-1 suppressor of lin-12-like (C. elegans) -0.0277483