Trifluridine_SNU-1 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Trifluridine perturbation in SNU-1 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Trifluridine_SNU-1 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
PTMA prothymosin, alpha 0.320289
TPT1 tumor protein, translationally-controlled 1 0.149019
VCL vinculin 0.120563
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0963215
RPS8 ribosomal protein S8 0.0885872
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.087059
ENO1 enolase 1, (alpha) 0.0858166
RPS3 ribosomal protein S3 0.0841132
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0828459
MKI67 marker of proliferation Ki-67 0.0804343
PDE4B phosphodiesterase 4B, cAMP-specific 0.075012
SMC4 structural maintenance of chromosomes 4 0.0702764
RPL26 ribosomal protein L26 0.0668064
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0654145
RPS12 ribosomal protein S12 0.0637387
TMSB4X thymosin beta 4, X-linked 0.0624478
TJP1 tight junction protein 1 0.0607366
KPNB1 karyopherin (importin) beta 1 0.0602143
RPLP0 ribosomal protein, large, P0 0.0574514
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.0558752
LDHA lactate dehydrogenase A 0.0551174
PKM pyruvate kinase, muscle 0.0528825
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 0.0519618
TPI1 triosephosphate isomerase 1 0.0518447
B3GALT1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 0.0517742
RACK1 receptor for activated C kinase 1 0.0515798
HSPB1 heat shock 27kDa protein 1 0.0514631
ZEB1 zinc finger E-box binding homeobox 1 0.0496617
GNAS GNAS complex locus 0.0495892
RPL31 ribosomal protein L31 0.0490612
EBNA1BP2 EBNA1 binding protein 2 0.0488954
CENPF centromere protein F, 350/400kDa 0.0486672
BMP10 bone morphogenetic protein 10 0.0484341
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.0483126
NPAS2 neuronal PAS domain protein 2 0.0480808
RPS2 ribosomal protein S2 0.0479513
TUBB4B tubulin, beta 4B class IVb 0.0473446
NAP1L1 nucleosome assembly protein 1-like 1 0.0469888
ANXA1 annexin A1 0.0465894
DUSP6 dual specificity phosphatase 6 0.0457847
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0444093
PGK1 phosphoglycerate kinase 1 0.0441135
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0439045
RPS6 ribosomal protein S6 0.043834
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0437458
RPL9 ribosomal protein L9 0.042367
RPS13 ribosomal protein S13 0.0416079
S100A4 S100 calcium binding protein A4 0.0408572
DIAPH3 diaphanous-related formin 3 0.0408566
NQO1 NAD(P)H dehydrogenase, quinone 1 0.0407467
KIF5B kinesin family member 5B 0.040618
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.0404607
TPM4 tropomyosin 4 0.0398327
ALDH3A2 aldehyde dehydrogenase 3 family, member A2 0.0385729
SET SET nuclear proto-oncogene 0.0384217
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0377043
MYO5C myosin VC 0.0371412
RPL37A ribosomal protein L37a 0.0367259
MATR3 matrin 3 0.0362427
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta 0.0360172
FOXP1 forkhead box P1 0.0359391
RPL36A ribosomal protein L36a 0.0357369
TPX2 TPX2, microtubule-associated 0.0356985
ATAD2 ATPase family, AAA domain containing 2 0.0356157
RPS27A ribosomal protein S27a 0.0354733
TUBA1B tubulin, alpha 1b 0.0347605
CYB5B cytochrome b5 type B (outer mitochondrial membrane) 0.0345847
DLG1 discs, large homolog 1 (Drosophila) 0.0345429
GLI3 GLI family zinc finger 3 0.0344819
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0340136
MYL12B myosin, light chain 12B, regulatory 0.0339399
ADAM10 ADAM metallopeptidase domain 10 0.033732
ANLN anillin, actin binding protein 0.0329896
RPLP2 ribosomal protein, large, P2 0.0328343
ROCK2 Rho-associated, coiled-coil containing protein kinase 2 0.0326645
CSDE1 cold shock domain containing E1, RNA-binding 0.0321241
RRM2 ribonucleotide reductase M2 0.0318654
RPL7A ribosomal protein L7a 0.0317238
HDAC9 histone deacetylase 9 0.0316075
SMC3 structural maintenance of chromosomes 3 0.03104
UNC13A unc-13 homolog A (C. elegans) 0.0309891
TUBB tubulin, beta class I 0.0309481
NT5C2 5'-nucleotidase, cytosolic II 0.0305827
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0305386
RPL7 ribosomal protein L7 0.0305196
SLC25A5 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 0.0303701
RPS17 ribosomal protein S17 0.0302087
TM4SF1 transmembrane 4 L six family member 1 0.0300334
HMGB2 high mobility group box 2 0.0299363
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 0.0298601
CPED1 cadherin-like and PC-esterase domain containing 1 0.0298586
PA2G4 proliferation-associated 2G4, 38kDa 0.0295791
CSE1L CSE1 chromosome segregation 1-like (yeast) 0.0291811
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 0.0288012
MACROD2 MACRO domain containing 2 0.0287275
HSPH1 heat shock 105kDa/110kDa protein 1 0.0286004
LDHB lactate dehydrogenase B 0.0285215
NOP56 NOP56 ribonucleoprotein 0.0279625
LOC102724023 ES1 protein homolog, mitochondrial 0.0278905
RPL18 ribosomal protein L18 0.0276623

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.160277
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0529386
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0454293
AKAP9 A kinase (PRKA) anchor protein 9 -0.0424853
RTN4 reticulon 4 -0.0403014
RPL35A ribosomal protein L35a -0.0399509
FLNB filamin B, beta -0.0366816
ANK2 ankyrin 2, neuronal -0.0365734
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 -0.0322283
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0317251
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0312091
NBAS neuroblastoma amplified sequence -0.0308944
CCNL1 cyclin L1 -0.0267531
GARS1 glycyl-tRNA synthetase 1 -0.0264281
JMJD1C jumonji domain containing 1C -0.02575
RPS23 ribosomal protein S23 -0.0254039
KDM4C lysine (K)-specific demethylase 4C -0.0253441
TBC1D22A TBC1 domain family, member 22A -0.025325
IARS1 isoleucyl-tRNA synthetase 1 -0.0251549
ETNK1 ethanolamine kinase 1 -0.0248551
ASNS asparagine synthetase (glutamine-hydrolyzing) -0.0246436
ZNF292 zinc finger protein 292 -0.0239557
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0235313
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 -0.0231227
PIK3C2A phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha -0.0227933
BRD2 bromodomain containing 2 -0.022676
SSBP2 single-stranded DNA binding protein 2 -0.0220383
RICTOR RPTOR independent companion of MTOR, complex 2 -0.0210655
ARRDC3 arrestin domain containing 3 -0.021043
COG5 component of oligomeric golgi complex 5 -0.0206554
SBF2 SET binding factor 2 -0.0206422
UBA6 ubiquitin-like modifier activating enzyme 6 -0.020432
PTEN phosphatase and tensin homolog -0.0203363
SEC31A SEC31 homolog A (S. cerevisiae) -0.0202169
ARHGAP12 Rho GTPase activating protein 12 -0.0200864
DSCAM Down syndrome cell adhesion molecule -0.0199538
MAP1LC3B microtubule-associated protein 1 light chain 3 beta -0.0195981
TMEM41B transmembrane protein 41B -0.0193925
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0191995
RALGAPA2 Ral GTPase activating protein, alpha subunit 2 (catalytic) -0.0184954
MON2 MON2 homolog (S. cerevisiae) -0.018492
ATXN1 ataxin 1 -0.018279
ARF4 ADP-ribosylation factor 4 -0.0182155
POTEF POTE ankyrin domain family, member F -0.0181664
ATP5F1B ATP synthase F1 subunit beta -0.0180103
PDPK1 3-phosphoinositide dependent protein kinase 1 -0.0178364
PICALM phosphatidylinositol binding clathrin assembly protein -0.017761
PCBP2 poly(rC) binding protein 2 -0.0176431
DIAPH2 diaphanous-related formin 2 -0.0175958
RPL3 ribosomal protein L3 -0.0175407
UBC ubiquitin C -0.0175231
PAN3 PAN3 poly(A) specific ribonuclease subunit -0.0175173
SREBF2 sterol regulatory element binding transcription factor 2 -0.0173267
ZCCHC7 zinc finger, CCHC domain containing 7 -0.0173161
TPD52 tumor protein D52 -0.0169065
TAPBP TAP binding protein (tapasin) -0.0168812
COG6 component of oligomeric golgi complex 6 -0.0166641
TTC3 tetratricopeptide repeat domain 3 -0.0165762
NFKB2 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) -0.0165319
GSK3B glycogen synthase kinase 3 beta -0.0164994
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase -0.0163971
RUNX1 runt-related transcription factor 1 -0.0162922
ATOSA atos homolog A -0.0162602
OLA1 Obg-like ATPase 1 -0.0160468
ZNF638 zinc finger protein 638 -0.0159963
EIF4A2 eukaryotic translation initiation factor 4A2 -0.0158557
RAB1A RAB1A, member RAS oncogene family -0.0157767
NCEH1 neutral cholesterol ester hydrolase 1 -0.0157647
INTS6 integrator complex subunit 6 -0.0156902
LENG8 leukocyte receptor cluster (LRC) member 8 -0.0156715
TENT4A terminal nucleotidyltransferase 4A -0.015665
BCKDHB branched chain keto acid dehydrogenase E1, beta polypeptide -0.0156536
IGF1R insulin-like growth factor 1 receptor -0.0155669
TSC22D2 TSC22 domain family, member 2 -0.0155507
HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) -0.0154666
GPBP1L1 GC-rich promoter binding protein 1-like 1 -0.0154252
SAMD4A sterile alpha motif domain containing 4A -0.0153105
PTBP2 polypyrimidine tract binding protein 2 -0.0152993
ADAM9 ADAM metallopeptidase domain 9 -0.015283
UBP1 upstream binding protein 1 (LBP-1a) -0.0152789
KMT2E lysine (K)-specific methyltransferase 2E -0.0152587
MAP3K2 mitogen-activated protein kinase kinase kinase 2 -0.0151397
BAZ2A bromodomain adjacent to zinc finger domain, 2A -0.015123
CCDC93 coiled-coil domain containing 93 -0.0149663
CABIN1 calcineurin binding protein 1 -0.0148755
ARHGEF10 Rho guanine nucleotide exchange factor (GEF) 10 -0.0148713
HSPA9 heat shock 70kDa protein 9 (mortalin) -0.0148669
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b -0.0148612
DENND4A DENN/MADD domain containing 4A -0.0148542
SEC24D SEC24 family member D -0.0147421
WDR26 WD repeat domain 26 -0.0146946
RHBDD1 rhomboid domain containing 1 -0.0146365
EXT1 exostosin glycosyltransferase 1 -0.0146174
GOLGA4 golgin A4 -0.0145876
N4BP2L2 NEDD4 binding protein 2-like 2 -0.0145704
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0145588
INSIG1 insulin induced gene 1 -0.0145267
TXNRD1 thioredoxin reductase 1 -0.0144805
KIAA1328 KIAA1328 -0.0144368
TDRD3 tudor domain containing 3 -0.0144194