Trimetrexate_Hs 766T Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Trimetrexate perturbation in Hs 766T cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Trimetrexate_Hs 766T drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
RPS6 ribosomal protein S6 0.122949
LMO7 LIM domain 7 0.118106
MT2A metallothionein 2A 0.108701
MYOF myoferlin 0.0879025
PDE4D phosphodiesterase 4D, cAMP-specific 0.0839704
RPS8 ribosomal protein S8 0.0730826
DSCAM Down syndrome cell adhesion molecule 0.0678142
CD44 CD44 molecule (Indian blood group) 0.0666909
RAI14 retinoic acid induced 14 0.0648242
TRIO trio Rho guanine nucleotide exchange factor 0.0631606
PDLIM5 PDZ and LIM domain 5 0.0601052
NRIP1 nuclear receptor interacting protein 1 0.0559158
NFATC2 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 0.0557894
RASAL2 RAS protein activator like 2 0.0530494
AKAP13 A kinase (PRKA) anchor protein 13 0.0522018
INTS6 integrator complex subunit 6 0.0497938
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0493349
RPS12 ribosomal protein S12 0.0491446
FNDC3B fibronectin type III domain containing 3B 0.0477954
FTH1 ferritin, heavy polypeptide 1 0.0462
ATP2B4 ATPase, Ca++ transporting, plasma membrane 4 0.0460813
PALM2AKAP2 PALM2 and AKAP2 fusion 0.0458865
DST dystonin 0.0458636
SMAD3 SMAD family member 3 0.0454925
SQSTM1 sequestosome 1 0.0451289
PICALM phosphatidylinositol binding clathrin assembly protein 0.044659
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0425788
EFNA5 ephrin-A5 0.0424107
DOK5 docking protein 5 0.0423618
MBNL1 muscleblind-like splicing regulator 1 0.0423138
ST3GAL6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 0.0421338
ATXN1 ataxin 1 0.0419282
CDKN2A cyclin-dependent kinase inhibitor 2A 0.0418072
ALCAM activated leukocyte cell adhesion molecule 0.0416395
ZSWIM6 zinc finger, SWIM-type containing 6 0.0415689
SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 0.0391231
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.0390722
SIK3 SIK family kinase 3 0.0387663
JMJD1C jumonji domain containing 1C 0.0380782
TGM2 transglutaminase 2 0.0378628
RNF217 ring finger protein 217 0.0378187
RPS2 ribosomal protein S2 0.0369807
SLK STE20-like kinase 0.0368202
LYST lysosomal trafficking regulator 0.0367946
RPL37 ribosomal protein L37 0.0366198
PSD3 pleckstrin and Sec7 domain containing 3 0.0359356
SEPTIN9 septin 9 0.0358781
PRRC2C proline-rich coiled-coil 2C 0.0351551
VMP1 vacuole membrane protein 1 0.0348303
EZR ezrin 0.0347781
PTK2 protein tyrosine kinase 2 0.0346417
MT1E metallothionein 1E 0.0341696
EXT1 exostosin glycosyltransferase 1 0.0340341
MSN moesin 0.0333307
IRS2 insulin receptor substrate 2 0.0329535
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0327534
RPS3 ribosomal protein S3 0.0325822
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 0.0323137
ANO6 anoctamin 6 0.0318823
MRPS6 mitochondrial ribosomal protein S6 0.0316731
HIVEP1 human immunodeficiency virus type I enhancer binding protein 1 0.0312479
BZW1 basic leucine zipper and W2 domains 1 0.0312167
CYSTM1 cysteine-rich transmembrane module containing 1 0.0304927
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats 0.0300215
SPIDR scaffolding protein involved in DNA repair 0.0299946
TSC22D1 TSC22 domain family, member 1 0.0299162
EGFR epidermal growth factor receptor 0.0299067
DIAPH1 diaphanous-related formin 1 0.0292406
SMURF1 SMAD specific E3 ubiquitin protein ligase 1 0.0287555
MBNL2 muscleblind-like splicing regulator 2 0.0284293
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0284228
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0283853
MEGF6 multiple EGF-like-domains 6 0.0282423
TJP1 tight junction protein 1 0.0280803
DOCK5 dedicator of cytokinesis 5 0.0280249
EIF5B eukaryotic translation initiation factor 5B 0.0279929
RERE arginine-glutamic acid dipeptide (RE) repeats 0.0279653
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 0.0277593
ANKRD11 ankyrin repeat domain 11 0.0276209
RPL37A ribosomal protein L37a 0.0275948
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0275902
LUZP1 leucine zipper protein 1 0.0274359
BCAR3 breast cancer anti-estrogen resistance 3 0.0272004
CNTNAP3 contactin associated protein-like 3 0.0269545
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) 0.0268634
UTRN utrophin 0.0268082
VEGFA vascular endothelial growth factor A 0.0266824
VCL vinculin 0.0264663
SLTM SAFB-like, transcription modulator 0.0262942
BARX2 BARX homeobox 2 0.0261749
SVIL supervillin 0.0260343
ARHGAP21 Rho GTPase activating protein 21 0.0255836
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0253716
PRELID2 PRELI domain containing 2 0.0248684
OSMR oncostatin M receptor 0.0246329
GOLGB1 golgin B1 0.0246134
CAMK2D calcium/calmodulin-dependent protein kinase II delta 0.0244245
RACK1 receptor for activated C kinase 1 0.0239582
HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 0.0239534
SPIRE1 spire-type actin nucleation factor 1 0.0238495

decreased expression

Symbol Name Standardized Value
TIMP3 TIMP metallopeptidase inhibitor 3 -0.182402
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.109388
IGF2 insulin-like growth factor 2 -0.0969902
PTMA prothymosin, alpha -0.0882127
TPT1 tumor protein, translationally-controlled 1 -0.0869294
S100A10 S100 calcium binding protein A10 -0.077084
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0747777
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0733795
NDRG1 N-myc downstream regulated 1 -0.0696184
ITGA6 integrin, alpha 6 -0.0622927
CLU clusterin -0.0613764
AHNAK AHNAK nucleoprotein -0.0588584
KRT17 keratin 17, type I -0.0587126
LDHA lactate dehydrogenase A -0.0567017
PGK1 phosphoglycerate kinase 1 -0.0532406
PHLDB2 pleckstrin homology-like domain, family B, member 2 -0.0520654
B2M beta-2-microglobulin -0.0498833
ANLN anillin, actin binding protein -0.0492986
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0474493
CAV1 caveolin 1, caveolae protein, 22kDa -0.0468901
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide -0.0468798
NAMPT nicotinamide phosphoribosyltransferase -0.0466567
HLA-B major histocompatibility complex, class I, B -0.045295
TMSB4X thymosin beta 4, X-linked -0.044818
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0447112
DDX60L DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like -0.0440682
EMP1 epithelial membrane protein 1 -0.0420255
PDIA3 protein disulfide isomerase family A, member 3 -0.0419576
KRT6A keratin 6A, type II -0.0418815
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 -0.0417331
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0395071
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.038441
ANXA2 annexin A2 -0.0383012
FLNB filamin B, beta -0.0376041
POTEF POTE ankyrin domain family, member F -0.0370295
CAPZA1 capping protein (actin filament) muscle Z-line, alpha 1 -0.0361507
ZMYND8 zinc finger, MYND-type containing 8 -0.0360735
CAP1 CAP, adenylate cyclase-associated protein 1 (yeast) -0.0359255
IFI44 interferon-induced protein 44 -0.0347457
KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 -0.0337075
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 -0.0328322
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.032081
VDAC1 voltage-dependent anion channel 1 -0.0319312
RIGI RNA sensor RIG-I -0.0318815
FUT8 fucosyltransferase 8 (alpha (1,6) fucosyltransferase) -0.031557
RICTOR RPTOR independent companion of MTOR, complex 2 -0.0313448
TAGLN2 transgelin 2 -0.0312536
S100A2 S100 calcium binding protein A2 -0.03125
LMNA lamin A/C -0.0309371
RBM39 RNA binding motif protein 39 -0.0304459
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0303365
H1-0 H1.0 linker histone -0.0298752
PJA2 praja ring finger 2, E3 ubiquitin protein ligase -0.0292673
ISG15 ISG15 ubiquitin-like modifier -0.0291876
MARCHF6 membrane associated ring-CH-type finger 6 -0.0287233
WSB1 WD repeat and SOCS box containing 1 -0.0283024
CD99 CD99 molecule -0.0282381
PLEC plectin -0.0281907
DSG2 desmoglein 2 -0.0281186
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.0275106
UBE2V1 ubiquitin-conjugating enzyme E2 variant 1 -0.0274937
ARPC5 actin related protein 2/3 complex, subunit 5, 16kDa -0.0273392
SH3BGRL3 SH3 domain binding glutamate-rich protein like 3 -0.026931
ACTG1 actin gamma 1 -0.0268749
RSAD2 radical S-adenosyl methionine domain containing 2 -0.0267973
HSPG2 heparan sulfate proteoglycan 2 -0.026786
RPL27A ribosomal protein L27a -0.026687
PLS3 plastin 3 -0.0266227
MYL12A myosin, light chain 12A, regulatory, non-sarcomeric -0.0265224
CANX calnexin -0.0258368
HMGA1 high mobility group AT-hook 1 -0.0255904
ZNFX1 zinc finger, NFX1-type containing 1 -0.0252975
MTPN myotrophin -0.0252118
PKM pyruvate kinase, muscle -0.0249611
SP100 SP100 nuclear antigen -0.0248332
CALR calreticulin -0.0248169
FLNA filamin A, alpha -0.0243239
GNAS GNAS complex locus -0.0243221
UBC ubiquitin C -0.0242259
C4BPB complement component 4 binding protein, beta -0.0240209
PFN1 profilin 1 -0.0237953
ARPC2 actin related protein 2/3 complex, subunit 2, 34kDa -0.023678
PTPRJ protein tyrosine phosphatase, receptor type, J -0.0234721
FOSL1 FOS-like antigen 1 -0.0233659
RPS24 ribosomal protein S24 -0.0233029
MYO10 myosin X -0.0233017
CLINT1 clathrin interactor 1 -0.0232973
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta -0.0231289
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0227904
MKI67 marker of proliferation Ki-67 -0.0226912
ABI3BP ABI family, member 3 (NESH) binding protein -0.0226888
TNFRSF10D tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain -0.0226462
CSNK1E casein kinase 1, epsilon -0.022557
ARF1 ADP-ribosylation factor 1 -0.0224577
SDCBP syndecan binding protein (syntenin) -0.0223665
GCC2 GRIP and coiled-coil domain containing 2 -0.022336
HELZ2 helicase with zinc finger 2, transcriptional coactivator -0.0222678
IFIH1 interferon induced with helicase C domain 1 -0.0218956
ATP5F1B ATP synthase F1 subunit beta -0.0217281
CCL5 chemokine (C-C motif) ligand 5 -0.0215448