UACC-812 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: ductal carcinoma (Cell Line Ontology, CLO_0009467)
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Genes

80 genes with high or low copy number in UACC-812 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
COMMD6 COMM domain containing 6 2.76305
UCHL3 ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) 2.76305
LMO7 LIM domain 7 2.76305
CTAGE11P CTAGE family, member 11, pseudogene 2.64759
TBC1D4 TBC1 domain family, member 4 2.64759
PHTF1 putative homeodomain transcription factor 1 2.44392
MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2.44392
RARA retinoic acid receptor, alpha 2.41451
CDC6 cell division cycle 6 2.41451
LINC00672 long intergenic non-protein coding RNA 672 2.39327
SNORA21 small nucleolar RNA, H/ACA box 21 2.39327
RPL23 ribosomal protein L23 2.39327
MIR4727 microRNA 4727 2.39327
MIR4726 microRNA 4726 2.39327
LASP1 LIM and SH3 protein 1 2.39327
MIR4734 microRNA 4734 2.39327
C17ORF98 chromosome 17 open reading frame 98 2.39327
C17ORF96 chromosome 17 open reading frame 96 2.39327
MLLT6 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 2.39327
SRCIN1 SRC kinase signaling inhibitor 1 2.39327
MSL1 male-specific lethal 1 homolog (Drosophila) 2.36889
PSMB3 proteasome (prosome, macropain) subunit, beta type, 3 2.36889
CISD3 CDGSH iron sulfur domain 3 2.36889
CWC25 CWC25 spliceosome-associated protein homolog (S. cerevisiae) 2.36889
RAPGEFL1 Rap guanine nucleotide exchange factor (GEF)-like 1 2.36889
LINC00410 long intergenic non-protein coding RNA 410 2.36889
LRRC37A11P leucine rich repeat containing 37, member A11, pseudogene 2.36889
PCGF2 polycomb group ring finger 2 2.36889
WIPF2 WAS/WASL interacting protein family, member 2 2.36889
FBXO47 F-box protein 47 2.36889
PIP4K2B phosphatidylinositol-5-phosphate 4-kinase, type II, beta 2.36889
CASC3 cancer susceptibility candidate 3 2.35236
LOC100131347 RAD52 motif containing 1 pseudogene 2.35236
ARL5C ADP-ribosylation factor-like 5C 2.3178
NR1D1 nuclear receptor subfamily 1, group D, member 1 2.3178
PLXDC1 plexin domain containing 1 2.30944
LINC00379 long intergenic non-protein coding RNA 379 2.30944
RPL19 ribosomal protein L19 2.283
MIR19B1 microRNA 19b-1 2.283
STAC2 SH3 and cysteine rich domain 2 2.283
MIR17HG miR-17-92 cluster host gene 2.283
CACNB1 calcium channel, voltage-dependent, beta 1 subunit 2.283
GPC5 glypican 5 2.26395
THRA thyroid hormone receptor, alpha 2.26395
CDH4 cadherin 4, type 1, R-cadherin (retinal) 2.26395
MED24 mediator complex subunit 24 2.24845
CSF3 colony stimulating factor 3 (granulocyte) 2.24845
FBXL20 F-box and leucine-rich repeat protein 20 2.24845
MED1 mediator complex subunit 1 2.24845
PSMD3 proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 2.24845
SNORD124 small nucleolar RNA, C/D box 124 2.24845
LRRC3C leucine rich repeat containing 3C 2.23324
GSDMA gasdermin A 2.23324
ORMDL3 ORMDL sphingolipid biosynthesis regulator 3 2.23078
GSDMB gasdermin B 2.22793
CDK12 cyclin-dependent kinase 12 2.22558
ZPBP2 zona pellucida binding protein 2 2.22291
NEUROD2 neuronal differentiation 2 2.22123
PPP1R1B protein phosphatase 1, regulatory (inhibitor) subunit 1B 2.21258
STARD3 StAR-related lipid transfer (START) domain containing 3 2.21096
TCAP titin-cap 2.20309
PNMT phenylethanolamine N-methyltransferase 2.20309
MIR4728 microRNA 4728 2.20053
MIEN1 migration and invasion enhancer 1 2.20053
GRB7 growth factor receptor-bound protein 7 2.20053
ERBB2 erb-b2 receptor tyrosine kinase 2 2.20053
PGAP3 post-GPI attachment to proteins 3 2.20053
IKZF3 IKAROS family zinc finger 3 (Aiolos) 2.19863
PCDH9-AS2 PCDH9 antisense RNA 2 2.14116
ATXN8OS ATXN8 opposite strand (non-protein coding) 2.14116
KLHL1 kelch-like family member 1 2.14116
PCDH9-AS3 PCDH9 antisense RNA 3 2.14116
LINC00550 long intergenic non-protein coding RNA 550 2.12703
PCDH9 protocadherin 9 2.12439
OR7E156P olfactory receptor, family 7, subfamily E, member 156 pseudogene 2.12439
LOC647264 keratin-associated protein 6-2 2.12439

low copy number

Symbol Name Standardized Value
OR2T35 olfactory receptor, family 2, subfamily T, member 35 -3.32901
EEF1DP3 eukaryotic translation elongation factor 1 delta pseudogene 3 -2.80776
OR2T11 olfactory receptor, family 2, subfamily T, member 11 (gene/pseudogene) -2.78432
OR2T10 olfactory receptor, family 2, subfamily T, member 10 -2.78237