Uridine_COLO 205 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Uridine perturbation in COLO 205 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Uridine_COLO 205 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.171667
B2M beta-2-microglobulin 0.123945
MBNL2 muscleblind-like splicing regulator 2 0.0808389
EZR ezrin 0.0740864
FOS FBJ murine osteosarcoma viral oncogene homolog 0.0720064
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.0679499
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0640796
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0632517
MYH9 myosin, heavy chain 9, non-muscle 0.0584488
CALR calreticulin 0.0581403
DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 0.0524081
PDIA3 protein disulfide isomerase family A, member 3 0.0507344
GOLGB1 golgin B1 0.0497972
EIF1 eukaryotic translation initiation factor 1 0.0490505
RRBP1 ribosome binding protein 1 0.0485168
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0478794
DSPP dentin sialophosphoprotein 0.0457903
NEDD9 neural precursor cell expressed, developmentally down-regulated 9 0.0449212
CANX calnexin 0.0408307
SQSTM1 sequestosome 1 0.0401294
ANXA1 annexin A1 0.0397121
GOLGA4 golgin A4 0.0393403
GFPT1 glutamine--fructose-6-phosphate transaminase 1 0.0388006
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0375635
SRRM2 serine/arginine repetitive matrix 2 0.0374277
TTC3 tetratricopeptide repeat domain 3 0.0361408
ADM adrenomedullin 0.0343896
IRF1 interferon regulatory factor 1 0.0342887
SEC31A SEC31 homolog A (S. cerevisiae) 0.0337928
FOSB FBJ murine osteosarcoma viral oncogene homolog B 0.0314468
CALU calumenin 0.0311548
LMO7 LIM domain 7 0.0309886
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.0309577
PIK3C2A phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha 0.0305653
MORF4L2 mortality factor 4 like 2 0.0297545
GOLGA2 golgin A2 0.028382
PKM pyruvate kinase, muscle 0.0283437
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0282401
LOC112694756 uncharaterized LOC112694756 0.0279858
HYOU1 hypoxia up-regulated 1 0.0275111
HDLBP high density lipoprotein binding protein 0.0274985
JUN jun proto-oncogene 0.0273849
CXCL8 chemokine (C-X-C motif) ligand 8 0.0271033
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0267446
COG6 component of oligomeric golgi complex 6 0.0264408
SEC61A1 Sec61 alpha 1 subunit (S. cerevisiae) 0.0263089
PDIA6 protein disulfide isomerase family A, member 6 0.0260624
TSC22D1 TSC22 domain family, member 1 0.0255738
ERN1 endoplasmic reticulum to nucleus signaling 1 0.0252015
CDHR2 cadherin-related family member 2 0.0248236
PACSIN2 protein kinase C and casein kinase substrate in neurons 2 0.024294
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0242209
PDXDC1 pyridoxal-dependent decarboxylase domain containing 1 0.0241687
DIS3 DIS3 exosome endoribonuclease and 3'-5' exoribonuclease 0.0237106
NFE2L1 nuclear factor, erythroid 2-like 1 0.0234737
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 0.0233098
SF3B1 splicing factor 3b, subunit 1, 155kDa 0.0230607
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0228245
AFF1 AF4/FMR2 family, member 1 0.0228002
MXI1 MAX interactor 1, dimerization protein 0.0226873
SUCO SUN domain containing ossification factor 0.0224565
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0222625
RBCK1 RanBP-type and C3HC4-type zinc finger containing 1 0.0217206
PMM2 phosphomannomutase 2 0.0215244
KDM3A lysine (K)-specific demethylase 3A 0.0214636
SFTPA2 surfactant protein A2 0.0213568
ACBD3 acyl-CoA binding domain containing 3 0.0212676
ESYT2 extended synaptotagmin-like protein 2 0.0212209
RPL3 ribosomal protein L3 0.0211772
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.0211087
TPI1 triosephosphate isomerase 1 0.0210602
EIF2AK3 eukaryotic translation initiation factor 2-alpha kinase 3 0.0207385
TIPARP TCDD-inducible poly(ADP-ribose) polymerase 0.0206884
DDIT4 DNA-damage-inducible transcript 4 0.0206717
PDIA4 protein disulfide isomerase family A, member 4 0.0205825
RFX2 regulatory factor X, 2 (influences HLA class II expression) 0.02053
SRP54 signal recognition particle 54kDa 0.0202017
UGDH UDP-glucose 6-dehydrogenase 0.0199842
TMF1 TATA element modulatory factor 1 0.0199645
ERRFI1 ERBB receptor feedback inhibitor 1 0.0199523
ENO1 enolase 1, (alpha) 0.0199296
PER2 period circadian clock 2 0.0193352
COPA coatomer protein complex, subunit alpha 0.0193207
TSC22D2 TSC22 domain family, member 2 0.0192341
BRD2 bromodomain containing 2 0.0189734
TFG TRK-fused gene 0.0188274
FNIP1 folliculin interacting protein 1 0.0187995
NDRG1 N-myc downstream regulated 1 0.0187172
SPTY2D1 SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae) 0.0185498
WEE1 WEE1 G2 checkpoint kinase 0.0184976
SEC24D SEC24 family member D 0.0182376
BCLAF1 BCL2-associated transcription factor 1 0.0180831
UBR2 ubiquitin protein ligase E3 component n-recognin 2 0.0180585
PPP1CB protein phosphatase 1, catalytic subunit, beta isozyme 0.017912
ACIN1 apoptotic chromatin condensation inducer 1 0.0178691
HERPUD1 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 0.0178583
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0177999
IER2 immediate early response 2 0.0176854
COPB2 coatomer protein complex, subunit beta 2 (beta prime) 0.0176566
GOLGA3 golgin A3 0.0174898

decreased expression

Symbol Name Standardized Value
EPSTI1 epithelial stromal interaction 1 (breast) -0.109226
CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 -0.082078
SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) -0.0780953
VCL vinculin -0.0649548
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.0616869
STAT1 signal transducer and activator of transcription 1, 91kDa -0.0610304
ZMYND8 zinc finger, MYND-type containing 8 -0.0576832
ARHGAP26 Rho GTPase activating protein 26 -0.0570313
STS steroid sulfatase (microsomal), isozyme S -0.0553412
ERBIN erbb2 interacting protein -0.0527852
PLSCR1 phospholipid scramblase 1 -0.0521796
NCKAP5 NCK-associated protein 5 -0.0513501
RAD51B RAD51 paralog B -0.0505801
C6ORF132 chromosome 6 open reading frame 132 -0.0505506
CYP3A5 cytochrome P450, family 3, subfamily A, polypeptide 5 -0.0497534
RABGAP1L RAB GTPase activating protein 1-like -0.0460137
MX1 MX dynamin-like GTPase 1 -0.0459163
GMDS GDP-mannose 4,6-dehydratase -0.0457598
SP100 SP100 nuclear antigen -0.0443643
HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 -0.0429018
XAF1 XIAP associated factor 1 -0.0427553
ATP11A ATPase, class VI, type 11A -0.0425054
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 -0.0414611
B4GALT5 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 -0.0411059
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.0402297
PTBP3 polypyrimidine tract binding protein 3 -0.0397189
ANKRD10 ankyrin repeat domain 10 -0.039477
SYNE2 spectrin repeat containing, nuclear envelope 2 -0.0386499
TRIO trio Rho guanine nucleotide exchange factor -0.0384619
NAALADL2 N-acetylated alpha-linked acidic dipeptidase-like 2 -0.0378365
PAN3 PAN3 poly(A) specific ribonuclease subunit -0.0371551
LRCH1 leucine-rich repeats and calponin homology (CH) domain containing 1 -0.0363979
NF1 neurofibromin 1 -0.0361364
MX2 MX dynamin-like GTPase 2 -0.036102
MACC1 metastasis associated in colon cancer 1 -0.0357697
RNF213 ring finger protein 213 -0.0354686
FOXP1 forkhead box P1 -0.0345261
BICRAL BICRA like chromatin remodeling complex associated protein -0.034202
DDX17 DEAD (Asp-Glu-Ala-Asp) box helicase 17 -0.0340409
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 -0.0340276
ZBTB20 zinc finger and BTB domain containing 20 -0.0338722
ETV6 ets variant 6 -0.0337457
PRKCA protein kinase C, alpha -0.0332557
PATJ PATJ crumbs cell polarity complex component -0.0329731
TMEM62 transmembrane protein 62 -0.0324011
EGLN3 egl-9 family hypoxia-inducible factor 3 -0.0321841
TPT1 tumor protein, translationally-controlled 1 -0.0321059
FMN1 formin 1 -0.0314329
DDX60L DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like -0.0309513
MSI2 musashi RNA-binding protein 2 -0.030929
NPSR1 neuropeptide S receptor 1 -0.030525
STK24 serine/threonine kinase 24 -0.0304
ATP10B ATPase, class V, type 10B -0.0301077
SPATS2L spermatogenesis associated, serine-rich 2-like -0.0296877
SPATA13 spermatogenesis associated 13 -0.0296873
LPP LIM domain containing preferred translocation partner in lipoma -0.0294654
PDE4D phosphodiesterase 4D, cAMP-specific -0.0290855
RUNX1 runt-related transcription factor 1 -0.0287476
MAP3K5 mitogen-activated protein kinase kinase kinase 5 -0.0282702
YAP1 Yes-associated protein 1 -0.027965
RNF43 ring finger protein 43 -0.0279118
ANXA2 annexin A2 -0.0277608
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) -0.0277134
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 -0.0275935
DGKH diacylglycerol kinase, eta -0.0272178
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 -0.027125
SSH2 slingshot protein phosphatase 2 -0.0269716
SERINC5 serine incorporator 5 -0.0268913
BTBD9 BTB (POZ) domain containing 9 -0.0264187
LRBA LPS-responsive vesicle trafficking, beach and anchor containing -0.0262338
N4BP2L2 NEDD4 binding protein 2-like 2 -0.0258913
PARP4 poly (ADP-ribose) polymerase family, member 4 -0.0257627
SMAD3 SMAD family member 3 -0.0257495
PCED1B PC-esterase domain containing 1B -0.0250588
CATSPERB catsper channel auxiliary subunit beta -0.0248529
RIGI RNA sensor RIG-I -0.0247961
EXOC4 exocyst complex component 4 -0.0247861
SAMD12 sterile alpha motif domain containing 12 -0.0247829
NT5C2 5'-nucleotidase, cytosolic II -0.0241233
TNFRSF21 tumor necrosis factor receptor superfamily, member 21 -0.0240732
ITGA6 integrin, alpha 6 -0.0238449
PMP22 peripheral myelin protein 22 -0.0236229
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 -0.0235114
TNS4 tensin 4 -0.0231041
LYZ lysozyme -0.0229468
MAML2 mastermind-like 2 (Drosophila) -0.0228237
EXT1 exostosin glycosyltransferase 1 -0.022788
TM4SF1 transmembrane 4 L six family member 1 -0.0226969
SMYD3 SET and MYND domain containing 3 -0.0226373
DDX60 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 -0.0223285
NRIP1 nuclear receptor interacting protein 1 -0.0222771
GSK3B glycogen synthase kinase 3 beta -0.0222367
PRKG1 protein kinase, cGMP-dependent, type I -0.0222157
SPIDR scaffolding protein involved in DNA repair -0.0218264
PRKCE protein kinase C, epsilon -0.0217772
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa -0.0213558
NCOA7 nuclear receptor coactivator 7 -0.0212879
PERP PERP, TP53 apoptosis effector -0.0212807
FARP1 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) -0.0212642
CTNND1 catenin (cadherin-associated protein), delta 1 -0.021229