Valdecoxib_HepG2/C3A Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Valdecoxib perturbation in HepG2/C3A cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Valdecoxib_HepG2/C3A drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 0.342183
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.176703
APOB apolipoprotein B 0.146839
ERRFI1 ERBB receptor feedback inhibitor 1 0.0962621
SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 0.0646557
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0572083
MT2A metallothionein 2A 0.0552625
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0540232
GPAM glycerol-3-phosphate acyltransferase, mitochondrial 0.0468121
DSPP dentin sialophosphoprotein 0.0433102
RPS6 ribosomal protein S6 0.0429832
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0420478
RALGAPA2 Ral GTPase activating protein, alpha subunit 2 (catalytic) 0.0355946
AFDN afadin, adherens junction formation factor 0.0327541
ELL2 elongation factor, RNA polymerase II, 2 0.0324748
CCL20 chemokine (C-C motif) ligand 20 0.0321823
ENO1 enolase 1, (alpha) 0.0299618
APLP2 amyloid beta (A4) precursor-like protein 2 0.0294423
FNDC3B fibronectin type III domain containing 3B 0.0293112
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0286084
VPS54 vacuolar protein sorting 54 homolog (S. cerevisiae) 0.0285007
FBF1 Fas (TNFRSF6) binding factor 1 0.0284452
GOLGA4 golgin A4 0.0284305
JMJD1C jumonji domain containing 1C 0.0283959
ARHGAP9 Rho GTPase activating protein 9 0.0283457
LCOR ligand dependent nuclear receptor corepressor 0.0280707
ACSL4 acyl-CoA synthetase long-chain family member 4 0.0278118
KIF5B kinesin family member 5B 0.0277706
PCBP2 poly(rC) binding protein 2 0.0270605
RBM25 RNA binding motif protein 25 0.026279
DSCAM Down syndrome cell adhesion molecule 0.0261457
TF transferrin 0.0261228
GPC3 glypican 3 0.0260014
MATR3 matrin 3 0.0258514
LRRTM4 leucine rich repeat transmembrane neuronal 4 0.0255787
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0253251
FN1 fibronectin 1 0.0250267
LDHA lactate dehydrogenase A 0.0244554
APOA2 apolipoprotein A-II 0.0243201
SLC38A2 solute carrier family 38, member 2 0.0242614
ITIH2 inter-alpha-trypsin inhibitor heavy chain 2 0.0234805
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0232458
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 0.0232166
MAN1A1 mannosidase, alpha, class 1A, member 1 0.0227533
FTL ferritin, light polypeptide 0.0226097
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0225704
ABCA5 ATP-binding cassette, sub-family A (ABC1), member 5 0.0224239
DOCK4 dedicator of cytokinesis 4 0.0223231
TIMP1 TIMP metallopeptidase inhibitor 1 0.0222927
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0221432
TRIM26 tripartite motif containing 26 0.021976
CEMIP2 cell migration inducing hyaluronidase 2 0.0216589
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 0.021447
SESTD1 SEC14 and spectrin domains 1 0.0205864
RPL11 ribosomal protein L11 0.0204746
ACTR3 ARP3 actin-related protein 3 homolog (yeast) 0.0203892
MALT1 MALT1 paracaspase 0.0200519
PSME4 proteasome (prosome, macropain) activator subunit 4 0.0199422
PCM1 pericentriolar material 1 0.0197771
YBX1 Y box binding protein 1 0.0197766
CPE carboxypeptidase E 0.0194288
FOXO1 forkhead box O1 0.0193909
DDIT4 DNA-damage-inducible transcript 4 0.0190628
RPS12 ribosomal protein S12 0.0188133
SLC6A14 solute carrier family 6 (amino acid transporter), member 14 0.0183727
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats 0.0182077
EML4 echinoderm microtubule associated protein like 4 0.0181094
C3 complement component 3 0.017902
TOP1 topoisomerase (DNA) I 0.0177622
PRAG1 PEAK1 related, kinase-activating pseudokinase 1 0.0177231
INSIG2 insulin induced gene 2 0.0175962
SOS1 son of sevenless homolog 1 (Drosophila) 0.0175867
PTBP3 polypyrimidine tract binding protein 3 0.0173796
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.0171915
B2M beta-2-microglobulin 0.0171636
ARFGEF2 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) 0.0171245
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 0.0170604
MBNL3 muscleblind-like splicing regulator 3 0.0169238
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.016897
SET SET nuclear proto-oncogene 0.0167155
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 0.0166206
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0164878
CFB complement factor B 0.0164588
KDM7A lysine (K)-specific demethylase 7A 0.0163547
RPL31 ribosomal protein L31 0.016306
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 0.0162738
ADGRG6 adhesion G protein-coupled receptor G6 0.0162124
FAT1 FAT atypical cadherin 1 0.0161199
A2M alpha-2-macroglobulin 0.0160634
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.0160447
NIPBL Nipped-B homolog (Drosophila) 0.0159942
VMP1 vacuole membrane protein 1 0.0159927
RTN4 reticulon 4 0.0152477
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.0151738
RAD23B RAD23 homolog B (S. cerevisiae) 0.0150867
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0150552
RPLP1 ribosomal protein, large, P1 0.01499
EEF2 eukaryotic translation elongation factor 2 0.0149453
SRRM1 serine/arginine repetitive matrix 1 0.014908
NCKAP1 NCK-associated protein 1 0.0148301

decreased expression

Symbol Name Standardized Value
IGF2 insulin-like growth factor 2 -0.752869
AKAP12 A kinase (PRKA) anchor protein 12 -0.136195
GPC6 glypican 6 -0.0730869
EHBP1 EH domain binding protein 1 -0.0526966
ASPH aspartate beta-hydroxylase -0.0481749
GMDS GDP-mannose 4,6-dehydratase -0.0441867
ATXN1 ataxin 1 -0.0417456
NPAS2 neuronal PAS domain protein 2 -0.0407814
FRMD5 FERM domain containing 5 -0.0364199
TPT1 tumor protein, translationally-controlled 1 -0.0354899
MAML2 mastermind-like 2 (Drosophila) -0.0341383
INTS6 integrator complex subunit 6 -0.033282
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 -0.0324395
RNF213 ring finger protein 213 -0.0294597
CP ceruloplasmin (ferroxidase) -0.0276189
GK glycerol kinase -0.026978
EXT1 exostosin glycosyltransferase 1 -0.0269646
RERE arginine-glutamic acid dipeptide (RE) repeats -0.0269634
RIGI RNA sensor RIG-I -0.0261295
NDRG1 N-myc downstream regulated 1 -0.0231529
ATP10A ATPase, class V, type 10A -0.0223433
LPP LIM domain containing preferred translocation partner in lipoma -0.0221461
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.021932
HPCAL1 hippocalcin-like 1 -0.0216206
FMNL2 formin-like 2 -0.0213529
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0210322
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 -0.0205184
CHST15 carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15 -0.0204648
ZHX2 zinc fingers and homeoboxes 2 -0.0198556
DTNA dystrobrevin, alpha -0.0198322
GNAS GNAS complex locus -0.0195776
DNAH17 dynein, axonemal, heavy chain 17 -0.0194753
TRIO trio Rho guanine nucleotide exchange factor -0.0193498
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) -0.0192755
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0184171
STAT1 signal transducer and activator of transcription 1, 91kDa -0.0179925
SAMD4A sterile alpha motif domain containing 4A -0.0178108
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0176798
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0176373
HSPH1 heat shock 105kDa/110kDa protein 1 -0.0174679
SLC9A1 solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 -0.0169381
PEG3 paternally expressed 3 -0.0168801
AGO2 argonaute RISC catalytic component 2 -0.0163183
LARGE1 LARGE xylosyl- and glucuronyltransferase 1 -0.0162652
ENKUR enkurin, TRPC channel interacting protein -0.016265
PRKCA protein kinase C, alpha -0.0159176
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 -0.0158038
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0157768
SUPT3H suppressor of Ty 3 homolog (S. cerevisiae) -0.0157609
ALDH1A2 aldehyde dehydrogenase 1 family, member A2 -0.0157056
PARD3 par-3 family cell polarity regulator -0.0153309
HDAC4 histone deacetylase 4 -0.0152791
DNAJB1 DnaJ (Hsp40) homolog, subfamily B, member 1 -0.015273
DNAH5 dynein, axonemal, heavy chain 5 -0.0150309
TMSB10 thymosin beta 10 -0.0150118
GRB10 growth factor receptor-bound protein 10 -0.0148815
COL27A1 collagen, type XXVII, alpha 1 -0.0144904
SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 -0.0142506
MSI2 musashi RNA-binding protein 2 -0.0142066
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 -0.0140198
RAD51B RAD51 paralog B -0.0136269
SP100 SP100 nuclear antigen -0.0133765
SCN9A sodium channel, voltage gated, type IX alpha subunit -0.0131386
NABP1 nucleic acid binding protein 1 -0.0130022
RALY RALY heterogeneous nuclear ribonucleoprotein -0.0127077
SLC16A3 solute carrier family 16 (monocarboxylate transporter), member 3 -0.0125622
SHANK2 SH3 and multiple ankyrin repeat domains 2 -0.0125217
PTPRN2 protein tyrosine phosphatase, receptor type, N polypeptide 2 -0.0125143
RBBP6 retinoblastoma binding protein 6 -0.0123684
KDM4B lysine (K)-specific demethylase 4B -0.0123141
TNFSF14 tumor necrosis factor (ligand) superfamily, member 14 -0.0122948
IGF1R insulin-like growth factor 1 receptor -0.0121795
FARP1 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) -0.0120885
SOX5 SRY (sex determining region Y)-box 5 -0.0120574
PLSCR1 phospholipid scramblase 1 -0.0120444
DHRS3 dehydrogenase/reductase (SDR family) member 3 -0.0119476
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 -0.0117671
PLXDC2 plexin domain containing 2 -0.0115558
ZBTB20 zinc finger and BTB domain containing 20 -0.0115489
PTPRK protein tyrosine phosphatase, receptor type, K -0.0114774
ERN1 endoplasmic reticulum to nucleus signaling 1 -0.0114736
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 -0.0114352
STK17A serine/threonine kinase 17a -0.0113857
FAM107B family with sequence similarity 107, member B -0.0113392
KLF6 Kruppel-like factor 6 -0.0113364
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0113265
PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 -0.0109719
GLIPR1 GLI pathogenesis-related 1 -0.0109581
FLNB filamin B, beta -0.0108837
SEPTIN9 septin 9 -0.0108596
RPS24 ribosomal protein S24 -0.0108328
LARP4B La ribonucleoprotein domain family, member 4B -0.0107907
MKLN1 muskelin 1, intracellular mediator containing kelch motifs -0.0106746
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0106473
CTSB cathepsin B -0.0106143
SPATA13 spermatogenesis associated 13 -0.0105948
TIMP2 TIMP metallopeptidase inhibitor 2 -0.0104787
ATF7IP2 activating transcription factor 7 interacting protein 2 -0.0102991
DISC1 disrupted in schizophrenia 1 -0.0101785
ANKRD10 ankyrin repeat domain 10 -0.00992683